Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009010

Physical Location & Seq

Genomic Coordinates Forward (+)

25285462 .. 25286767

Gene Structure 1306 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g23380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCAGTTGAAGCTCAGCACCACCACCATGCAGTTCTAATCCCACCACAACTGATTCCCAACAGAGATTTCATCAAAACCAACCAAGGAAATCCAAATATTTACAGTGCCCAGATGGATTCCGGCCTTCTTTTGTCGACCGCAATGCCGGAAAATCTGCTTCCGATGTATCAGTCTCCTTTCTATGACGCAAATAAGGCTTCCATGAACAAGGAGGCGGCAGACAGTGGCCTCACATACAACAACATCTCCGCTCCCCGGAAGCGGCCGAGAGAACAATTAATCAATGACTTCAACAATTTTTCAGTCCCTCAGAAGACCAAAATTTCTTCTTTTCTCGACCAAGACATTGCTTTTCAAATCCAACAACAGCAATCTGAGATCGACCACTTCATTGCCCAACATACGGAAAAAGTGAGATTGGAACTCGAGGAGCAAAGAAAGCAGCAATCGAGAATGTTAGTATCGGAAATACAGGATAGAATCGTCAAGAAACTGAAAGAGAAAGATGAGGAGATTCAGAGGATGGGAAAGCTCAATTGGGTTCTCCAAGAACGAGTCAAGAGCCTATTCGCCGAGAATCAGATATGGAGGGACTTGGCACAGACAAACGAAGCCACAGCCAATTCCCTACGCACCAATTTAGAGCAAGTCCTGGCGCACGTTAACGACGATCACCACGCCGGCGGCAGCGGTGCCATGGCCACAGCTTTGGCGGATGATGCCCAATCATGCTGCGGGAGCAATGAATACGGGTGGGATATTGAGGCGGTGGACAGCGGAAATGCGGCGGTTGGCGGTGGCGTTCGCGGTGGTTCTGGTGGTGGAGATAGGATGTGCAAGAGTTGTGGGGGGAGAGAGTCAAGGGTGTTGTTGCTGCCATGCAGGCATTTGTGCTTGTGTACAATGTGTGGGTCCACCCTCCTCAATTGCCCTGCATGCAACTCTGTCATCAATGCCAGTGTGCATGTTAATTTCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009739 GO:0009892 GO:0009987 GO:0010033 GO:0010466 GO:0010605 GO:0010941 GO:0010951 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0030162 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0042742 GO:0043067 GO:0043069 GO:0043086 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051704 GO:0051707 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0080090 GO:0098542 GO:0140096 GO:1901564 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

328

Amino Acids

36.23

Weight (kDa)

6.0

Isoelectric Point (pI)

49.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	277 - 319	8.6e-10	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19700 AT5G45100 AT5G45100
fragaria_vesca	FvH4_3g12030 FvH4_3g12030
malus_domestica	MD05G1255400.v1.1 MD10G1235500.v1.1
prunus_persica	Prupe.4G108500_v2.0.a1
pyrus_communis	pycom05g23380 pycom10g19700 pycom10g19710
rosa_chinensis	RchiOBHm_Chr5g0019721
rosa_laevigata	RLG00000032464
rosa_multiflora	Rmu_ssc0000062.1_g000019
rosa_roxburghii	Rroxscaffold_1G00058390
rosa_rugosa	Rorug05G0053500
rosa_samantha	Rh5AG143800 Rh5BG142700 Rh5CG154100 Rh5CG154200 Rh5DG142800
rosa_wichuraiana	Rw5G012730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	695
AccBSI	CCGCTC	1 cut(s)	254
AccI	GTMKAC	1 cut(s)	137
AccII	CGCG	1 cut(s)	810
AcoI	YGGCCR	2 cut(s)	266, 702
AcsI	RAATTY	1 cut(s)	324
AfaI	GTAC	1 cut(s)	904
AfiI	CCNNNNNNNGG	3 cut(s)	258, 264, 406
AgsI	TTSAA	3 cut(s)	11, 295, 359
AjnI	CCWGG	1 cut(s)	654
AjuI	GAANNNNNNNTTGG	4 cut(s)	53, 85, 523, 555
AluBI	AGCT	3 cut(s)	14, 535, 710
AluI	AGCT	3 cut(s)	14, 535, 710
Alw26I	GTCTC	1 cut(s)	180
Ama87I	CYCGRG	1 cut(s)	428
AoxI	GGCC	4 cut(s)	124, 229, 266, 702
ApeKI	GCWGC	4 cut(s)	445, 690, 735, 877
ApoI	RAATTY	1 cut(s)	324
AseI	ATTAAT	1 cut(s)	281
AspLEI	GCGC	1 cut(s)	661
AspS9I	GGNCC	1 cut(s)	915
AsuC2I	CCSGG	1 cut(s)	259
AsuHPI	GGTGA	1 cut(s)	668
AvaI	CYCGRG	1 cut(s)	428
AvaII	GGWCC	1 cut(s)	915
BaeGI	GKGCMC	1 cut(s)	112
BalI	TGGCCA	1 cut(s)	704
BanI	GGYRCC	1 cut(s)	695
BbsI	GAAGAC	1 cut(s)	323
BbvI	GCAGC	4 cut(s)	457, 702, 722, 864
BccI	CCATC	2 cut(s)	109, 520
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BciT130I	CCWGG	1 cut(s)	656
BcnI	CCSGG	1 cut(s)	259
BcoDI	GTCTC	1 cut(s)	180
BglI	GCCNNNNNGGC	1 cut(s)	886
BisI	GCNGC	8 cut(s)	219, 266, 446, 688, 691, 736, 789, 878
BlpI	GCTNAGC	1 cut(s)	15
BlsI	GCNGC	8 cut(s)	220, 267, 447, 689, 692, 737, 790, 879
Bme1390I	CCNGG	2 cut(s)	259, 656
Bme18I	GGWCC	1 cut(s)	915
BmeT110I	CYCGRG	1 cut(s)	428
BmgT120I	GGNCC	1 cut(s)	915
BmiI	GGNNCC	2 cut(s)	697, 916
BmrFI	CCNGG	2 cut(s)	259, 656
BmsI	GCATC	1 cut(s)	712
BpiI	GAAGAC	1 cut(s)	323
Bpu1102I	GCTNAGC	1 cut(s)	15
BpuMI	CCSGG	1 cut(s)	259
BsaJI	CCNNGG	3 cut(s)	85, 257, 699
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bsc4I	CCNNNNNNNGG	3 cut(s)	258, 264, 406
Bse118I	RCCGGY	1 cut(s)	683
Bse1I	ACTGG	1 cut(s)	960
Bse3DI	GCAATG	4 cut(s)	150, 348, 393, 751
BseBI	CCWGG	1 cut(s)	656
BseDI	CCNNGG	3 cut(s)	85, 257, 699
BseGI	GGATG	3 cut(s)	531, 724, 840
BseLI	CCNNNNNNNGG	3 cut(s)	258, 264, 406
BseMI	GCAATG	4 cut(s)	150, 348, 393, 751
BseMII	CTCAG	3 cut(s)	29, 326, 369
BseNI	ACTGG	1 cut(s)	960
BseRI	GAGGAG	3 cut(s)	446, 527, 914
BseSI	GKGCMC	1 cut(s)	112
BseX3I	CGGCCG	1 cut(s)	266
BseXI	GCAGC	4 cut(s)	457, 702, 722, 864
Bsh1236I	CGCG	1 cut(s)	810
Bsh1285I	CGRYCG	2 cut(s)	141, 269
BshFI	GGCC	4 cut(s)	126, 231, 268, 704
BshNI	GGYRCC	1 cut(s)	695
BsiEI	CGRYCG	2 cut(s)	141, 269
BsiHKCI	CYCGRG	1 cut(s)	428
BsiSI	CCGG	4 cut(s)	123, 149, 259, 684
BslFI	GGGAC	2 cut(s)	293, 608
BslI	CCNNNNNNNGG	3 cut(s)	258, 264, 406
BsmAI	GTCTC	1 cut(s)	180
BsmFI	GGGAC	2 cut(s)	293, 608
BsnI	GGCC	4 cut(s)	126, 231, 268, 704
BsoBI	CYCGRG	1 cut(s)	428
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp1407I	TGTACA	1 cut(s)	902
Bsp143I	GATC	2 cut(s)	381, 673
Bsp1720I	GCTNAGC	1 cut(s)	15
Bsp19I	CCATGG	1 cut(s)	699
BspANI	GGCC	4 cut(s)	126, 231, 268, 704
BspCNI	CTCAG	3 cut(s)	28, 325, 370
BspFNI	CGCG	1 cut(s)	810
BspLI	GGNNCC	2 cut(s)	697, 916
BspT107I	GGYRCC	1 cut(s)	695
BsrBI	CCGCTC	1 cut(s)	254
BsrDI	GCAATG	4 cut(s)	150, 348, 393, 751
BsrFI	RCCGGY	1 cut(s)	683
BsrGI	TGTACA	1 cut(s)	902
BsrI	ACTGG	1 cut(s)	960
BssAI	RCCGGY	1 cut(s)	683
BssECI	CCNNGG	3 cut(s)	85, 257, 699
BssMI	GATC	2 cut(s)	381, 673
BssT1I	CCWWGG	2 cut(s)	85, 699
Bst2UI	CCWGG	1 cut(s)	656
Bst4CI	ACNGT	2 cut(s)	107, 227
BstAUI	TGTACA	1 cut(s)	902
BstC8I	GCNNGC	3 cut(s)	685, 887, 940
BstDEI	CTNAG	4 cut(s)	15, 312, 378, 981
BstDSI	CCRYGG	1 cut(s)	699
BstF5I	GGATG	3 cut(s)	531, 724, 840
BstFNI	CGCG	1 cut(s)	810
BstHHI	GCGC	1 cut(s)	661
BstKTI	GATC	2 cut(s)	384, 676
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	2 cut(s)	381, 673
BstMCI	CGRYCG	2 cut(s)	141, 269
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 197, 442, 722, 741, 886, 939
BstNI	CCWGG	1 cut(s)	656
BstNSI	RCATGY	2 cut(s)	942, 971
BstSCI	CCNGG	2 cut(s)	257, 654
BstSLI	GKGCMC	1 cut(s)	112
BstUI	CGCG	1 cut(s)	810
BstV1I	GCAGC	4 cut(s)	457, 702, 722, 864
BstV2I	GAAGAC	1 cut(s)	323
BstXI	CCANNNNNNTGG	1 cut(s)	712
BstZI	CGGCCG	1 cut(s)	266
BsuRI	GGCC	4 cut(s)	126, 231, 268, 704
BtgI	CCRYGG	1 cut(s)	699
BtsCI	GGATG	3 cut(s)	531, 724, 840
BtsIMutI	CAGTG	3 cut(s)	112, 232, 967
Cac8I	GCNNGC	3 cut(s)	685, 887, 940
CfoI	GCGC	1 cut(s)	661
Cfr10I	RCCGGY	1 cut(s)	683
Cfr13I	GGNCC	1 cut(s)	915
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	903
CspCI	CAANNNNNGTGG	2 cut(s)	829, 864
CviAII	CATG	7 cut(s)	29, 205, 700, 732, 882, 939, 968
CviQI	GTAC	1 cut(s)	903
DdeI	CTNAG	4 cut(s)	15, 312, 378, 981
DpnI	GATC	2 cut(s)	383, 675
DpnII	GATC	2 cut(s)	381, 673
EaeI	YGGCCR	2 cut(s)	266, 702
EagI	CGGCCG	1 cut(s)	266
EciI	GGCGGA	1 cut(s)	731
EclXI	CGGCCG	1 cut(s)	266
Eco130I	CCWWGG	2 cut(s)	85, 699
Eco47I	GGWCC	1 cut(s)	915
Eco52I	CGGCCG	1 cut(s)	266
Eco88I	CYCGRG	1 cut(s)	428
EcoRII	CCWGG	1 cut(s)	654
EcoT14I	CCWWGG	2 cut(s)	85, 699
ErhI	CCWWGG	2 cut(s)	85, 699
FaeI	CATG	7 cut(s)	32, 208, 703, 735, 885, 942, 971
FaqI	GGGAC	2 cut(s)	293, 608
FatI	CATG	7 cut(s)	28, 204, 699, 731, 881, 938, 967
FauI	CCCGC	1 cut(s)	731
FblI	GTMKAC	1 cut(s)	137
Fnu4HI	GCNGC	8 cut(s)	219, 266, 446, 688, 691, 736, 789, 878
FokI	GGATG	3 cut(s)	538, 731, 847
Fsp4HI	GCNGC	8 cut(s)	219, 266, 446, 688, 691, 736, 789, 878
GlaI	GCGC	1 cut(s)	660
GluI	GCNGC	8 cut(s)	219, 266, 446, 688, 691, 736, 789, 878
HaeIII	GGCC	4 cut(s)	126, 231, 268, 704
HapII	CCGG	4 cut(s)	123, 149, 259, 684
HgaI	GACGC	1 cut(s)	197
HhaI	GCGC	1 cut(s)	661
Hin1II	CATG	7 cut(s)	32, 208, 703, 735, 885, 942, 971
Hin6I	GCGC	1 cut(s)	659
HinP1I	GCGC	1 cut(s)	659
HincII	GTYRAC	2 cut(s)	138, 667
HindII	GTYRAC	2 cut(s)	138, 667
HinfI	GANTC	7 cut(s)	55, 119, 483, 517, 558, 580, 860
HpaI	GTTAAC	1 cut(s)	667
HpaII	CCGG	4 cut(s)	123, 149, 259, 684
HphI	GGTGA	1 cut(s)	668
Hpy166II	GTNNAC	5 cut(s)	138, 667, 775, 903, 918
Hpy188I	TCNGA	6 cut(s)	165, 315, 379, 469, 522, 585
Hpy188III	TCNNGA	4 cut(s)	338, 453, 490, 562
Hpy8I	GTNNAC	5 cut(s)	138, 667, 775, 903, 918
Hpy99I	CGWCG	1 cut(s)	674
HpyAV	CCTTC	1 cut(s)	137
HpyCH4III	ACNGT	2 cut(s)	107, 227
HpyCH4IV	ACGT	1 cut(s)	663
HpyCH4V	TGCA	6 cut(s)	32, 840, 885, 938, 942, 967
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 197, 442, 722, 741, 886, 939
HpyF3I	CTNAG	4 cut(s)	15, 312, 378, 981
HpySE526I	ACGT	1 cut(s)	663
Hsp92II	CATG	7 cut(s)	32, 208, 703, 735, 885, 942, 971
HspAI	GCGC	1 cut(s)	659
KroI	GCCGGC	1 cut(s)	683
KroNI	GCCGGC	1 cut(s)	685
KspAI	GTTAAC	1 cut(s)	667
Kzo9I	GATC	2 cut(s)	381, 673
LmnI	GCTCC	3 cut(s)	259, 433, 741
Lsp1109I	GCAGC	4 cut(s)	457, 702, 722, 864
LweI	GCATC	1 cut(s)	712
MaeII	ACGT	1 cut(s)	663
MalI	GATC	2 cut(s)	383, 675
MbiI	CCGCTC	1 cut(s)	254
MboI	GATC	2 cut(s)	381, 673
MboII	GAAGA	2 cut(s)	321, 328
MfeI	CAATTG	2 cut(s)	538, 928
MhlI	GDGCHC	1 cut(s)	112
MlsI	TGGCCA	1 cut(s)	704
MluCI	AATT	8 cut(s)	278, 298, 324, 538, 625, 640, 928, 973
MluNI	TGGCCA	1 cut(s)	704
MlyI	GAGTC	2 cut(s)	567, 869
MmeI	TCCRAC	1 cut(s)	388
Mox20I	TGGCCA	1 cut(s)	704
MreI	CGCCGGCG	1 cut(s)	683
MroNI	GCCGGC	1 cut(s)	683
MscI	TGGCCA	1 cut(s)	704
MseI	TTAA	3 cut(s)	281, 666, 972
MslI	CAYNNNNRTG	1 cut(s)	27
Msp20I	TGGCCA	1 cut(s)	704
MspA1I	CMGCKG	2 cut(s)	693, 780
MspI	CCGG	4 cut(s)	123, 149, 259, 684
MspR9I	CCNGG	2 cut(s)	259, 656
MunI	CAATTG	2 cut(s)	538, 928
MvaI	CCWGG	1 cut(s)	656
MvnI	CGCG	1 cut(s)	810
MwoI	GCNNNNNNNGC	7 cut(s)	11, 197, 442, 722, 741, 886, 939
NaeI	GCCGGC	1 cut(s)	685
NciI	CCSGG	1 cut(s)	259
NcoI	CCATGG	1 cut(s)	699
NdeII	GATC	2 cut(s)	381, 673
NgoMIV	GCCGGC	1 cut(s)	683
NlaIII	CATG	7 cut(s)	32, 208, 703, 735, 885, 942, 971
NlaIV	GGNNCC	2 cut(s)	697, 916
NmeAIII	GCCGAG	2 cut(s)	294, 601
NspI	RCATGY	2 cut(s)	942, 971
PaeI	GCATGC	1 cut(s)	942
PaeR7I	CTCGAG	1 cut(s)	428
PcsI	WCGNNNNNNNCGW	1 cut(s)	669
PdiI	GCCGGC	1 cut(s)	685
PfeI	GAWTC	5 cut(s)	55, 119, 483, 517, 580
PkrI	GCNGC	8 cut(s)	220, 267, 447, 689, 692, 737, 790, 879
PleI	GAGTC	2 cut(s)	566, 868
PpsI	GAGTC	2 cut(s)	566, 868
PshBI	ATTAAT	1 cut(s)	281
Psp6I	CCWGG	1 cut(s)	654
PspGI	CCWGG	1 cut(s)	654
PspN4I	GGNNCC	2 cut(s)	697, 916
PspPI	GGNCC	1 cut(s)	915
PspXI	VCTCGAGB	1 cut(s)	428
RsaI	GTAC	1 cut(s)	904
RsaNI	GTAC	1 cut(s)	903
RseI	CAYNNNNRTG	1 cut(s)	27
SalI	GTCGAC	1 cut(s)	136
SaqAI	TTAA	3 cut(s)	281, 666, 972
SatI	GCNGC	8 cut(s)	219, 266, 446, 688, 691, 736, 789, 878
Sau3AI	GATC	2 cut(s)	381, 673
Sau96I	GGNCC	1 cut(s)	915
SchI	GAGTC	2 cut(s)	567, 869
ScrFI	CCNGG	2 cut(s)	259, 656
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	4 cut(s)	16, 537, 666, 712
SfaNI	GCATC	1 cut(s)	712
Sfr274I	CTCGAG	1 cut(s)	428
SgrAI	CRCCGGYG	1 cut(s)	683
SinI	GGWCC	1 cut(s)	915
SlaI	CTCGAG	1 cut(s)	428
SmiMI	CAYNNNNRTG	1 cut(s)	27
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
SphI	GCATGC	1 cut(s)	942
Sse9I	AATT	8 cut(s)	278, 298, 324, 538, 625, 640, 928, 973
SspI	AATATT	1 cut(s)	100
StyD4I	CCNGG	2 cut(s)	257, 654
StyI	CCWWGG	2 cut(s)	85, 699
TaaI	ACNGT	2 cut(s)	107, 227
TaiI	ACGT	1 cut(s)	666
TaqI	TCGA	5 cut(s)	137, 339, 384, 429, 452
TasI	AATT	8 cut(s)	278, 298, 324, 538, 625, 640, 928, 973
TatI	WGTACW	1 cut(s)	902
TauI	GCSGC	4 cut(s)	221, 268, 690, 791
TfiI	GAWTC	5 cut(s)	55, 119, 483, 517, 580
Tru1I	TTAA	3 cut(s)	281, 666, 972
Tru9I	TTAA	3 cut(s)	281, 666, 972
TscAI	CASTG	3 cut(s)	112, 232, 967
TseI	GCWGC	4 cut(s)	445, 690, 735, 877
TspDTI	ATGAA	4 cut(s)	61, 221, 382, 762
TspGWI	ACGGA	1 cut(s)	422
TspRI	CASTG	3 cut(s)	112, 232, 967
VpaK11BI	GGWCC	1 cut(s)	915
VspI	ATTAAT	1 cut(s)	281
XapI	RAATTY	1 cut(s)	324
XceI	RCATGY	2 cut(s)	942, 971
XhoI	CTCGAG	1 cut(s)	428
XmiI	GTMKAC	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.