Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0005181

Physical Location & Seq

Genomic Coordinates Forward (+)

39726667 .. 39727821

Gene Structure 1155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G025960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGGTTTCTACCCATTTAAGTGGCTTTGTCCCTTGAATTTAAGTTTCTTCTCTTCCTCTTCAGCACCCTTCCCACTGCCTCATCTCCAATCCTCAGGTCCCTTCTCTCTCTCATCTTCATTTCTCATTTCCATTTTCTTCTTCTGTCTTATTAATTTTGATGTGTGTATGAATCAGTTGCAGGGCTTCAACTATGGAGGCTCACTAAGACCCAGATTCTCTTTCACCACTAAAGACACAGACAAAGGCATTCGCATTCAACCCATTAAAGCCAAAGCAGCAACCACCGAGGCCTCTCCGTTTCCTCTGCTTCAGTCTCCCCGAGCTAAAGACTCTCCCTCTGAGTTGGAGCCAGCAGATCCTGATTTCTACAAGATAGGGTTTGTTAGAAGTATGAGAGCTTATGGAATTGAATTTAAAGAAGGCCCAGATGGGTTTGGAGTTTATGCTTCCAAGGATGTTGAACCACTTCGCCGTGCTAGGGTGATAATGGAAATACCACTAGAACTGATGTTAACTATAAGCCAAAAGCTCCCATGGATGTTTTTCCCAGATATAGTACCGGTGGGTCACCCAATATTTGATATCATCAATTCAACAAGAAGAGAAGCTATGCTCAGCTTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

209

Amino Acids

23.62

Weight (kDa)

8.44

Isoelectric Point (pI)

63.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005181)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13130
malus_domestica	MD05G1244700.v1.1
pyrus_communis	pycom05g22120
rosa_chinensis	RchiOBHm_Chr1g0331441 RchiOBHm_Chr1g0378801 RchiOBHm_Chr2g0167351 RchiOBHm_Chr3g0456081 RchiOBHm_Chr3g0482001 RchiOBHm_Chr5g0063511
rosa_laevigata	RLG00000008600
rosa_multiflora	Rmu_sc0001208.1_g000033
rosa_roxburghii	Rroxscaffold_4G00300020
rosa_rugosa	Rorug02G0631000 Rorug05G0525600 Rorug05G0556200 Rorug06G0064800 Rorug06G0243200 Rorug07G0201200 Rorug07G0222900
rosa_samantha	Rh1BG283100 Rh1DG314900 Rh3AG245400 Rh3DG323100 Rh5BG155400 Rh5DG155900 Rh6BG246300 Rh7DG405100
rosa_wichuraiana	Rw2G025960 Rw4G010270 Rw5G028080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	353
AcsI	RAATTY	2 cut(s)	37, 413
AcuI	CTGAAG	2 cut(s)	45, 296
AfaI	GTAC	1 cut(s)	561
AfiI	CCNNNNNNNGG	1 cut(s)	481
AgeI	ACCGGT	1 cut(s)	562
AgsI	TTSAA	6 cut(s)	37, 190, 260, 413, 464, 597
AluBI	AGCT	5 cut(s)	326, 401, 532, 611, 621
AluI	AGCT	5 cut(s)	326, 401, 532, 611, 621
Alw26I	GTCTC	1 cut(s)	321
AlwI	GGATC	1 cut(s)	353
AlwNI	CAGNNNCTG	1 cut(s)	362
Ama87I	CYCGRG	1 cut(s)	321
AoxI	GGCC	2 cut(s)	291, 424
ApeKI	GCWGC	1 cut(s)	278
ApoI	RAATTY	2 cut(s)	37, 413
AseI	ATTAAT	1 cut(s)	153
AsiGI	ACCGGT	1 cut(s)	562
Asp700I	GAANNNNTTC	1 cut(s)	468
AspS9I	GGNCC	2 cut(s)	98, 425
AsuHPI	GGTGA	3 cut(s)	217, 496, 563
AvaI	CYCGRG	1 cut(s)	321
AvaII	GGWCC	1 cut(s)	98
AxyI	CCTNAGG	1 cut(s)	94
BbvI	GCAGC	1 cut(s)	290
BccI	CCATC	1 cut(s)	425
BceAI	ACGGC	1 cut(s)	459
BcoDI	GTCTC	1 cut(s)	321
BfaI	CTAG	2 cut(s)	480, 503
BisI	GCNGC	1 cut(s)	279
BlpI	GCTNAGC	1 cut(s)	617
BlsI	GCNGC	1 cut(s)	280
Bme18I	GGWCC	1 cut(s)	98
BmeT110I	CYCGRG	1 cut(s)	321
BmgT120I	GGNCC	2 cut(s)	98, 425
BmiI	GGNNCC	2 cut(s)	100, 351
Bpu1102I	GCTNAGC	1 cut(s)	617
BsaJI	CCNNGG	3 cut(s)	288, 453, 536
BsaWI	WCCGGW	1 cut(s)	562
Bsc4I	CCNNNNNNNGG	1 cut(s)	481
Bse118I	RCCGGY	1 cut(s)	562
Bse21I	CCTNAGG	1 cut(s)	94
BseDI	CCNNGG	3 cut(s)	288, 453, 536
BseGI	GGATG	2 cut(s)	463, 546
BseLI	CCNNNNNNNGG	1 cut(s)	481
BseMII	CTCAG	2 cut(s)	108, 333
BseXI	GCAGC	1 cut(s)	290
BshFI	GGCC	2 cut(s)	293, 426
BshTI	ACCGGT	1 cut(s)	562
BsiHKCI	CYCGRG	1 cut(s)	321
BsiSI	CCGG	1 cut(s)	563
BslFI	GGGAC	2 cut(s)	15, 84
BslI	CCNNNNNNNGG	1 cut(s)	481
BsmAI	GTCTC	1 cut(s)	321
BsmFI	GGGAC	2 cut(s)	15, 84
BsmI	GAATGC	2 cut(s)	249, 255
BsnI	GGCC	2 cut(s)	293, 426
BsoBI	CYCGRG	1 cut(s)	321
Bsp143I	GATC	1 cut(s)	358
Bsp1720I	GCTNAGC	1 cut(s)	617
Bsp19I	CCATGG	1 cut(s)	536
BspANI	GGCC	2 cut(s)	293, 426
BspCNI	CTCAG	3 cut(s)	107, 334, 630
BspLI	GGNNCC	2 cut(s)	100, 351
BspPI	GGATC	1 cut(s)	353
BsrFI	RCCGGY	1 cut(s)	562
BssAI	RCCGGY	1 cut(s)	562
BssECI	CCNNGG	3 cut(s)	288, 453, 536
BssMI	GATC	1 cut(s)	358
BssT1I	CCWWGG	2 cut(s)	453, 536
Bst6I	CTCTTC	3 cut(s)	58, 64, 598
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	4 cut(s)	94, 206, 342, 617
BstDSI	CCRYGG	1 cut(s)	536
BstEII	GGTNACC	1 cut(s)	569
BstF5I	GGATG	2 cut(s)	463, 546
BstKTI	GATC	1 cut(s)	361
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	1 cut(s)	358
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstPI	GGTNACC	1 cut(s)	569
BstV1I	GCAGC	1 cut(s)	290
BstX2I	RGATCY	1 cut(s)	358
BstXI	CCANNNNNNTGG	1 cut(s)	21
BstYI	RGATCY	1 cut(s)	358
Bsu36I	CCTNAGG	1 cut(s)	94
BsuRI	GGCC	2 cut(s)	293, 426
BtgI	CCRYGG	1 cut(s)	536
BtsCI	GGATG	2 cut(s)	463, 546
BtsI	GCAGTG	1 cut(s)	74
BtsIMutI	CAGTG	1 cut(s)	74
Cac8I	GCNNGC	1 cut(s)	354
CaiI	CAGNNNCTG	1 cut(s)	362
Cfr10I	RCCGGY	1 cut(s)	562
Cfr13I	GGNCC	2 cut(s)	98, 425
Csp6I	GTAC	1 cut(s)	560
CspAI	ACCGGT	1 cut(s)	562
CviAII	CATG	1 cut(s)	537
CviQI	GTAC	1 cut(s)	560
DdeI	CTNAG	4 cut(s)	94, 206, 342, 617
DpnI	GATC	1 cut(s)	360
DpnII	GATC	1 cut(s)	358
DraI	TTTAAA	1 cut(s)	418
Eam1104I	CTCTTC	3 cut(s)	58, 64, 598
EarI	CTCTTC	3 cut(s)	58, 64, 598
Eco130I	CCWWGG	2 cut(s)	453, 536
Eco147I	AGGCCT	1 cut(s)	293
Eco32I	GATATC	1 cut(s)	586
Eco47I	GGWCC	1 cut(s)	98
Eco57I	CTGAAG	2 cut(s)	45, 296
Eco81I	CCTNAGG	1 cut(s)	94
Eco88I	CYCGRG	1 cut(s)	321
Eco91I	GGTNACC	1 cut(s)	569
EcoO109I	RGGNCCY	1 cut(s)	98
EcoO65I	GGTNACC	1 cut(s)	569
EcoRV	GATATC	1 cut(s)	586
EcoT14I	CCWWGG	2 cut(s)	453, 536
ErhI	CCWWGG	2 cut(s)	453, 536
FaeI	CATG	1 cut(s)	540
FaiI	YATR	9 cut(s)	170, 195, 395, 405, 447, 521, 538, 557, 614
FaqI	GGGAC	2 cut(s)	15, 84
FatI	CATG	1 cut(s)	536
Fnu4HI	GCNGC	1 cut(s)	279
FokI	GGATG	2 cut(s)	470, 553
Fsp4HI	GCNGC	1 cut(s)	279
FspBI	CTAG	2 cut(s)	480, 503
GluI	GCNGC	1 cut(s)	279
HaeIII	GGCC	2 cut(s)	293, 426
HapII	CCGG	1 cut(s)	563
Hin1II	CATG	1 cut(s)	540
HincII	GTYRAC	1 cut(s)	516
HindII	GTYRAC	1 cut(s)	516
HinfI	GANTC	3 cut(s)	172, 216, 332
HpaI	GTTAAC	1 cut(s)	516
HpaII	CCGG	1 cut(s)	563
HphI	GGTGA	3 cut(s)	217, 496, 563
Hpy166II	GTNNAC	1 cut(s)	516
Hpy188I	TCNGA	1 cut(s)	343
Hpy188III	TCNNGA	1 cut(s)	362
Hpy8I	GTNNAC	1 cut(s)	516
HpyAV	CCTTC	3 cut(s)	79, 112, 416
HpyCH4V	TGCA	1 cut(s)	181
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	4 cut(s)	94, 206, 342, 617
Hsp92II	CATG	1 cut(s)	540
KspAI	GTTAAC	1 cut(s)	516
Kzo9I	GATC	1 cut(s)	358
LmnI	GCTCC	2 cut(s)	349, 537
LpnPI	CCDG	8 cut(s)	81, 167, 226, 366, 375, 441, 564, 576
Lsp1109I	GCAGC	1 cut(s)	290
MaeI	CTAG	2 cut(s)	480, 503
MaeIII	GTNAC	1 cut(s)	569
MalI	GATC	1 cut(s)	360
MboI	GATC	1 cut(s)	358
MboII	GAAGA	7 cut(s)	40, 45, 51, 108, 130, 133, 615
MflI	RGATCY	1 cut(s)	358
MluCI	AATT	5 cut(s)	37, 154, 408, 413, 592
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	8 cut(s)	67, 90, 103, 191, 283, 304, 315, 349
MroXI	GAANNNNTTC	1 cut(s)	468
MseI	TTAA	6 cut(s)	18, 41, 153, 267, 417, 515
MslI	CAYNNNNRTG	1 cut(s)	19
MspI	CCGG	1 cut(s)	563
Mva1269I	GAATGC	2 cut(s)	249, 255
MwoI	GCNNNNNNNGC	1 cut(s)	278
NcoI	CCATGG	1 cut(s)	536
NdeII	GATC	1 cut(s)	358
NlaIII	CATG	1 cut(s)	540
NlaIV	GGNNCC	2 cut(s)	100, 351
NmuCI	GTSAC	1 cut(s)	569
PceI	AGGCCT	1 cut(s)	293
PctI	GAATGC	2 cut(s)	249, 255
PdmI	GAANNNNTTC	1 cut(s)	468
PfeI	GAWTC	2 cut(s)	172, 216
PinAI	ACCGGT	1 cut(s)	562
PkrI	GCNGC	1 cut(s)	280
PleI	GAGTC	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	326
PpuMI	RGGWCCY	1 cut(s)	98
PshBI	ATTAAT	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	98
PspEI	GGTNACC	1 cut(s)	569
PspN4I	GGNNCC	2 cut(s)	100, 351
PspPI	GGNCC	2 cut(s)	98, 425
PspPPI	RGGWCCY	1 cut(s)	98
PstNI	CAGNNNCTG	1 cut(s)	362
PsuI	RGATCY	1 cut(s)	358
RsaI	GTAC	1 cut(s)	561
RsaNI	GTAC	1 cut(s)	560
RseI	CAYNNNNRTG	1 cut(s)	19
SaqAI	TTAA	6 cut(s)	18, 41, 153, 267, 417, 515
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	1 cut(s)	358
Sau96I	GGNCC	2 cut(s)	98, 425
SchI	GAGTC	1 cut(s)	326
SetI	ASST	6 cut(s)	100, 328, 403, 534, 613, 623
SinI	GGWCC	1 cut(s)	98
SmiMI	CAYNNNNRTG	1 cut(s)	19
Sse9I	AATT	5 cut(s)	37, 154, 408, 413, 592
SseBI	AGGCCT	1 cut(s)	293
SspI	AATATT	1 cut(s)	579
SspMI	CTAG	2 cut(s)	480, 503
StuI	AGGCCT	1 cut(s)	293
StyI	CCWWGG	2 cut(s)	453, 536
TasI	AATT	5 cut(s)	37, 154, 408, 413, 592
TfiI	GAWTC	2 cut(s)	172, 216
Tru1I	TTAA	6 cut(s)	18, 41, 153, 267, 417, 515
Tru9I	TTAA	6 cut(s)	18, 41, 153, 267, 417, 515
TscAI	CASTG	1 cut(s)	81
TseFI	GTSAC	1 cut(s)	569
TseI	GCWGC	1 cut(s)	278
Tsp45I	GTSAC	1 cut(s)	569
TspDTI	ATGAA	3 cut(s)	108, 185, 613
TspGWI	ACGGA	1 cut(s)	288
TspRI	CASTG	1 cut(s)	81
VpaK11BI	GGWCC	1 cut(s)	98
VspI	ATTAAT	1 cut(s)	153
XapI	RAATTY	2 cut(s)	37, 413
XmnI	GAANNNNTTC	1 cut(s)	468
XspI	CTAG	2 cut(s)	480, 503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.