RchiOBHm_Chr1g0331441

Ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
21300478 .. 21302364
1887 bp
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UTR
Exon/CDS
Intron
PRQ56046

Sequence Viewer

Length: 195 bp
ATGAATTTTGCAGGCAATGGAAGTCTCGCTTTATATATAAAGATTAAAGCCAAAGCAGCCGCCGAGACCTCTCCATTTCCATTGCTTCAGTCTCCCCAAGCTAAAGACTCCCCCTCTGAGATGGACGTAGCAATGACTTACAAGGGTATGGAGACCGAAGGGTTGAACACTGATAAATATGATGGGCTTCATTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

64

Amino Acids

6.89

Weight (kDa)

5.08

Isoelectric Point (pI)

52.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 60
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 1 cut(s) 71
AgsI TTSAA 1 cut(s) 166
AluBI AGCT 1 cut(s) 101
AluI AGCT 1 cut(s) 101
Alw26I GTCTC 4 cut(s) 29, 59, 96, 146
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 1 cut(s) 4
BbvI GCAGC 1 cut(s) 68
BccI CCATC 2 cut(s) 115, 176
BcoDI GTCTC 4 cut(s) 29, 59, 96, 146
BisI GCNGC 2 cut(s) 57, 60
BlsI GCNGC 2 cut(s) 58, 61
BsaI GGTCTC 2 cut(s) 59, 146
Bse3DI GCAATG 3 cut(s) 22, 80, 138
BseMI GCAATG 3 cut(s) 22, 80, 138
BseMII CTCAG 1 cut(s) 108
BseXI GCAGC 1 cut(s) 68
BsmAI GTCTC 4 cut(s) 29, 59, 96, 146
Bso31I GGTCTC 2 cut(s) 59, 146
BspACI CCGC 1 cut(s) 60
BspCNI CTCAG 1 cut(s) 109
BspTNI GGTCTC 2 cut(s) 59, 146
BsrDI GCAATG 3 cut(s) 22, 80, 138
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 1 cut(s) 117
BstMAI GTCTC 4 cut(s) 29, 59, 96, 146
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstV1I GCAGC 1 cut(s) 68
BtsIMutI CAGTG 1 cut(s) 168
Cac8I GCNNGC 1 cut(s) 13
CviJI RGCY 4 cut(s) 50, 59, 101, 187
CviKI_1 RGCY 4 cut(s) 50, 59, 101, 187
DdeI CTNAG 1 cut(s) 117
Eco31I GGTCTC 2 cut(s) 59, 146
Eco57I CTGAAG 1 cut(s) 71
FaiI YATR 5 cut(s) 34, 36, 38, 149, 180
FalI AAGNNNNNCTT 2 cut(s) 13, 45
Fnu4HI GCNGC 2 cut(s) 57, 60
Fsp4HI GCNGC 2 cut(s) 57, 60
GluI GCNGC 2 cut(s) 57, 60
HinfI GANTC 1 cut(s) 107
Hpy188I TCNGA 1 cut(s) 118
HpyAV CCTTC 1 cut(s) 152
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 1 cut(s) 11
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 1 cut(s) 117
HpySE526I ACGT 1 cut(s) 126
Lsp1109I GCAGC 1 cut(s) 68
MaeII ACGT 1 cut(s) 126
MluCI AATT 1 cut(s) 4
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 2 cut(s) 79, 124
MseI TTAA 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 56
NmeAIII GCCGAG 1 cut(s) 88
PkrI GCNGC 2 cut(s) 58, 61
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 2 cut(s) 57, 60
SchI GAGTC 1 cut(s) 101
SetI ASST 3 cut(s) 71, 103, 129
SgeI CNNG 5 cut(s) 24, 38, 76, 110, 154
Sse9I AATT 1 cut(s) 4
SsiI CCGC 1 cut(s) 60
TaiI ACGT 1 cut(s) 129
TaqII GACCGA 1 cut(s) 170
TasI AATT 1 cut(s) 4
TauI GCSGC 1 cut(s) 62
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 1 cut(s) 175
TseI GCWGC 1 cut(s) 56
TspDTI ATGAA 2 cut(s) 17, 179
TspRI CASTG 1 cut(s) 175
XapI RAATTY 1 cut(s) 4
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.