Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011165

Physical Location & Seq

Genomic Coordinates Forward (+)

10878817 .. 10882052

Gene Structure 3236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G20130.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGGCTTCTTCAGTCTCTCTTCAGTTCCTGACCAACACCTTTATCTCCAAACCTCAGGGTTTCTGCAACGGAATTGTGTCAGCACCAAGACCCAGAAGCAATTTATTAAGAGACAGACAAAATGGTGTACGACCCATCAAAGTTGCGTCTATTGAGACACAACCTTTCCCTCTGTTTCAATCTCCTGCTTCCGAAGAATCTTCCTCGTCCGAGCTGGAGACAGCAGATCCGGATTTCTACAAAATTGGCTATGTTCGAAGTGTGAGAGCTTATGGAGTTGAGTTTAAAGAAGGTCCAGATGGTTTTGGTGTCTATGCTTCTAAGGATATCGAACCTCGCCGTCGAGCTAGAGTGATTATGGAGATTCCTCTTGAACTGATGATAACCATTAGACAGAAGCACCCTTGGATGTTTTTCCCTGATATTGTACCAATTGGTCATCCTATTTTCGATATCATTAACTCGACTGATCCTGAGATTGATTGGGATATCAGATTAGCGTGTCTTCTGTTATTCTCTTTTGATCGAGATGATCACTTCTGGCGGCTCTATGGCGATTTCCTGCCGGCTGCTGATGAGTGCAGCAGCTTGCTTTTAGCTACAGAGGAAGACCTTGCGGAGCTTCAAGATCCTGATCTTGTTTCAACTATCAGACAACAACAGAAACGAATCCTAGATTTTTGGGAAAAGAATTGGCATTCAGGTGTTCCTCTCAAAATCAAAAGGCTTGCCGAGGATCCAGAAAGATTCATATGGGCGGTTAGTATGGCACAGACACGATGCATCAGTATGCAAACTAGGGTCGGTGCTTTGGTTCAGGAATTAAATATGATGATTCCTTATGCTGACATGCTAAACCACTCATTTGAACCAAACTGTTTCCTACATTGGCGTCCTAAAGATCGCATGCTGGAGGTTATGTCAAATGCTGGTCAAGACATTAAGAAAGGCGAAGAGATGACGATTAATTACATGCCAGGCCAGAAAAACAACATGCTTATGGAAAGATACGGCTTCTCAACTCCTGTGAATCCGTGGGATGCTATAAAGTTCTCTGGAGATTCTCGCATCCATTTAAATTCCTTTTTATCGGTCTTCAATATTTATGGTCTTCCTGAAGAATATTACCATGACAGCGAGTTATCGAGGGGCGATACTTTTGTTGATGGAGCAGTTATCGCTGCAGCAAGAACATTACCTACTTGGTCAGACATAGATCTTCCTCCAATACCGAGTGCGGAAAGAAAAGCAGTTAAAGAATTGCAAGATGAATGTCGAAAGATGCTTGCGGAATATCCCACAACAGCAGAGCAAGACCAGAAGTTGCTAGATTCAATGTCAGAAGCAAGGACAACATTTGCAACAGCGGTTAAGTATAGAATGCACAGAAAGATGTTCATCGGAAAAATTATCAAGGCACTTGACATCTATCAAGAACGGTTACTCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0000427 GO:0000428 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006139 GO:0006351 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009058 GO:0009059 GO:0009295 GO:0009314 GO:0009416 GO:0009507 GO:0009508 GO:0009532 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009657 GO:0009658 GO:0009668 GO:0009987 GO:0010027 GO:0010467 GO:0016043 GO:0016070 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018026 GO:0018130 GO:0018193 GO:0018205 GO:0019438 GO:0019538 GO:0030880 GO:0031976 GO:0031984 GO:0032259 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042646 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0061024 GO:0061695 GO:0071704 GO:0071840 GO:0090304 GO:0097659 GO:0140096 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

483

Amino Acids

55.61

Weight (kDa)

5.4

Isoelectric Point (pI)

50.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SET	PF00856	154 - 205	4.1e-10	SET domain
Rubis-subs-bind	PF09273	293 - 345	1.1e-06	Rubisco LSMT substrate-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20130 AT4G20130 AT4G20130
fragaria_vesca	FvH4_3g13130 FvH4_3g13130 FvH4_3g13130 FvH4_3g13130 FvH4_3g13130
malus_domestica	MD10G1226200.v1.1
prunus_persica	Prupe.4G119100_v2.0.a1 Prupe.4G119100_v2.0.a1
pyrus_communis	pycom10g19010
rosa_chinensis	RchiOBHm_Chr5g0021381
rosa_laevigata	RLG00000032608
rosa_multiflora	Rmu_sc0004847.1_g000020
rosa_roxburghii	Rroxscaffold_1G00057160
rosa_rugosa	Rorug05G0066700 Rorug05G0066800
rosa_samantha	Rh5CG169100
rosa_wichuraiana	Rw5G013880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	229
AciI	CCGC	6 cut(s)	544, 617, 758, 1238, 1289, 1367
AclWI	GGATC	5 cut(s)	221, 464, 623, 731, 744
AcsI	RAATTY	1 cut(s)	1078
AcuI	CTGAAG	2 cut(s)	5, 1137
AcyI	GRCGYC	1 cut(s)	892
AfaI	GTAC	2 cut(s)	129, 429
AgsI	TTSAA	7 cut(s)	179, 374, 626, 645, 869, 1099, 1335
AjnI	CCWGG	1 cut(s)	976
AluBI	AGCT	6 cut(s)	214, 269, 347, 588, 599, 622
AluI	AGCT	6 cut(s)	214, 269, 347, 588, 599, 622
Alw26I	GTCTC	4 cut(s)	19, 105, 149, 212
AlwI	GGATC	5 cut(s)	221, 464, 623, 731, 744
AlwNI	CAGNNNCTG	1 cut(s)	28
Aor13HI	TCCGGA	1 cut(s)	229
AoxI	GGCC	1 cut(s)	979
ApeKI	GCWGC	5 cut(s)	569, 582, 585, 1181, 1184
ApoI	RAATTY	1 cut(s)	1078
AseI	ATTAAT	1 cut(s)	966
AspS9I	GGNCC	1 cut(s)	293
AsuII	TTCGAA	1 cut(s)	256
AvaII	GGWCC	1 cut(s)	293
AxyI	CCTNAGG	1 cut(s)	54
BaeI	ACNNNNGTAYC	2 cut(s)	1146, 1179
BamHI	GGATCC	1 cut(s)	736
BbsI	GAAGAC	4 cut(s)	497, 615, 1087, 1103
BbvI	GCAGC	5 cut(s)	556, 594, 597, 1168, 1196
BccI	CCATC	3 cut(s)	143, 293, 1160
BceAI	ACGGC	2 cut(s)	324, 1027
BciT130I	CCWGG	1 cut(s)	978
BclI	TGATCA	1 cut(s)	532
BcoDI	GTCTC	4 cut(s)	19, 105, 149, 212
BfaI	CTAG	4 cut(s)	348, 674, 798, 1328
BfmI	CTRYAG	2 cut(s)	600, 1182
BglII	AGATCT	1 cut(s)	1216
BisI	GCNGC	6 cut(s)	545, 570, 583, 586, 1182, 1185
BlsI	GCNGC	6 cut(s)	546, 571, 584, 587, 1183, 1186
Bme1390I	CCNGG	1 cut(s)	978
Bme18I	GGWCC	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	1 cut(s)	738
BmrFI	CCNGG	1 cut(s)	978
BmsI	GCATC	5 cut(s)	770, 792, 1030, 1077, 1272
BpiI	GAAGAC	4 cut(s)	497, 615, 1087, 1103
BpmI	CTGGAG	3 cut(s)	236, 932, 1077
Bpu14I	TTCGAA	1 cut(s)	256
BsaBI	GATNNNNATC	2 cut(s)	633, 1397
BsaHI	GRCGYC	1 cut(s)	892
BsaJI	CCNNGG	3 cut(s)	404, 732, 1034
BsaWI	WCCGGW	1 cut(s)	229
BsaXI	ACNNNNNCTCC	2 cut(s)	905, 935
Bse118I	RCCGGY	1 cut(s)	565
Bse21I	CCTNAGG	1 cut(s)	54
Bse8I	GATNNNNATC	2 cut(s)	633, 1397
BseAI	TCCGGA	1 cut(s)	229
BseBI	CCWGG	1 cut(s)	978
BseDI	CCNNGG	3 cut(s)	404, 732, 1034
BseGI	GGATG	4 cut(s)	414, 439, 1045, 1068
BseJI	GATNNNNATC	2 cut(s)	633, 1397
BseMII	CTCAG	2 cut(s)	68, 465
BseXI	GCAGC	5 cut(s)	556, 594, 597, 1168, 1196
BsgI	GTGCAG	1 cut(s)	601
BshFI	GGCC	1 cut(s)	981
BsiSI	CCGG	2 cut(s)	230, 566
BsmAI	GTCTC	4 cut(s)	19, 105, 149, 212
BsmI	GAATGC	2 cut(s)	697, 1386
BsnI	GGCC	1 cut(s)	981
Bsp119I	TTCGAA	1 cut(s)	256
Bsp13I	TCCGGA	1 cut(s)	229
Bsp143I	GATC	9 cut(s)	226, 469, 523, 532, 628, 634, 736, 901, 1216
BspACI	CCGC	6 cut(s)	544, 617, 758, 1238, 1289, 1367
BspANI	GGCC	1 cut(s)	981
BspCNI	CTCAG	2 cut(s)	67, 466
BspEI	TCCGGA	1 cut(s)	229
BspLI	GGNNCC	1 cut(s)	738
BspMAI	CTGCAG	1 cut(s)	1186
BspPI	GGATC	5 cut(s)	221, 464, 623, 731, 744
BspT104I	TTCGAA	1 cut(s)	256
BsrFI	RCCGGY	1 cut(s)	565
BssAI	RCCGGY	1 cut(s)	565
BssECI	CCNNGG	3 cut(s)	404, 732, 1034
BssMI	GATC	9 cut(s)	226, 469, 523, 532, 628, 634, 736, 901, 1216
BssNI	GRCGYC	1 cut(s)	892
BssT1I	CCWWGG	1 cut(s)	404
Bst2UI	CCWGG	1 cut(s)	978
Bst4CI	ACNGT	2 cut(s)	878, 1440
Bst6I	CTCTTC	2 cut(s)	24, 948
BstACI	GRCGYC	1 cut(s)	892
BstBI	TTCGAA	1 cut(s)	256
BstC8I	GCNNGC	5 cut(s)	567, 590, 729, 908, 1287
BstDEI	CTNAG	3 cut(s)	54, 321, 474
BstDSI	CCRYGG	1 cut(s)	1034
BstF5I	GGATG	4 cut(s)	414, 439, 1045, 1068
BstKTI	GATC	9 cut(s)	229, 472, 526, 535, 631, 637, 739, 904, 1219
BstMAI	GTCTC	4 cut(s)	19, 105, 149, 212
BstMBI	GATC	9 cut(s)	226, 469, 523, 532, 628, 634, 736, 901, 1216
BstMWI	GCNNNNNNNGC	1 cut(s)	1178
BstNI	CCWGG	1 cut(s)	978
BstNSI	RCATGY	4 cut(s)	853, 910, 976, 997
BstSCI	CCNGG	1 cut(s)	976
BstSFI	CTRYAG	2 cut(s)	600, 1182
BstV1I	GCAGC	5 cut(s)	556, 594, 597, 1168, 1196
BstV2I	GAAGAC	4 cut(s)	497, 615, 1087, 1103
BstX2I	RGATCY	4 cut(s)	226, 628, 736, 1216
BstYI	RGATCY	4 cut(s)	226, 628, 736, 1216
Bsu36I	CCTNAGG	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	981
BtgI	CCRYGG	1 cut(s)	1034
BtsCI	GGATG	4 cut(s)	414, 439, 1045, 1068
Cac8I	GCNNGC	5 cut(s)	567, 590, 729, 908, 1287
CaiI	CAGNNNCTG	1 cut(s)	28
Cfr10I	RCCGGY	1 cut(s)	565
Cfr13I	GGNCC	1 cut(s)	293
CseI	GACGC	2 cut(s)	135, 881
Csp6I	GTAC	2 cut(s)	128, 428
CviAII	CATG	5 cut(s)	850, 907, 973, 994, 1130
CviQI	GTAC	2 cut(s)	128, 428
DdeI	CTNAG	3 cut(s)	54, 321, 474
DpnI	GATC	9 cut(s)	228, 471, 525, 534, 630, 636, 738, 903, 1218
DpnII	GATC	9 cut(s)	226, 469, 523, 532, 628, 634, 736, 901, 1216
DraI	TTTAAA	2 cut(s)	286, 1077
Eam1104I	CTCTTC	2 cut(s)	24, 948
EarI	CTCTTC	2 cut(s)	24, 948
Eco130I	CCWWGG	1 cut(s)	404
Eco32I	GATATC	3 cut(s)	328, 454, 490
Eco47I	GGWCC	1 cut(s)	293
Eco57I	CTGAAG	2 cut(s)	5, 1137
Eco81I	CCTNAGG	1 cut(s)	54
EcoRII	CCWGG	1 cut(s)	976
EcoRV	GATATC	3 cut(s)	328, 454, 490
EcoT14I	CCWWGG	1 cut(s)	404
EcoT22I	ATGCAT	1 cut(s)	785
ErhI	CCWWGG	1 cut(s)	404
FaeI	CATG	5 cut(s)	853, 910, 976, 997, 1133
FatI	CATG	5 cut(s)	849, 906, 972, 993, 1129
FauNDI	CATATG	1 cut(s)	752
FbaI	TGATCA	1 cut(s)	532
Fnu4HI	GCNGC	6 cut(s)	545, 570, 583, 586, 1182, 1185
FokI	GGATG	4 cut(s)	421, 426, 1052, 1055
Fsp4HI	GCNGC	6 cut(s)	545, 570, 583, 586, 1182, 1185
FspBI	CTAG	4 cut(s)	348, 674, 798, 1328
GluI	GCNGC	6 cut(s)	545, 570, 583, 586, 1182, 1185
GsuI	CTGGAG	3 cut(s)	236, 932, 1077
HaeIII	GGCC	1 cut(s)	981
HapII	CCGG	2 cut(s)	230, 566
HgaI	GACGC	2 cut(s)	135, 881
Hin1I	GRCGYC	1 cut(s)	892
Hin1II	CATG	5 cut(s)	853, 910, 976, 997, 1133
HinfI	GANTC	8 cut(s)	197, 364, 669, 747, 835, 1030, 1061, 1331
HpaII	CCGG	2 cut(s)	230, 566
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188I	TCNGA	7 cut(s)	193, 211, 494, 653, 1210, 1342, 1403
Hpy8I	GTNNAC	1 cut(s)	128
Hpy99I	CGWCG	1 cut(s)	345
HpyAV	CCTTC	1 cut(s)	284
HpyCH4III	ACNGT	2 cut(s)	878, 1440
HpyCH4V	TGCA	8 cut(s)	66, 582, 783, 793, 1184, 1264, 1361, 1384
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1178
HpyF3I	CTNAG	3 cut(s)	54, 321, 474
Hsp92I	GRCGYC	1 cut(s)	892
Hsp92II	CATG	5 cut(s)	853, 910, 976, 997, 1133
Kpn2I	TCCGGA	1 cut(s)	229
KroI	GCCGGC	1 cut(s)	565
KroNI	GCCGGC	1 cut(s)	567
Ksp22I	TGATCA	1 cut(s)	532
Kzo9I	GATC	9 cut(s)	226, 469, 523, 532, 628, 634, 736, 901, 1216
LmnI	GCTCC	2 cut(s)	619, 1169
Lsp1109I	GCAGC	5 cut(s)	556, 594, 597, 1168, 1196
LweI	GCATC	5 cut(s)	770, 792, 1030, 1077, 1272
MaeI	CTAG	4 cut(s)	348, 674, 798, 1328
MaeIII	GTNAC	1 cut(s)	1440
MalI	GATC	9 cut(s)	228, 471, 525, 534, 630, 636, 738, 903, 1218
MboI	GATC	9 cut(s)	226, 469, 523, 532, 628, 634, 736, 901, 1216
MfeI	CAATTG	1 cut(s)	432
MflI	RGATCY	4 cut(s)	226, 628, 736, 1216
Mph1103I	ATGCAT	1 cut(s)	785
MroI	TCCGGA	1 cut(s)	229
MroNI	GCCGGC	1 cut(s)	565
MseI	TTAA	9 cut(s)	107, 285, 459, 824, 942, 966, 1076, 1254, 1371
MslI	CAYNNNNRTG	3 cut(s)	702, 788, 998
MspA1I	CMGCKG	1 cut(s)	1367
MspI	CCGG	2 cut(s)	230, 566
MspR9I	CCNGG	1 cut(s)	978
MunI	CAATTG	1 cut(s)	432
Mva1269I	GAATGC	2 cut(s)	697, 1386
MvaI	CCWGG	1 cut(s)	978
MwoI	GCNNNNNNNGC	1 cut(s)	1178
NaeI	GCCGGC	1 cut(s)	567
NdeI	CATATG	1 cut(s)	752
NdeII	GATC	9 cut(s)	226, 469, 523, 532, 628, 634, 736, 901, 1216
NgoMIV	GCCGGC	1 cut(s)	565
NlaIII	CATG	5 cut(s)	853, 910, 976, 997, 1133
NlaIV	GGNNCC	1 cut(s)	738
NmeAIII	GCCGAG	1 cut(s)	757
NsiI	ATGCAT	1 cut(s)	785
NspI	RCATGY	4 cut(s)	853, 910, 976, 997
NspV	TTCGAA	1 cut(s)	256
PaeI	GCATGC	1 cut(s)	910
PctI	GAATGC	2 cut(s)	697, 1386
PdiI	GCCGGC	1 cut(s)	567
PfeI	GAWTC	8 cut(s)	197, 364, 669, 747, 835, 1030, 1061, 1331
PkrI	GCNGC	6 cut(s)	546, 571, 584, 587, 1183, 1186
PshBI	ATTAAT	1 cut(s)	966
Psp6I	CCWGG	1 cut(s)	976
PspGI	CCWGG	1 cut(s)	976
PspN4I	GGNNCC	1 cut(s)	738
PspPI	GGNCC	1 cut(s)	293
PsrI	GAACNNNNNNTAC	2 cut(s)	1183, 1215
PstI	CTGCAG	1 cut(s)	1186
PstNI	CAGNNNCTG	1 cut(s)	28
PsuI	RGATCY	4 cut(s)	226, 628, 736, 1216
RsaI	GTAC	2 cut(s)	129, 429
RsaNI	GTAC	2 cut(s)	128, 428
RseI	CAYNNNNRTG	3 cut(s)	702, 788, 998
SaqAI	TTAA	9 cut(s)	107, 285, 459, 824, 942, 966, 1076, 1254, 1371
SatI	GCNGC	6 cut(s)	545, 570, 583, 586, 1182, 1185
Sau3AI	GATC	9 cut(s)	226, 469, 523, 532, 628, 634, 736, 901, 1216
Sau96I	GGNCC	1 cut(s)	293
ScrFI	CCNGG	1 cut(s)	978
SfaNI	GCATC	5 cut(s)	770, 792, 1030, 1077, 1272
SfcI	CTRYAG	2 cut(s)	600, 1182
SfuI	TTCGAA	1 cut(s)	256
SinI	GGWCC	1 cut(s)	293
SmiI	ATTTAAAT	1 cut(s)	1077
SmiMI	CAYNNNNRTG	3 cut(s)	702, 788, 998
SphI	GCATGC	1 cut(s)	910
SsiI	CCGC	6 cut(s)	544, 617, 758, 1238, 1289, 1367
SspI	AATATT	2 cut(s)	1102, 1124
SspMI	CTAG	4 cut(s)	348, 674, 798, 1328
StyD4I	CCNGG	1 cut(s)	976
StyI	CCWWGG	1 cut(s)	404
SwaI	ATTTAAAT	1 cut(s)	1077
TaaI	ACNGT	2 cut(s)	878, 1440
TaqI	TCGA	8 cut(s)	256, 330, 343, 450, 464, 526, 1145, 1276
TaqII	GACCGA	1 cut(s)	1081
TauI	GCSGC	1 cut(s)	547
TfiI	GAWTC	8 cut(s)	197, 364, 669, 747, 835, 1030, 1061, 1331
Tru1I	TTAA	9 cut(s)	107, 285, 459, 824, 942, 966, 1076, 1254, 1371
Tru9I	TTAA	9 cut(s)	107, 285, 459, 824, 942, 966, 1076, 1254, 1371
TseI	GCWGC	5 cut(s)	569, 582, 585, 1181, 1184
TspDTI	ATGAA	3 cut(s)	739, 1284, 1387
TspGWI	ACGGA	2 cut(s)	84, 1023
VpaK11BI	GGWCC	1 cut(s)	293
VspI	ATTAAT	1 cut(s)	966
XapI	RAATTY	1 cut(s)	1078
XceI	RCATGY	4 cut(s)	853, 910, 976, 997
XspI	CTAG	4 cut(s)	348, 674, 798, 1328
Zsp2I	ATGCAT	1 cut(s)	785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.