RLG00000008600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0005181
Physical Location & Seq
Forward (+)
32971113 .. 32971587
475 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008600

Sequence Viewer

Length: 393 bp
ATGGAACAGAAGAGTTTTGCAGGCAATGGAAGTCTCACTTTATATATAAAGACTAAAGCCAAAGCAGCAACCAAGGCCTATCCATTTCCAGTGTTATCACAGGAATATGGCTTTTTCCCCCGCAGCATCGCGCGGGCTACTTTCCTAGTATTATTAAAATGGGGGTTTTATGATGCAAACCCTACAACTGTACGTGATATCTTTCTGGGTGGGCACCCAATTACACTTTATCCATTTAAAGACACTATTGGCACTGTGAATTCATATATATACACTCAAAAAAAGGGCACTGCATGCCAAGATATACTAATTAGGTTGTCATTCCTTGACTACCCCCATTGCCCTATAAGCTTTTCGATCTTCTGCCCGAAATATATATCCATTAAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.71

Weight (kDa)

9.49

Isoelectric Point (pI)

30.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 213
AccII CGCG 2 cut(s) 131, 133
AciI CCGC 2 cut(s) 121, 133
AcsI RAATTY 1 cut(s) 259
AfaI GTAC 1 cut(s) 192
AluBI AGCT 1 cut(s) 351
AluI AGCT 1 cut(s) 351
Alw26I GTCTC 1 cut(s) 38
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 2 cut(s) 65, 123
ApoI RAATTY 1 cut(s) 259
AspLEI GCGC 1 cut(s) 133
BaeGI GKGCMC 2 cut(s) 216, 290
BanI GGYRCC 1 cut(s) 213
BbvI GCAGC 2 cut(s) 77, 135
BcoDI GTCTC 1 cut(s) 38
BfaI CTAG 1 cut(s) 146
BisI GCNGC 2 cut(s) 66, 124
BlsI GCNGC 2 cut(s) 67, 125
BmiI GGNNCC 1 cut(s) 215
BmsI GCATC 2 cut(s) 135, 163
BsaAI YACGTR 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 72
Bse1I ACTGG 1 cut(s) 89
Bse3DI GCAATG 2 cut(s) 31, 337
BseDI CCNNGG 1 cut(s) 72
BseMI GCAATG 2 cut(s) 31, 337
BseNI ACTGG 1 cut(s) 89
BseSI GKGCMC 2 cut(s) 216, 290
BseXI GCAGC 2 cut(s) 77, 135
Bsh1236I CGCG 2 cut(s) 131, 133
BshFI GGCC 1 cut(s) 77
BshNI GGYRCC 1 cut(s) 213
BsmAI GTCTC 1 cut(s) 38
BsnI GGCC 1 cut(s) 77
Bsp1286I GDGCHC 2 cut(s) 216, 290
Bsp143I GATC 1 cut(s) 357
BspACI CCGC 2 cut(s) 121, 133
BspANI GGCC 1 cut(s) 77
BspFNI CGCG 2 cut(s) 131, 133
BspLI GGNNCC 1 cut(s) 215
BspT107I GGYRCC 1 cut(s) 213
BsrDI GCAATG 2 cut(s) 31, 337
BsrI ACTGG 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 1 cut(s) 357
BssT1I CCWWGG 1 cut(s) 72
Bst4CI ACNGT 2 cut(s) 190, 256
Bst6I CTCTTC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 294
BstBAI YACGTR 1 cut(s) 194
BstC8I GCNNGC 3 cut(s) 22, 135, 295
BstFNI CGCG 2 cut(s) 131, 133
BstHHI GCGC 1 cut(s) 133
BstKTI GATC 1 cut(s) 360
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 1 cut(s) 357
BstMWI GCNNNNNNNGC 4 cut(s) 65, 74, 294, 348
BstNSI RCATGY 1 cut(s) 297
BstSLI GKGCMC 2 cut(s) 216, 290
BstUI CGCG 2 cut(s) 131, 133
BstV1I GCAGC 2 cut(s) 77, 135
BsuRI GGCC 1 cut(s) 77
BtgZI GCGATG 1 cut(s) 112
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 3 cut(s) 96, 252, 288
Cac8I GCNNGC 3 cut(s) 22, 135, 295
CfoI GCGC 1 cut(s) 133
Csp6I GTAC 1 cut(s) 191
CviAII CATG 1 cut(s) 294
CviJI RGCY 5 cut(s) 59, 77, 111, 137, 351
CviKI_1 RGCY 5 cut(s) 59, 77, 111, 137, 351
CviQI GTAC 1 cut(s) 191
DpnI GATC 1 cut(s) 359
DpnII GATC 1 cut(s) 357
DraI TTTAAA 1 cut(s) 238
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
Eco130I CCWWGG 1 cut(s) 72
Eco147I AGGCCT 1 cut(s) 77
Eco32I GATATC 1 cut(s) 199
EcoRI GAATTC 1 cut(s) 259
EcoRV GATATC 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 72
FaeI CATG 1 cut(s) 297
FalI AAGNNNNNCTT 2 cut(s) 22, 54
FatI CATG 1 cut(s) 293
FauI CCCGC 2 cut(s) 126, 128
Fnu4HI GCNGC 2 cut(s) 66, 124
Fsp4HI GCNGC 2 cut(s) 66, 124
FspBI CTAG 1 cut(s) 146
GlaI GCGC 1 cut(s) 132
GluI GCNGC 2 cut(s) 66, 124
HaeIII GGCC 1 cut(s) 77
HhaI GCGC 1 cut(s) 133
Hin1II CATG 1 cut(s) 297
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HindIII AAGCTT 1 cut(s) 349
HpyCH4III ACNGT 2 cut(s) 190, 256
HpyCH4IV ACGT 1 cut(s) 193
HpyCH4V TGCA 3 cut(s) 20, 176, 293
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 74, 294, 348
HpySE526I ACGT 1 cut(s) 193
Hsp92II CATG 1 cut(s) 297
HspAI GCGC 1 cut(s) 131
Kzo9I GATC 1 cut(s) 357
LpnPI CCDG 4 cut(s) 6, 86, 102, 191
Lsp1109I GCAGC 2 cut(s) 77, 135
LweI GCATC 2 cut(s) 135, 163
MaeI CTAG 1 cut(s) 146
MaeII ACGT 1 cut(s) 193
MalI GATC 1 cut(s) 359
MboI GATC 1 cut(s) 357
MboII GAAGA 2 cut(s) 22, 352
MhlI GDGCHC 2 cut(s) 216, 290
MluCI AATT 3 cut(s) 219, 259, 309
MseI TTAA 3 cut(s) 155, 237, 384
MvnI CGCG 2 cut(s) 131, 133
MwoI GCNNNNNNNGC 4 cut(s) 65, 74, 294, 348
NdeII GATC 1 cut(s) 357
NlaIII CATG 1 cut(s) 297
NlaIV GGNNCC 1 cut(s) 215
NspI RCATGY 1 cut(s) 297
PaeI GCATGC 1 cut(s) 297
PceI AGGCCT 1 cut(s) 77
PkrI GCNGC 2 cut(s) 67, 125
Ppu21I YACGTR 1 cut(s) 194
PspN4I GGNNCC 1 cut(s) 215
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
SaqAI TTAA 3 cut(s) 155, 237, 384
SatI GCNGC 2 cut(s) 66, 124
Sau3AI GATC 1 cut(s) 357
SduI GDGCHC 2 cut(s) 216, 290
SetI ASST 3 cut(s) 196, 317, 353
SfaNI GCATC 2 cut(s) 135, 163
SphI GCATGC 1 cut(s) 297
Sse9I AATT 3 cut(s) 219, 259, 309
SseBI AGGCCT 1 cut(s) 77
SsiI CCGC 2 cut(s) 121, 133
SspMI CTAG 1 cut(s) 146
StuI AGGCCT 1 cut(s) 77
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 2 cut(s) 190, 256
TaiI ACGT 1 cut(s) 196
TaqI TCGA 1 cut(s) 356
TasI AATT 3 cut(s) 219, 259, 309
Tru1I TTAA 3 cut(s) 155, 237, 384
Tru9I TTAA 3 cut(s) 155, 237, 384
TscAI CASTG 3 cut(s) 96, 259, 295
TseI GCWGC 2 cut(s) 65, 123
TspDTI ATGAA 1 cut(s) 252
TspRI CASTG 3 cut(s) 96, 259, 295
XapI RAATTY 1 cut(s) 259
XceI RCATGY 1 cut(s) 297
XspI CTAG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.