Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0005181

Physical Location & Seq

Genomic Coordinates Reverse (-)

35187526 .. 35198111

Gene Structure 10586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG323100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGTTAATGTACCGCTCATATGATTCATTTCTAAATTACTATCCTGGCGTTGACTCGTTGGAGGAAGGCGAAGAAGATGGTGGCTACGGTGAACCCACTCCGGTGGTTGGAGATCGTGACGGAGGCAAGTTGGAGCCAGCAGATCCTGATTTCTACAAGATAGGGTTTGTTAGAAGTATGAGAGCTTATGGAATTGAATTTAAAGAAGGCCCAGATGGGTTTGGAGTTTATGCTTCCAAGGATGTTGAACCACTTCGCCGTGCTAGGGTGATAATGGAAATACCACTAGAACTGATGTTAACTATAAGCCAAAAGCTCCCATGGATGTTTTTCCCAGATATAGTACCGAATTCACAAATTAAAGGTGTGTTCCTTCTGGATGAAGTGTATATATGTTTGGTGTTGGTAAAATGTGTAAATCAATATGCAAAGTGGTCTTTTGGCATGAACCTTTGCAATGTTACTCGTCATGGTCTGGAGACCTCACATCAGTTTCCTGACTCTACCAGCAATATTGAGGTGGTCAGTTCTAGGAAATGGCCTTTGATTTCTCGTTACCGAGCTGCAGTTCGTACTCAATCACCAAAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

197

Amino Acids

22.42

Weight (kDa)

5.3

Isoelectric Point (pI)

46.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005181)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13130
malus_domestica	MD05G1244700.v1.1
pyrus_communis	pycom05g22120
rosa_chinensis	RchiOBHm_Chr1g0331441 RchiOBHm_Chr1g0378801 RchiOBHm_Chr2g0167351 RchiOBHm_Chr3g0456081 RchiOBHm_Chr3g0482001 RchiOBHm_Chr5g0063511
rosa_laevigata	RLG00000008600
rosa_multiflora	Rmu_sc0001208.1_g000033
rosa_roxburghii	Rroxscaffold_4G00300020
rosa_rugosa	Rorug02G0631000 Rorug05G0525600 Rorug05G0556200 Rorug06G0064800 Rorug06G0243200 Rorug07G0201200 Rorug07G0222900
rosa_samantha	Rh1BG283100 Rh1DG314900 Rh3AG245400 Rh3DG323100 Rh5BG155400 Rh5DG155900 Rh6BG246300 Rh7DG405100
rosa_wichuraiana	Rw2G025960 Rw4G010270 Rw5G028080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	15
AciI	CCGC	1 cut(s)	13
AclWI	GGATC	1 cut(s)	137
AcsI	RAATTY	2 cut(s)	197, 349
AfaI	GTAC	3 cut(s)	11, 345, 574
AfiI	CCNNNNNNNGG	2 cut(s)	107, 265
AgsI	TTSAA	2 cut(s)	197, 248
AjnI	CCWGG	1 cut(s)	43
AleI	CACNNNNGTG	1 cut(s)	101
AluBI	AGCT	3 cut(s)	185, 316, 563
AluI	AGCT	3 cut(s)	185, 316, 563
Alw26I	GTCTC	1 cut(s)	473
AlwI	GGATC	1 cut(s)	137
AlwNI	CAGNNNCTG	1 cut(s)	146
AoxI	GGCC	2 cut(s)	208, 539
ApeKI	GCWGC	1 cut(s)	563
ApoI	RAATTY	2 cut(s)	197, 349
Asp700I	GAANNNNTTC	1 cut(s)	252
AspS9I	GGNCC	1 cut(s)	209
AsuHPI	GGTGA	3 cut(s)	101, 280, 573
BbvI	GCAGC	1 cut(s)	550
BccI	CCATC	2 cut(s)	71, 209
BceAI	ACGGC	1 cut(s)	243
BciT130I	CCWGG	1 cut(s)	45
BcoDI	GTCTC	1 cut(s)	473
BfaI	CTAG	3 cut(s)	264, 287, 531
BfmI	CTRYAG	1 cut(s)	564
BisI	GCNGC	1 cut(s)	564
BlsI	GCNGC	1 cut(s)	565
Bme1390I	CCNGG	1 cut(s)	45
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	1 cut(s)	135
BmrFI	CCNGG	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	497
BsaI	GGTCTC	1 cut(s)	473
BsaJI	CCNNGG	2 cut(s)	237, 320
BsaWI	WCCGGW	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 265
Bse3DI	GCAATG	1 cut(s)	463
BseBI	CCWGG	1 cut(s)	45
BseDI	CCNNGG	2 cut(s)	237, 320
BseGI	GGATG	3 cut(s)	247, 330, 385
BseLI	CCNNNNNNNGG	2 cut(s)	107, 265
BseMI	GCAATG	1 cut(s)	463
BseXI	GCAGC	1 cut(s)	550
BshFI	GGCC	2 cut(s)	210, 541
BsiSI	CCGG	1 cut(s)	101
BslI	CCNNNNNNNGG	2 cut(s)	107, 265
BsmAI	GTCTC	1 cut(s)	473
BsnI	GGCC	2 cut(s)	210, 541
Bso31I	GGTCTC	1 cut(s)	473
Bsp143I	GATC	2 cut(s)	112, 142
Bsp19I	CCATGG	1 cut(s)	320
BspACI	CCGC	1 cut(s)	13
BspANI	GGCC	2 cut(s)	210, 541
BspLI	GGNNCC	1 cut(s)	135
BspMAI	CTGCAG	1 cut(s)	568
BspPI	GGATC	1 cut(s)	137
BspTNI	GGTCTC	1 cut(s)	473
BsrBI	CCGCTC	1 cut(s)	15
BsrDI	GCAATG	1 cut(s)	463
BssECI	CCNNGG	2 cut(s)	237, 320
BssMI	GATC	2 cut(s)	112, 142
BssT1I	CCWWGG	2 cut(s)	237, 320
Bst2UI	CCWGG	1 cut(s)	45
Bst4CI	ACNGT	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	138
BstDSI	CCRYGG	1 cut(s)	320
BstF5I	GGATG	3 cut(s)	247, 330, 385
BstKTI	GATC	2 cut(s)	115, 145
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	2 cut(s)	112, 142
BstNI	CCWGG	1 cut(s)	45
BstSCI	CCNGG	1 cut(s)	43
BstSFI	CTRYAG	1 cut(s)	564
BstV1I	GCAGC	1 cut(s)	550
BstX2I	RGATCY	1 cut(s)	142
BstXI	CCANNNNNNTGG	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	142
BsuRI	GGCC	2 cut(s)	210, 541
BtgI	CCRYGG	1 cut(s)	320
BtsCI	GGATG	3 cut(s)	247, 330, 385
Cac8I	GCNNGC	1 cut(s)	138
CaiI	CAGNNNCTG	1 cut(s)	146
Cfr13I	GGNCC	1 cut(s)	209
Csp6I	GTAC	3 cut(s)	10, 344, 573
CviAII	CATG	3 cut(s)	321, 445, 470
CviJI	RGCY	8 cut(s)	84, 136, 185, 210, 309, 316, 541, 563
CviKI_1	RGCY	8 cut(s)	84, 136, 185, 210, 309, 316, 541, 563
CviQI	GTAC	3 cut(s)	10, 344, 573
DpnI	GATC	2 cut(s)	114, 144
DpnII	GATC	2 cut(s)	112, 142
DraI	TTTAAA	1 cut(s)	202
Eco130I	CCWWGG	2 cut(s)	237, 320
Eco31I	GGTCTC	1 cut(s)	473
EcoRI	GAATTC	1 cut(s)	349
EcoRII	CCWGG	1 cut(s)	43
EcoT14I	CCWWGG	2 cut(s)	237, 320
ErhI	CCWWGG	2 cut(s)	237, 320
FaeI	CATG	3 cut(s)	324, 448, 473
FatI	CATG	3 cut(s)	320, 444, 469
FauNDI	CATATG	1 cut(s)	19
Fnu4HI	GCNGC	1 cut(s)	564
FokI	GGATG	3 cut(s)	254, 337, 392
Fsp4HI	GCNGC	1 cut(s)	564
FspBI	CTAG	3 cut(s)	264, 287, 531
GluI	GCNGC	1 cut(s)	564
GsuI	CTGGAG	1 cut(s)	497
HaeIII	GGCC	2 cut(s)	210, 541
HapII	CCGG	1 cut(s)	101
Hin1II	CATG	3 cut(s)	324, 448, 473
HincII	GTYRAC	2 cut(s)	52, 300
HindII	GTYRAC	2 cut(s)	52, 300
HinfI	GANTC	3 cut(s)	23, 53, 500
HpaI	GTTAAC	1 cut(s)	300
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	3 cut(s)	101, 280, 573
Hpy166II	GTNNAC	3 cut(s)	52, 92, 300
Hpy188III	TCNNGA	5 cut(s)	116, 146, 377, 476, 497
Hpy8I	GTNNAC	3 cut(s)	52, 92, 300
HpyAV	CCTTC	3 cut(s)	59, 200, 383
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4V	TGCA	3 cut(s)	428, 456, 566
Hsp92II	CATG	3 cut(s)	324, 448, 473
KspAI	GTTAAC	1 cut(s)	300
Kzo9I	GATC	2 cut(s)	112, 142
LmnI	GCTCC	2 cut(s)	133, 321
Lsp1109I	GCAGC	1 cut(s)	550
MaeI	CTAG	3 cut(s)	264, 287, 531
MaeIII	GTNAC	3 cut(s)	116, 460, 554
MalI	GATC	2 cut(s)	114, 144
MbiI	CCGCTC	1 cut(s)	15
MboI	GATC	2 cut(s)	112, 142
MboII	GAAGA	2 cut(s)	83, 86
MflI	RGATCY	1 cut(s)	142
MluCI	AATT	5 cut(s)	34, 192, 197, 349, 357
MlyI	GAGTC	2 cut(s)	47, 494
MmeI	TCCRAC	3 cut(s)	39, 88, 111
MnlI	CCTC	4 cut(s)	55, 116, 493, 511
MroXI	GAANNNNTTC	1 cut(s)	252
MseI	TTAA	4 cut(s)	5, 201, 299, 360
MslI	CAYNNNNRTG	1 cut(s)	101
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	45
MvaI	CCWGG	1 cut(s)	45
NcoI	CCATGG	1 cut(s)	320
NdeI	CATATG	1 cut(s)	19
NdeII	GATC	2 cut(s)	112, 142
NlaIII	CATG	3 cut(s)	324, 448, 473
NlaIV	GGNNCC	1 cut(s)	135
NmuCI	GTSAC	1 cut(s)	116
OliI	CACNNNNGTG	1 cut(s)	101
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	565
PleI	GAGTC	2 cut(s)	47, 494
PpsI	GAGTC	2 cut(s)	47, 494
Psp6I	CCWGG	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	43
PspN4I	GGNNCC	1 cut(s)	135
PspPI	GGNCC	1 cut(s)	209
PstI	CTGCAG	1 cut(s)	568
PstNI	CAGNNNCTG	1 cut(s)	146
PsuI	RGATCY	1 cut(s)	142
RsaI	GTAC	3 cut(s)	11, 345, 574
RsaNI	GTAC	3 cut(s)	10, 344, 573
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	4 cut(s)	5, 201, 299, 360
SatI	GCNGC	1 cut(s)	564
Sau3AI	GATC	2 cut(s)	112, 142
Sau96I	GGNCC	1 cut(s)	209
SchI	GAGTC	2 cut(s)	47, 494
ScrFI	CCNGG	1 cut(s)	45
SetI	ASST	7 cut(s)	187, 318, 367, 453, 485, 522, 565
SfcI	CTRYAG	1 cut(s)	564
SmiMI	CAYNNNNRTG	1 cut(s)	101
Sse9I	AATT	5 cut(s)	34, 192, 197, 349, 357
SsiI	CCGC	1 cut(s)	13
SspI	AATATT	1 cut(s)	514
SspMI	CTAG	3 cut(s)	264, 287, 531
StyD4I	CCNGG	1 cut(s)	43
StyI	CCWWGG	2 cut(s)	237, 320
TaaI	ACNGT	1 cut(s)	89
TasI	AATT	5 cut(s)	34, 192, 197, 349, 357
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	4 cut(s)	5, 201, 299, 360
Tru9I	TTAA	4 cut(s)	5, 201, 299, 360
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	1 cut(s)	563
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	3 cut(s)	15, 396, 461
TspGWI	ACGGA	1 cut(s)	135
XapI	RAATTY	2 cut(s)	197, 349
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	3 cut(s)	264, 287, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.