FvH4_3g13130

Ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0005181
Physical Location & Seq
Reverse (-)
7839315 .. 7845515
6201 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g13130.t3

Sequence Viewer

Length: 1107 bp
ATGGTATTGAATTTAAAGAAGGTCCAAATGGGTTTGGAGTTTATGCTTCCAAGGATGTTGAACCACTTCGCCGCGCTAGGTTCACAGGTGATAATGGAAATTCCTCTAGAACTGATGTTAACTATAAGCCAAAAGCTCCCCTGGATGTTTTTCCCAGATATAGTTCCTGTGGGTCATCCAATATTTGATATCATCAACTCAACTGATCCAGAGACAGGTTGGGATCTAAGGTTAGCTTGCCTTCTTTTGTATGCATTTGATCGGGAGGATAACTTTTGGCAGTTGTATGGTGATTTTTTACCCAGTGCAGATGAGTGCCCCAGTCTGCTTTTAGCTAGTGAGGAGGAGCTTTCAGAACTACAAGATCCCAATCTTGCTTCAACAATGAGAGAACAGCACCGCCGAGCTCTGGAATTCTGGGAGAAAAATTGGCATTCTGGTGTACCCCTGAAGATTAAACGCCTCGCTCGTGATTCTGAGAGATTCATTTGGGCTCTGAACATGCTAAATCATTCTTTCCAGCCAAATTGTTTTCTCCATTGGCGGTTTAAGGATCGTATGCTTGAAGTAATGATAAACGCTGGACAACGGATTAAGAAAGGTGATGAGATGACAATCAATTACATGAGTGGACAACAGAACCACATGTTGATGCAAAGATATGGCTTTTCTTCATCTGTGAATCCATGGGATGTTATTCAATTCTCTGGAAATGCACAAATTCATTTGGATTCCTTCTTGTCTGTATTCAATATTTCAGGACTTCCCCAAGAATACTATCATAACAATCGCCTATCTAGTGGAGGAGATAGCTTTGTTGACGGAGCTGTCATTGCAGCAGCAAGAACATTGCCTACTTGGTCAGATGGGGATGTGCCTCCAATCCCAAGCATGGAAAGAAGAGCAATAAAGGAATTACAGGAAGAATGCAGACAGATGCTTGCCGCATTTCCTACCAACTCTACTGAAGACCAAAATATCCTAGATTCTATTCCAGACGCTACCAGGACACTTGAAGCTGTTATCAAGTATAGATTGCACCGGAAATTGTACATCAAGAAAGTGATGCAGGCACTGGATTTGTATCAAGAACGAATATTATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rubis-subs-bind SET

Protein Analysis

369

Amino Acids

42.69

Weight (kDa)

5.52

Isoelectric Point (pI)

44.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 184 - 236 1.1e-09 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 827
AccII CGCG 1 cut(s) 74
AciI CCGC 4 cut(s) 72, 400, 544, 945
AclWI GGATC 4 cut(s) 200, 231, 359, 561
AcsI RAATTY 4 cut(s) 10, 99, 413, 720
AcuI CTGAAG 2 cut(s) 470, 987
AfaI GTAC 2 cut(s) 444, 1052
AfiI CCNNNNNNNGG 3 cut(s) 215, 409, 892
AflIII ACRYGT 1 cut(s) 645
AgsI TTSAA 7 cut(s) 10, 61, 381, 566, 701, 751, 1016
AjnI CCWGG 2 cut(s) 140, 1004
AluBI AGCT 8 cut(s) 136, 236, 335, 349, 407, 813, 827, 1019
AluI AGCT 8 cut(s) 136, 236, 335, 349, 407, 813, 827, 1019
Alw21I GWGCWC 1 cut(s) 409
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 4 cut(s) 200, 231, 359, 561
AlwNI CAGNNNCTG 1 cut(s) 1075
ApeKI GCWGC 2 cut(s) 836, 839
ApoI RAATTY 4 cut(s) 10, 99, 413, 720
Asp700I GAANNNNTTC 1 cut(s) 65
AspLEI GCGC 1 cut(s) 76
AspS9I GGNCC 1 cut(s) 22
AsuHPI GGTGA 3 cut(s) 100, 302, 614
AvaII GGWCC 1 cut(s) 22
BaeGI GKGCMC 1 cut(s) 320
BanII GRGCYC 2 cut(s) 409, 496
BauI CACGAG 1 cut(s) 468
BbsI GAAGAC 1 cut(s) 975
Bbv12I GWGCWC 1 cut(s) 409
BbvI GCAGC 2 cut(s) 848, 851
BccI CCATC 1 cut(s) 860
BciT130I CCWGG 2 cut(s) 142, 1006
BcoDI GTCTC 1 cut(s) 206
BfaI CTAG 5 cut(s) 77, 107, 336, 798, 983
BisI GCNGC 4 cut(s) 72, 837, 840, 945
BlsI GCNGC 4 cut(s) 73, 838, 841, 946
Bme1390I CCNGG 2 cut(s) 142, 1006
Bme18I GGWCC 1 cut(s) 22
BmgT120I GGNCC 1 cut(s) 22
BmrFI CCNGG 2 cut(s) 142, 1006
BmrI ACTGGG 2 cut(s) 297, 315
BmsI GCATC 3 cut(s) 642, 927, 1056
BmuI ACTGGG 2 cut(s) 297, 315
BpiI GAAGAC 1 cut(s) 975
BsaBI GATNNNNATC 3 cut(s) 369, 614, 1083
BsaJI CCNNGG 3 cut(s) 50, 140, 686
BsaWI WCCGGW 1 cut(s) 1041
Bsc4I CCNNNNNNNGG 3 cut(s) 215, 409, 892
Bse1I ACTGG 3 cut(s) 303, 321, 1080
Bse3DI GCAATG 2 cut(s) 831, 848
Bse8I GATNNNNATC 3 cut(s) 369, 614, 1083
BseBI CCWGG 2 cut(s) 142, 1006
BseDI CCNNGG 3 cut(s) 50, 140, 686
BseGI GGATG 5 cut(s) 60, 150, 175, 697, 877
BseJI GATNNNNATC 3 cut(s) 369, 614, 1083
BseLI CCNNNNNNNGG 3 cut(s) 215, 409, 892
BseMI GCAATG 2 cut(s) 831, 848
BseMII CTCAG 1 cut(s) 468
BseNI ACTGG 3 cut(s) 303, 321, 1080
BseRI GAGGAG 3 cut(s) 356, 359, 819
BseSI GKGCMC 1 cut(s) 320
BseXI GCAGC 2 cut(s) 848, 851
BsgI GTGCAG 1 cut(s) 327
Bsh1236I CGCG 1 cut(s) 74
BsiHKAI GWGCWC 1 cut(s) 409
BsiSI CCGG 1 cut(s) 1042
BslI CCNNNNNNNGG 3 cut(s) 215, 409, 892
BsmAI GTCTC 1 cut(s) 206
BsmI GAATGC 2 cut(s) 433, 932
Bsp1286I GDGCHC 3 cut(s) 320, 409, 496
Bsp1407I TGTACA 1 cut(s) 1050
Bsp143I GATC 5 cut(s) 205, 223, 259, 364, 553
Bsp19I CCATGG 1 cut(s) 686
BspACI CCGC 4 cut(s) 72, 400, 544, 945
BspCNI CTCAG 1 cut(s) 469
BspFNI CGCG 1 cut(s) 74
BspPI GGATC 4 cut(s) 200, 231, 359, 561
BspQI GCTCTTC 1 cut(s) 895
BsrDI GCAATG 2 cut(s) 831, 848
BsrGI TGTACA 1 cut(s) 1050
BsrI ACTGG 3 cut(s) 303, 321, 1080
BssECI CCNNGG 3 cut(s) 50, 140, 686
BssMI GATC 5 cut(s) 205, 223, 259, 364, 553
BssSI CACGAG 1 cut(s) 468
BssT1I CCWWGG 2 cut(s) 50, 686
Bst2BI CACGAG 1 cut(s) 468
Bst2UI CCWGG 2 cut(s) 142, 1006
Bst6I CTCTTC 1 cut(s) 895
BstAUI TGTACA 1 cut(s) 1050
BstC8I GCNNGC 3 cut(s) 238, 942, 1071
BstDEI CTNAG 2 cut(s) 227, 477
BstDSI CCRYGG 1 cut(s) 686
BstF5I GGATG 5 cut(s) 60, 150, 175, 697, 877
BstFNI CGCG 1 cut(s) 74
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 5 cut(s) 208, 226, 262, 367, 556
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 5 cut(s) 205, 223, 259, 364, 553
BstMWI GCNNNNNNNGC 1 cut(s) 833
BstNI CCWGG 2 cut(s) 142, 1006
BstNSI RCATGY 2 cut(s) 505, 649
BstSCI CCNGG 2 cut(s) 140, 1004
BstSLI GKGCMC 1 cut(s) 320
BstUI CGCG 1 cut(s) 74
BstV1I GCAGC 2 cut(s) 848, 851
BstV2I GAAGAC 1 cut(s) 975
BstX2I RGATCY 2 cut(s) 223, 364
BstYI RGATCY 2 cut(s) 223, 364
BtgI CCRYGG 1 cut(s) 686
BtsCI GGATG 5 cut(s) 60, 150, 175, 697, 877
BtsIMutI CAGTG 2 cut(s) 310, 1073
Cac8I GCNNGC 3 cut(s) 238, 942, 1071
CaiI CAGNNNCTG 1 cut(s) 1075
CfoI GCGC 1 cut(s) 76
Cfr13I GGNCC 1 cut(s) 22
CseI GACGC 1 cut(s) 1007
Csp6I GTAC 2 cut(s) 443, 1051
CviAII CATG 5 cut(s) 502, 625, 646, 687, 892
CviQI GTAC 2 cut(s) 443, 1051
DdeI CTNAG 2 cut(s) 227, 477
DpnI GATC 5 cut(s) 207, 225, 261, 366, 555
DpnII GATC 5 cut(s) 205, 223, 259, 364, 553
DraI TTTAAA 1 cut(s) 15
DrdI GACNNNNNNGTC 1 cut(s) 827
DseDI GACNNNNNNGTC 1 cut(s) 827
Eam1104I CTCTTC 1 cut(s) 895
EarI CTCTTC 1 cut(s) 895
Ecl136II GAGCTC 1 cut(s) 407
Eco130I CCWWGG 2 cut(s) 50, 686
Eco24I GRGCYC 2 cut(s) 409, 496
Eco32I GATATC 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 22
Eco53kI GAGCTC 1 cut(s) 407
Eco57I CTGAAG 2 cut(s) 470, 987
EcoICRI GAGCTC 1 cut(s) 407
EcoRI GAATTC 1 cut(s) 413
EcoRII CCWGG 2 cut(s) 140, 1004
EcoRV GATATC 1 cut(s) 190
EcoT14I CCWWGG 2 cut(s) 50, 686
EcoT22I ATGCAT 1 cut(s) 256
EcoT38I GRGCYC 2 cut(s) 409, 496
ErhI CCWWGG 2 cut(s) 50, 686
FaeI CATG 5 cut(s) 505, 628, 649, 690, 895
FalI AAGNNNNNCTT 2 cut(s) 220, 252
FatI CATG 5 cut(s) 501, 624, 645, 686, 891
Fnu4HI GCNGC 4 cut(s) 72, 837, 840, 945
FokI GGATG 5 cut(s) 67, 157, 162, 704, 884
FriOI GRGCYC 2 cut(s) 409, 496
Fsp4HI GCNGC 4 cut(s) 72, 837, 840, 945
FspBI CTAG 5 cut(s) 77, 107, 336, 798, 983
GlaI GCGC 1 cut(s) 75
GluI GCNGC 4 cut(s) 72, 837, 840, 945
HapII CCGG 1 cut(s) 1042
HgaI GACGC 1 cut(s) 1007
HhaI GCGC 1 cut(s) 76
Hin1II CATG 5 cut(s) 505, 628, 649, 690, 895
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HincII GTYRAC 2 cut(s) 120, 820
HindII GTYRAC 2 cut(s) 120, 820
HinfI GANTC 5 cut(s) 473, 483, 682, 731, 986
HpaI GTTAAC 1 cut(s) 120
HpaII CCGG 1 cut(s) 1042
HphI GGTGA 3 cut(s) 100, 302, 614
Hpy166II GTNNAC 5 cut(s) 83, 120, 443, 632, 820
Hpy188I TCNGA 5 cut(s) 355, 478, 498, 865, 1106
Hpy8I GTNNAC 5 cut(s) 83, 120, 443, 632, 820
HpyAV CCTTC 3 cut(s) 13, 251, 745
HpyCH4V TGCA 8 cut(s) 254, 308, 655, 716, 836, 930, 1039, 1069
HpyF10VI GCNNNNNNNGC 1 cut(s) 833
HpyF3I CTNAG 2 cut(s) 227, 477
Hsp92II CATG 5 cut(s) 505, 628, 649, 690, 895
HspAI GCGC 1 cut(s) 74
KspAI GTTAAC 1 cut(s) 120
Kzo9I GATC 5 cut(s) 205, 223, 259, 364, 553
LguI GCTCTTC 1 cut(s) 895
LmnI GCTCC 3 cut(s) 141, 346, 824
Lsp1109I GCAGC 2 cut(s) 848, 851
LweI GCATC 3 cut(s) 642, 927, 1056
MaeI CTAG 5 cut(s) 77, 107, 336, 798, 983
MalI GATC 5 cut(s) 207, 225, 261, 366, 555
MboI GATC 5 cut(s) 205, 223, 259, 364, 553
MboII GAAGA 5 cut(s) 463, 663, 912, 935, 980
MflI RGATCY 2 cut(s) 223, 364
MhlI GDGCHC 3 cut(s) 320, 409, 496
MnlI CCTC 7 cut(s) 114, 259, 334, 337, 473, 797, 888
Mph1103I ATGCAT 1 cut(s) 256
MroXI GAANNNNTTC 1 cut(s) 65
MseI TTAA 5 cut(s) 14, 119, 456, 549, 594
MslI CAYNNNNRTG 2 cut(s) 438, 650
MspI CCGG 1 cut(s) 1042
MspR9I CCNGG 2 cut(s) 142, 1006
Mva1269I GAATGC 2 cut(s) 433, 932
MvaI CCWGG 2 cut(s) 142, 1006
MvnI CGCG 1 cut(s) 74
MwoI GCNNNNNNNGC 1 cut(s) 833
NcoI CCATGG 1 cut(s) 686
NdeII GATC 5 cut(s) 205, 223, 259, 364, 553
NlaIII CATG 5 cut(s) 505, 628, 649, 690, 895
NmeAIII GCCGAG 1 cut(s) 428
NsiI ATGCAT 1 cut(s) 256
NspI RCATGY 2 cut(s) 505, 649
PciI ACATGT 1 cut(s) 645
PciSI GCTCTTC 1 cut(s) 895
PcsI WCGNNNNNNNCGW 1 cut(s) 466
PctI GAATGC 2 cut(s) 433, 932
PdmI GAANNNNTTC 1 cut(s) 65
PfeI GAWTC 5 cut(s) 473, 483, 682, 731, 986
PkrI GCNGC 4 cut(s) 73, 838, 841, 946
PscI ACATGT 1 cut(s) 645
Psp124BI GAGCTC 1 cut(s) 409
Psp6I CCWGG 2 cut(s) 140, 1004
PspGI CCWGG 2 cut(s) 140, 1004
PspPI GGNCC 1 cut(s) 22
PsrI GAACNNNNNNTAC 2 cut(s) 838, 870
PstNI CAGNNNCTG 1 cut(s) 1075
PsuI RGATCY 2 cut(s) 223, 364
RsaI GTAC 2 cut(s) 444, 1052
RsaNI GTAC 2 cut(s) 443, 1051
RseI CAYNNNNRTG 2 cut(s) 438, 650
SacI GAGCTC 1 cut(s) 409
SapI GCTCTTC 1 cut(s) 895
SaqAI TTAA 5 cut(s) 14, 119, 456, 549, 594
SatI GCNGC 4 cut(s) 72, 837, 840, 945
Sau3AI GATC 5 cut(s) 205, 223, 259, 364, 553
Sau96I GGNCC 1 cut(s) 22
ScrFI CCNGG 2 cut(s) 142, 1006
SduI GDGCHC 3 cut(s) 320, 409, 496
SfaNI GCATC 3 cut(s) 642, 927, 1056
SinI GGWCC 1 cut(s) 22
SmiMI CAYNNNNRTG 2 cut(s) 438, 650
SsiI CCGC 4 cut(s) 72, 400, 544, 945
SspI AATATT 3 cut(s) 183, 754, 1098
SspMI CTAG 5 cut(s) 77, 107, 336, 798, 983
SstI GAGCTC 1 cut(s) 409
StyD4I CCNGG 2 cut(s) 140, 1004
StyI CCWWGG 2 cut(s) 50, 686
TatI WGTACW 1 cut(s) 1050
TauI GCSGC 2 cut(s) 74, 947
TfiI GAWTC 5 cut(s) 473, 483, 682, 731, 986
Tru1I TTAA 5 cut(s) 14, 119, 456, 549, 594
Tru9I TTAA 5 cut(s) 14, 119, 456, 549, 594
TscAI CASTG 2 cut(s) 310, 1080
TseI GCWGC 2 cut(s) 836, 839
TspDTI ATGAA 3 cut(s) 475, 663, 713
TspGWI ACGGA 2 cut(s) 604, 837
TspRI CASTG 2 cut(s) 310, 1080
VpaK11BI GGWCC 1 cut(s) 22
XapI RAATTY 4 cut(s) 10, 99, 413, 720
XbaI TCTAGA 1 cut(s) 106
XceI RCATGY 2 cut(s) 505, 649
XcmI CCANNNNNNNNNTGG 1 cut(s) 216
XmnI GAANNNNTTC 1 cut(s) 65
XspI CTAG 5 cut(s) 77, 107, 336, 798, 983
Zsp2I ATGCAT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.