Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005181

Physical Location & Seq

Genomic Coordinates Forward (+)

69227308 .. 69232509

Gene Structure 5202 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33961

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAGAGCTTATGGAATTGAATTTAAAGAAGGCCCAGATGGGTTTGGAGTTTATGCTTCCAAGGATGTTGAACCACTTTGCCGTGCTAGGGTGATAATGGAAATACCACTAGAACTGATGTTAACTATAAGCCAAAAGCTCCCATGGATGTTTTTCCCAGATATAGTACCGGTGGGTCACCCAATATTTGATATCATCAATTCAACTGATCCAGAGACAGGTTGGGATCTAAGGTTAGCTTGCCTTCTTTTGTATGCATTTGATTGGGAGGATAACTTTTGGCAGTTGTATAGTGATTTTTTACCCAGTGCAGATGAGTGCCCCAGTCTGCTTTTAGCTAGCGAGGTTTTATGGCTTCGCCATCTACTTGGCTTCTGGATTGACTTGTACACTCCTGTCGATGCTTGTTTTCTTCCATCCAATCAAGTTTGCAATACATTTACACTTGCGAATCTGCTTTCACTTGGCAGTTCTTCGGCGGCTCGGCCCTTGAGGCTTGATCGGTTGCTGCCTTGCTGGGTTATTCACTCCAGTCACTCCACCGAATCTAGGATGTTAAAGAGGAATTGTGTGAATCAGAGGGCCACAAATGAAAGCTTGAAGAGAATAAAGTTTGTAATTGTCTCTTTGACTGGATGGGGTGCACTTATCTTTAGTGGATACAAGTTTTTCACCGGAGGCAAAGGCAAGAAGGAAGAGGGCTTTCAGAGGGTAAACAAAAGGATGTACTTAAAGCTGCTGGTGCATTGTTTTCATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

253

Amino Acids

29.0

Weight (kDa)

6.99

Isoelectric Point (pI)

42.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005181)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13130
malus_domestica	MD05G1244700.v1.1
pyrus_communis	pycom05g22120
rosa_chinensis	RchiOBHm_Chr1g0331441 RchiOBHm_Chr1g0378801 RchiOBHm_Chr2g0167351 RchiOBHm_Chr3g0456081 RchiOBHm_Chr3g0482001 RchiOBHm_Chr5g0063511
rosa_laevigata	RLG00000008600
rosa_multiflora	Rmu_sc0001208.1_g000033
rosa_roxburghii	Rroxscaffold_4G00300020
rosa_rugosa	Rorug02G0631000 Rorug05G0525600 Rorug05G0556200 Rorug06G0064800 Rorug06G0243200 Rorug07G0201200 Rorug07G0222900
rosa_samantha	Rh1BG283100 Rh1DG314900 Rh3AG245400 Rh3DG323100 Rh5BG155400 Rh5DG155900 Rh6BG246300 Rh7DG405100
rosa_wichuraiana	Rw2G025960 Rw4G010270 Rw5G028080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	479
AclWI	GGATC	2 cut(s)	203, 234
AcsI	RAATTY	1 cut(s)	20
AfaI	GTAC	3 cut(s)	168, 389, 728
AfiI	CCNNNNNNNGG	3 cut(s)	88, 218, 549
AgeI	ACCGGT	1 cut(s)	169
AgsI	TTSAA	4 cut(s)	20, 71, 204, 601
AluBI	AGCT	6 cut(s)	8, 139, 239, 338, 597, 736
AluI	AGCT	6 cut(s)	8, 139, 239, 338, 597, 736
Alw21I	GWGCWC	1 cut(s)	646
Alw26I	GTCTC	2 cut(s)	209, 628
Alw44I	GTGCAC	1 cut(s)	642
AlwI	GGATC	2 cut(s)	203, 234
AoxI	GGCC	3 cut(s)	31, 485, 582
ApaLI	GTGCAC	1 cut(s)	642
ApeKI	GCWGC	2 cut(s)	508, 736
ApoI	RAATTY	1 cut(s)	20
AsiGI	ACCGGT	1 cut(s)	169
AspS9I	GGNCC	3 cut(s)	32, 486, 582
AsuHPI	GGTGA	3 cut(s)	103, 170, 664
AsuNHI	GCTAGC	1 cut(s)	338
BaeGI	GKGCMC	2 cut(s)	323, 646
Bbv12I	GWGCWC	1 cut(s)	646
BbvI	GCAGC	2 cut(s)	495, 723
BccI	CCATC	4 cut(s)	32, 369, 424, 630
BceAI	ACGGC	1 cut(s)	66
BciVI	GTATCC	1 cut(s)	653
BcoDI	GTCTC	2 cut(s)	209, 628
BfaI	CTAG	4 cut(s)	87, 110, 339, 549
BfuI	GTATCC	1 cut(s)	653
BglI	GCCNNNNNGGC	1 cut(s)	493
BisI	GCNGC	3 cut(s)	480, 509, 737
BlsI	GCNGC	3 cut(s)	481, 510, 738
BmgT120I	GGNCC	3 cut(s)	32, 486, 582
BmrI	ACTGGG	2 cut(s)	300, 318
BmsI	GCATC	1 cut(s)	391
BmtI	GCTAGC	1 cut(s)	342
BmuI	ACTGGG	2 cut(s)	300, 318
BpmI	CTGGAG	1 cut(s)	514
BpuEI	CTTGAG	1 cut(s)	511
BsaJI	CCNNGG	2 cut(s)	60, 143
BsaWI	WCCGGW	2 cut(s)	169, 674
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 218, 549
Bse118I	RCCGGY	1 cut(s)	169
Bse1I	ACTGG	4 cut(s)	306, 324, 531, 637
BseDI	CCNNGG	2 cut(s)	60, 143
BseGI	GGATG	6 cut(s)	70, 153, 416, 558, 641, 729
BseLI	CCNNNNNNNGG	3 cut(s)	88, 218, 549
BseNI	ACTGG	4 cut(s)	306, 324, 531, 637
BseSI	GKGCMC	2 cut(s)	323, 646
BseXI	GCAGC	2 cut(s)	495, 723
BseYI	CCCAGC	1 cut(s)	516
BsgI	GTGCAG	1 cut(s)	330
BshFI	GGCC	3 cut(s)	33, 487, 584
BshTI	ACCGGT	1 cut(s)	169
BsiHKAI	GWGCWC	1 cut(s)	646
BsiSI	CCGG	2 cut(s)	170, 675
BslI	CCNNNNNNNGG	3 cut(s)	88, 218, 549
BsmAI	GTCTC	2 cut(s)	209, 628
BsnI	GGCC	3 cut(s)	33, 487, 584
Bsp1286I	GDGCHC	2 cut(s)	323, 646
Bsp1407I	TGTACA	1 cut(s)	387
Bsp143I	GATC	3 cut(s)	208, 226, 499
Bsp19I	CCATGG	1 cut(s)	143
BspACI	CCGC	1 cut(s)	479
BspANI	GGCC	3 cut(s)	33, 487, 584
BspOI	GCTAGC	1 cut(s)	342
BspPI	GGATC	2 cut(s)	203, 234
BsrFI	RCCGGY	1 cut(s)	169
BsrGI	TGTACA	1 cut(s)	387
BsrI	ACTGG	4 cut(s)	306, 324, 531, 637
BssAI	RCCGGY	1 cut(s)	169
BssECI	CCNNGG	2 cut(s)	60, 143
BssMI	GATC	3 cut(s)	208, 226, 499
BssT1I	CCWWGG	2 cut(s)	60, 143
Bst6I	CTCTTC	2 cut(s)	596, 690
BstAUI	TGTACA	1 cut(s)	387
BstC8I	GCNNGC	2 cut(s)	241, 340
BstDEI	CTNAG	1 cut(s)	230
BstDSI	CCRYGG	1 cut(s)	143
BstEII	GGTNACC	1 cut(s)	176
BstF5I	GGATG	6 cut(s)	70, 153, 416, 558, 641, 729
BstKTI	GATC	3 cut(s)	211, 229, 502
BstMAI	GTCTC	2 cut(s)	209, 628
BstMBI	GATC	3 cut(s)	208, 226, 499
BstMWI	GCNNNNNNNGC	2 cut(s)	493, 742
BstPI	GGTNACC	1 cut(s)	176
BstSLI	GKGCMC	2 cut(s)	323, 646
BstV1I	GCAGC	2 cut(s)	495, 723
BstX2I	RGATCY	1 cut(s)	226
BstXI	CCANNNNNNTGG	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	226
BsuI	GTATCC	1 cut(s)	653
BsuRI	GGCC	3 cut(s)	33, 487, 584
BtgI	CCRYGG	1 cut(s)	143
BtsCI	GGATG	6 cut(s)	70, 153, 416, 558, 641, 729
BtsIMutI	CAGTG	1 cut(s)	313
Cac8I	GCNNGC	2 cut(s)	241, 340
Cfr10I	RCCGGY	1 cut(s)	169
Cfr13I	GGNCC	3 cut(s)	32, 486, 582
Csp6I	GTAC	3 cut(s)	167, 388, 727
CspAI	ACCGGT	1 cut(s)	169
CviAII	CATG	1 cut(s)	144
CviQI	GTAC	3 cut(s)	167, 388, 727
DdeI	CTNAG	1 cut(s)	230
DpnI	GATC	3 cut(s)	210, 228, 501
DpnII	GATC	3 cut(s)	208, 226, 499
DraI	TTTAAA	1 cut(s)	25
Eam1104I	CTCTTC	2 cut(s)	596, 690
EarI	CTCTTC	2 cut(s)	596, 690
Eco130I	CCWWGG	2 cut(s)	60, 143
Eco32I	GATATC	1 cut(s)	193
Eco91I	GGTNACC	1 cut(s)	176
EcoO65I	GGTNACC	1 cut(s)	176
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	2 cut(s)	60, 143
EcoT22I	ATGCAT	1 cut(s)	259
ErhI	CCWWGG	2 cut(s)	60, 143
FaeI	CATG	1 cut(s)	147
FaiI	YATR	8 cut(s)	12, 54, 128, 145, 164, 255, 291, 352
FalI	AAGNNNNNCTT	2 cut(s)	223, 255
FatI	CATG	1 cut(s)	143
Fnu4HI	GCNGC	3 cut(s)	480, 509, 737
FokI	GGATG	6 cut(s)	77, 160, 403, 565, 648, 736
Fsp4HI	GCNGC	3 cut(s)	480, 509, 737
FspBI	CTAG	4 cut(s)	87, 110, 339, 549
GluI	GCNGC	3 cut(s)	480, 509, 737
GsaI	CCCAGC	1 cut(s)	520
GsuI	CTGGAG	1 cut(s)	514
HaeIII	GGCC	3 cut(s)	33, 487, 584
HapII	CCGG	2 cut(s)	170, 675
Hin1II	CATG	1 cut(s)	147
HincII	GTYRAC	1 cut(s)	123
HindII	GTYRAC	1 cut(s)	123
HindIII	AAGCTT	1 cut(s)	595
HinfI	GANTC	3 cut(s)	451, 545, 574
HpaI	GTTAAC	1 cut(s)	123
HpaII	CCGG	2 cut(s)	170, 675
HphI	GGTGA	3 cut(s)	103, 170, 664
Hpy166II	GTNNAC	4 cut(s)	123, 390, 644, 715
Hpy188I	TCNGA	2 cut(s)	579, 708
Hpy188III	TCNNGA	2 cut(s)	212, 376
Hpy8I	GTNNAC	4 cut(s)	123, 390, 644, 715
HpyAV	CCTTC	3 cut(s)	23, 254, 685
HpyCH4V	TGCA	5 cut(s)	257, 311, 432, 644, 745
HpyF10VI	GCNNNNNNNGC	2 cut(s)	493, 742
HpyF3I	CTNAG	1 cut(s)	230
Hsp92II	CATG	1 cut(s)	147
KspAI	GTTAAC	1 cut(s)	123
Kzo9I	GATC	3 cut(s)	208, 226, 499
LmnI	GCTCC	1 cut(s)	144
Lsp1109I	GCAGC	2 cut(s)	495, 723
LweI	GCATC	1 cut(s)	391
MaeI	CTAG	4 cut(s)	87, 110, 339, 549
MaeIII	GTNAC	2 cut(s)	176, 533
MalI	GATC	3 cut(s)	210, 228, 501
MboI	GATC	3 cut(s)	208, 226, 499
MboII	GAAGA	4 cut(s)	404, 465, 613, 707
MflI	RGATCY	1 cut(s)	226
MhlI	GDGCHC	2 cut(s)	323, 646
MluCI	AATT	5 cut(s)	15, 20, 199, 565, 618
MnlI	CCTC	8 cut(s)	262, 337, 486, 555, 573, 671, 691, 702
Mph1103I	ATGCAT	1 cut(s)	259
MseI	TTAA	4 cut(s)	24, 122, 557, 731
MspI	CCGG	2 cut(s)	170, 675
MwoI	GCNNNNNNNGC	2 cut(s)	493, 742
NcoI	CCATGG	1 cut(s)	143
NdeII	GATC	3 cut(s)	208, 226, 499
NheI	GCTAGC	1 cut(s)	338
NlaIII	CATG	1 cut(s)	147
NmeAIII	GCCGAG	1 cut(s)	463
NmuCI	GTSAC	2 cut(s)	176, 533
NsiI	ATGCAT	1 cut(s)	259
PfeI	GAWTC	3 cut(s)	451, 545, 574
PinAI	ACCGGT	1 cut(s)	169
PkrI	GCNGC	3 cut(s)	481, 510, 738
PspEI	GGTNACC	1 cut(s)	176
PspFI	CCCAGC	1 cut(s)	516
PspPI	GGNCC	3 cut(s)	32, 486, 582
PsuI	RGATCY	1 cut(s)	226
RsaI	GTAC	3 cut(s)	168, 389, 728
RsaNI	GTAC	3 cut(s)	167, 388, 727
SaqAI	TTAA	4 cut(s)	24, 122, 557, 731
SatI	GCNGC	3 cut(s)	480, 509, 737
Sau3AI	GATC	3 cut(s)	208, 226, 499
Sau96I	GGNCC	3 cut(s)	32, 486, 582
SduI	GDGCHC	2 cut(s)	323, 646
SetI	ASST	9 cut(s)	10, 141, 223, 236, 241, 340, 348, 599, 738
SfaNI	GCATC	1 cut(s)	391
SmlI	CTYRAG	1 cut(s)	490
SmoI	CTYRAG	1 cut(s)	490
Sse9I	AATT	5 cut(s)	15, 20, 199, 565, 618
SsiI	CCGC	1 cut(s)	479
SspI	AATATT	1 cut(s)	186
SspMI	CTAG	4 cut(s)	87, 110, 339, 549
StyI	CCWWGG	2 cut(s)	60, 143
TaqI	TCGA	1 cut(s)	399
TasI	AATT	5 cut(s)	15, 20, 199, 565, 618
TatI	WGTACW	2 cut(s)	387, 726
TauI	GCSGC	1 cut(s)	482
TfiI	GAWTC	3 cut(s)	451, 545, 574
Tru1I	TTAA	4 cut(s)	24, 122, 557, 731
Tru9I	TTAA	4 cut(s)	24, 122, 557, 731
TscAI	CASTG	1 cut(s)	313
TseFI	GTSAC	2 cut(s)	176, 533
TseI	GCWGC	2 cut(s)	508, 736
Tsp45I	GTSAC	2 cut(s)	176, 533
TspDTI	ATGAA	2 cut(s)	606, 743
TspRI	CASTG	1 cut(s)	313
VneI	GTGCAC	1 cut(s)	642
XapI	RAATTY	1 cut(s)	20
XcmI	CCANNNNNNNNNTGG	1 cut(s)	219
XspI	CTAG	4 cut(s)	87, 110, 339, 549
Zsp2I	ATGCAT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.