Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0005181

Physical Location & Seq

Genomic Coordinates Reverse (-)

26141239 .. 26152784

Gene Structure 11546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG245400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGATTCTGTCACAACCTTCTCGCACCCACTCATGAACTTGGCAGATGACACTCACGTCACAGCCTTCTCGCGCCCACTTGTGAACTTGGCAAATGACAGCTGTCCCACAACCTTCTTCCGCCCATTGGTGAACTTGGCCAGAGACAACAAACGAGCTGCTCGCGTGCTTCAACTTCTGCATCAGCCATCTAGAATGGACATAGCAATGACTTACAAGGGTATGGAGACCGAAGGGTTGAACACTGATAAATATGATGGGCTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

89

Amino Acids

10.04

Weight (kDa)

6.38

Isoelectric Point (pI)

42.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005181)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13130
malus_domestica	MD05G1244700.v1.1
pyrus_communis	pycom05g22120
rosa_chinensis	RchiOBHm_Chr1g0331441 RchiOBHm_Chr1g0378801 RchiOBHm_Chr2g0167351 RchiOBHm_Chr3g0456081 RchiOBHm_Chr3g0482001 RchiOBHm_Chr5g0063511
rosa_laevigata	RLG00000008600
rosa_multiflora	Rmu_sc0001208.1_g000033
rosa_roxburghii	Rroxscaffold_4G00300020
rosa_rugosa	Rorug02G0631000 Rorug05G0525600 Rorug05G0556200 Rorug06G0064800 Rorug06G0243200 Rorug07G0201200 Rorug07G0222900
rosa_samantha	Rh1BG283100 Rh1DG314900 Rh3AG245400 Rh3DG323100 Rh5BG155400 Rh5DG155900 Rh6BG246300 Rh7DG405100
rosa_wichuraiana	Rw2G025960 Rw4G010270 Rw5G028080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	56
AccII	CGCG	2 cut(s)	73, 165
AciI	CCGC	1 cut(s)	121
AcoI	YGGCCR	1 cut(s)	138
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	2 cut(s)	173, 241
AjiI	CACGTC	1 cut(s)	58
AluBI	AGCT	2 cut(s)	102, 158
AluI	AGCT	2 cut(s)	102, 158
Alw26I	GTCTC	2 cut(s)	138, 221
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	75
AsuHPI	GGTGA	1 cut(s)	142
BalI	TGGCCA	1 cut(s)	140
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	2 cut(s)	196, 251
BcoDI	GTCTC	2 cut(s)	138, 221
BfaI	CTAG	1 cut(s)	192
BisI	GCNGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	160
BmgBI	CACGTC	1 cut(s)	58
BmsI	GCATC	1 cut(s)	190
BoxI	GACNNNNGTC	1 cut(s)	102
BsaI	GGTCTC	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse3DI	GCAATG	1 cut(s)	213
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMI	GCAATG	1 cut(s)	213
BseXI	GCAGC	1 cut(s)	145
Bsh1236I	CGCG	2 cut(s)	73, 165
BshFI	GGCC	1 cut(s)	140
BslFI	GGGAC	1 cut(s)	90
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	2 cut(s)	138, 221
BsmFI	GGGAC	1 cut(s)	90
BsnI	GGCC	1 cut(s)	140
Bso31I	GGTCTC	1 cut(s)	221
BspACI	CCGC	1 cut(s)	121
BspANI	GGCC	1 cut(s)	140
BspFNI	CGCG	2 cut(s)	73, 165
BspHI	TCATGA	1 cut(s)	33
BspTNI	GGTCTC	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	213
BstC8I	GCNNGC	2 cut(s)	163, 167
BstFNI	CGCG	2 cut(s)	73, 165
BstHHI	GCGC	1 cut(s)	75
BstMAI	GTCTC	2 cut(s)	138, 221
BstPAI	GACNNNNGTC	1 cut(s)	102
BstUI	CGCG	2 cut(s)	73, 165
BstV1I	GCAGC	1 cut(s)	145
BsuRI	GGCC	1 cut(s)	140
BtrI	CACGTC	1 cut(s)	58
BtsIMutI	CAGTG	1 cut(s)	243
Cac8I	GCNNGC	2 cut(s)	163, 167
CciI	TCATGA	1 cut(s)	33
CfoI	GCGC	1 cut(s)	75
CviAII	CATG	1 cut(s)	34
CviJI	RGCY	6 cut(s)	65, 102, 140, 158, 187, 262
CviKI_1	RGCY	6 cut(s)	65, 102, 140, 158, 187, 262
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
EaeI	YGGCCR	1 cut(s)	138
EciI	GGCGGA	1 cut(s)	110
Eco31I	GGTCTC	1 cut(s)	221
FaeI	CATG	1 cut(s)	37
FaiI	YATR	4 cut(s)	35, 203, 224, 255
FaqI	GGGAC	1 cut(s)	90
FatI	CATG	1 cut(s)	33
Fnu4HI	GCNGC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	159
FspBI	CTAG	1 cut(s)	192
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	140
HhaI	GCGC	1 cut(s)	75
Hin1II	CATG	1 cut(s)	37
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HinfI	GANTC	1 cut(s)	5
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	2 cut(s)	85, 133
Hpy188III	TCNNGA	2 cut(s)	34, 192
Hpy8I	GTNNAC	2 cut(s)	85, 133
HpyAV	CCTTC	4 cut(s)	28, 76, 124, 227
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	1 cut(s)	181
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	37
HspAI	GCGC	1 cut(s)	73
LpnPI	CCDG	1 cut(s)	154
Lsp1109I	GCAGC	1 cut(s)	145
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	1 cut(s)	192
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	2 cut(s)	10, 58
MboII	GAAGA	1 cut(s)	109
MlsI	TGGCCA	1 cut(s)	140
MluNI	TGGCCA	1 cut(s)	140
Mox20I	TGGCCA	1 cut(s)	140
MscI	TGGCCA	1 cut(s)	140
MslI	CAYNNNNRTG	1 cut(s)	206
Msp20I	TGGCCA	1 cut(s)	140
MspA1I	CMGCKG	1 cut(s)	102
MvnI	CGCG	2 cut(s)	73, 165
NlaIII	CATG	1 cut(s)	37
NmuCI	GTSAC	2 cut(s)	10, 58
PagI	TCATGA	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	1 cut(s)	160
PshAI	GACNNNNGTC	1 cut(s)	102
PvuII	CAGCTG	1 cut(s)	102
RseI	CAYNNNNRTG	1 cut(s)	206
SatI	GCNGC	1 cut(s)	159
SetI	ASST	5 cut(s)	20, 60, 104, 116, 160
SfaNI	GCATC	1 cut(s)	190
SmiMI	CAYNNNNRTG	1 cut(s)	206
SsiI	CCGC	1 cut(s)	121
SspMI	CTAG	1 cut(s)	192
TaiI	ACGT	1 cut(s)	60
TaqII	GACCGA	1 cut(s)	245
TfiI	GAWTC	1 cut(s)	5
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	2 cut(s)	10, 58
TseI	GCWGC	1 cut(s)	158
Tsp45I	GTSAC	2 cut(s)	10, 58
TspDTI	ATGAA	2 cut(s)	50, 254
TspRI	CASTG	1 cut(s)	250
XbaI	TCTAGA	1 cut(s)	191
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.