Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0005181

Physical Location & Seq

Genomic Coordinates Forward (+)

37696491 .. 37697355

Gene Structure 865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1244700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGATGCTCCCCAAGACCCAGAAACTATTTCCCCACAAAAGACACAGAGAAAGGCGTCCGCTTCCAACCCATTAAAGCCAAAGCTGCCACTGAGGCTCCTCCATTTTCTCTCTTTCAGCCTCCACAAGCTGAGGACTCTCCCTTTGGAGCCAGCAGACCCCGATTTCTACAAGATAGGGTACGTTAGAAGTATGAGAGCTTATGGATTTGAATTTAAAGAAGGGCCAGATGGGTTTGGAGTTTATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

84

Amino Acids

9.45

Weight (kDa)

9.35

Isoelectric Point (pI)

37.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005181)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13130
malus_domestica	MD05G1244700.v1.1
pyrus_communis	pycom05g22120
rosa_chinensis	RchiOBHm_Chr1g0331441 RchiOBHm_Chr1g0378801 RchiOBHm_Chr2g0167351 RchiOBHm_Chr3g0456081 RchiOBHm_Chr3g0482001 RchiOBHm_Chr5g0063511
rosa_laevigata	RLG00000008600
rosa_multiflora	Rmu_sc0001208.1_g000033
rosa_roxburghii	Rroxscaffold_4G00300020
rosa_rugosa	Rorug02G0631000 Rorug05G0525600 Rorug05G0556200 Rorug06G0064800 Rorug06G0243200 Rorug07G0201200 Rorug07G0222900
rosa_samantha	Rh1BG283100 Rh1DG314900 Rh3AG245400 Rh3DG323100 Rh5BG155400 Rh5DG155900 Rh6BG246300 Rh7DG405100
rosa_wichuraiana	Rw2G025960 Rw4G010270 Rw5G028080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	60
AcsI	RAATTY	1 cut(s)	212
AcyI	GRCGYC	1 cut(s)	56
AfaI	GTAC	1 cut(s)	182
AgsI	TTSAA	1 cut(s)	212
AluBI	AGCT	3 cut(s)	85, 130, 200
AluI	AGCT	3 cut(s)	85, 130, 200
AoxI	GGCC	1 cut(s)	224
ApeKI	GCWGC	1 cut(s)	85
ApoI	RAATTY	1 cut(s)	212
ArsI	GACNNNNNNTTYG	2 cut(s)	127, 159
AspS9I	GGNCC	1 cut(s)	224
BbvCI	CCTCAGC	1 cut(s)	131
BbvI	GCAGC	1 cut(s)	72
BccI	CCATC	1 cut(s)	224
BglI	GCCNNNNNGGC	1 cut(s)	94
BisI	GCNGC	1 cut(s)	86
BlsI	GCNGC	1 cut(s)	87
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	2 cut(s)	98, 150
Bpu10I	CCTNAGC	1 cut(s)	131
BsaHI	GRCGYC	1 cut(s)	56
BsaXI	ACNNNNNCTCC	2 cut(s)	81, 111
BseGI	GGATG	1 cut(s)	10
BseMII	CTCAG	2 cut(s)	83, 122
BseRI	GAGGAG	1 cut(s)	89
BseXI	GCAGC	1 cut(s)	72
BshFI	GGCC	1 cut(s)	226
BsnI	GGCC	1 cut(s)	226
BspACI	CCGC	1 cut(s)	60
BspANI	GGCC	1 cut(s)	226
BspCNI	CTCAG	2 cut(s)	84, 123
BspLI	GGNNCC	2 cut(s)	98, 150
BssNI	GRCGYC	1 cut(s)	56
BstACI	GRCGYC	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	3 cut(s)	92, 131, 249
BstF5I	GGATG	1 cut(s)	10
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 94
BstV1I	GCAGC	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	89
Cac8I	GCNNGC	1 cut(s)	153
Cfr13I	GGNCC	1 cut(s)	224
CseI	GACGC	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	181
CviJI	RGCY	8 cut(s)	79, 85, 97, 120, 130, 151, 200, 226
CviKI_1	RGCY	8 cut(s)	79, 85, 97, 120, 130, 151, 200, 226
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	3 cut(s)	92, 131, 249
DraI	TTTAAA	1 cut(s)	217
FaiI	YATR	2 cut(s)	194, 204
Fnu4HI	GCNGC	1 cut(s)	86
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	86
GluI	GCNGC	1 cut(s)	86
HaeIII	GGCC	1 cut(s)	226
HgaI	GACGC	1 cut(s)	45
Hin1I	GRCGYC	1 cut(s)	56
HinfI	GANTC	1 cut(s)	136
HpyAV	CCTTC	1 cut(s)	215
HpyCH4IV	ACGT	1 cut(s)	183
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 94
HpyF3I	CTNAG	3 cut(s)	92, 131, 249
HpySE526I	ACGT	1 cut(s)	183
Hsp92I	GRCGYC	1 cut(s)	56
LmnI	GCTCC	3 cut(s)	13, 102, 148
LpnPI	CCDG	3 cut(s)	33, 165, 240
Lsp1109I	GCAGC	1 cut(s)	72
MaeII	ACGT	1 cut(s)	183
MluCI	AATT	1 cut(s)	212
MlyI	GAGTC	1 cut(s)	130
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	4 cut(s)	87, 110, 126, 131
MseI	TTAA	2 cut(s)	74, 216
MwoI	GCNNNNNNNGC	2 cut(s)	85, 94
NlaIV	GGNNCC	2 cut(s)	98, 150
PkrI	GCNGC	1 cut(s)	87
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
PspN4I	GGNNCC	2 cut(s)	98, 150
PspPI	GGNCC	1 cut(s)	224
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SaqAI	TTAA	2 cut(s)	74, 216
SatI	GCNGC	1 cut(s)	86
Sau96I	GGNCC	1 cut(s)	224
SchI	GAGTC	1 cut(s)	130
SetI	ASST	4 cut(s)	87, 132, 186, 202
SgeI	CNNG	7 cut(s)	26, 32, 139, 164, 173, 184, 239
Sse9I	AATT	1 cut(s)	212
SsiI	CCGC	1 cut(s)	60
TaiI	ACGT	1 cut(s)	186
TasI	AATT	1 cut(s)	212
Tru1I	TTAA	2 cut(s)	74, 216
Tru9I	TTAA	2 cut(s)	74, 216
TscAI	CASTG	1 cut(s)	96
TseI	GCWGC	1 cut(s)	85
TspRI	CASTG	1 cut(s)	96
XapI	RAATTY	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.