Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0005181

Physical Location & Seq

Genomic Coordinates Forward (+)

42241361 .. 42243697

Gene Structure 2337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G028080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGCTTATGAAAACACTCTACTGCACTATGACCGTTCTTAAATTGCAGGGCTTCAACTATGGAGGCTCACTAAGACCCAGATTCTCTTTCACCACTAAAGACACAGACAAAGGCATTCGCATTCAACCCATTAAAGCCAAAGCAGCAACCACCGAGGCCTCTCCGTTTCCTCTGCTTCAGTCTCCCCGAGCTAAAGACTCTCCCTCTGAGTTGGAGCCAGCAGATCCTGATTTCTACAAGATAGGGTTTGTTAGAAGTATGAGAGCTTATGGAATTGAATTTAAAGAAGGCCCAGATGGGTTTGGAGTTTATGCTTCCAAGGATGTTGAACCACTTCGCCGTGCTAGGGTGATAATGGAAATACCACTAGAACTGATGTTAACTATAAGCCAAAAGCTCCCATGGATGTTTTTCCCAGATATAGTACCGGTGGGTCACCCAATATTTGATATCATCAATTCAACAAGAAGAGAAGCTACGCTCAGCTTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

164

Amino Acids

18.57

Weight (kDa)

9.24

Isoelectric Point (pI)

54.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005181)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13130
malus_domestica	MD05G1244700.v1.1
pyrus_communis	pycom05g22120
rosa_chinensis	RchiOBHm_Chr1g0331441 RchiOBHm_Chr1g0378801 RchiOBHm_Chr2g0167351 RchiOBHm_Chr3g0456081 RchiOBHm_Chr3g0482001 RchiOBHm_Chr5g0063511
rosa_laevigata	RLG00000008600
rosa_multiflora	Rmu_sc0001208.1_g000033
rosa_roxburghii	Rroxscaffold_4G00300020
rosa_rugosa	Rorug02G0631000 Rorug05G0525600 Rorug05G0556200 Rorug06G0064800 Rorug06G0243200 Rorug07G0201200 Rorug07G0222900
rosa_samantha	Rh1BG283100 Rh1DG314900 Rh3AG245400 Rh3DG323100 Rh5BG155400 Rh5DG155900 Rh6BG246300 Rh7DG405100
rosa_wichuraiana	Rw2G025960 Rw4G010270 Rw5G028080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	218
AcsI	RAATTY	1 cut(s)	278
AcuI	CTGAAG	1 cut(s)	161
AfaI	GTAC	1 cut(s)	426
AfiI	CCNNNNNNNGG	1 cut(s)	346
AgeI	ACCGGT	1 cut(s)	427
AgsI	TTSAA	5 cut(s)	55, 125, 278, 329, 462
AluBI	AGCT	5 cut(s)	191, 266, 397, 476, 486
AluI	AGCT	5 cut(s)	191, 266, 397, 476, 486
Alw26I	GTCTC	1 cut(s)	186
AlwI	GGATC	1 cut(s)	218
AlwNI	CAGNNNCTG	1 cut(s)	227
Ama87I	CYCGRG	1 cut(s)	186
AoxI	GGCC	2 cut(s)	156, 289
ApeKI	GCWGC	1 cut(s)	143
ApoI	RAATTY	1 cut(s)	278
AsiGI	ACCGGT	1 cut(s)	427
Asp700I	GAANNNNTTC	1 cut(s)	333
AspS9I	GGNCC	1 cut(s)	290
AsuHPI	GGTGA	3 cut(s)	82, 361, 428
AvaI	CYCGRG	1 cut(s)	186
BarI	GAAGNNNNNNTAC	2 cut(s)	460, 492
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	1 cut(s)	290
BceAI	ACGGC	1 cut(s)	324
BcoDI	GTCTC	1 cut(s)	186
BfaI	CTAG	2 cut(s)	345, 368
BisI	GCNGC	1 cut(s)	144
BlpI	GCTNAGC	1 cut(s)	482
BlsI	GCNGC	1 cut(s)	145
BmeT110I	CYCGRG	1 cut(s)	186
BmgT120I	GGNCC	1 cut(s)	290
BmiI	GGNNCC	1 cut(s)	216
Bpu1102I	GCTNAGC	1 cut(s)	482
BsaJI	CCNNGG	3 cut(s)	153, 318, 401
BsaWI	WCCGGW	1 cut(s)	427
Bsc4I	CCNNNNNNNGG	1 cut(s)	346
Bse118I	RCCGGY	1 cut(s)	427
BseDI	CCNNGG	3 cut(s)	153, 318, 401
BseGI	GGATG	2 cut(s)	328, 411
BseLI	CCNNNNNNNGG	1 cut(s)	346
BseMII	CTCAG	1 cut(s)	198
BseXI	GCAGC	1 cut(s)	155
BsgI	GTGCAG	1 cut(s)	7
BshFI	GGCC	2 cut(s)	158, 291
BshTI	ACCGGT	1 cut(s)	427
BsiHKCI	CYCGRG	1 cut(s)	186
BsiSI	CCGG	1 cut(s)	428
BslI	CCNNNNNNNGG	1 cut(s)	346
BsmAI	GTCTC	1 cut(s)	186
BsmI	GAATGC	2 cut(s)	114, 120
BsnI	GGCC	2 cut(s)	158, 291
BsoBI	CYCGRG	1 cut(s)	186
Bsp143I	GATC	1 cut(s)	223
Bsp1720I	GCTNAGC	1 cut(s)	482
Bsp19I	CCATGG	1 cut(s)	401
BspANI	GGCC	2 cut(s)	158, 291
BspCNI	CTCAG	2 cut(s)	199, 495
BspLI	GGNNCC	1 cut(s)	216
BspPI	GGATC	1 cut(s)	218
BsrFI	RCCGGY	1 cut(s)	427
BssAI	RCCGGY	1 cut(s)	427
BssECI	CCNNGG	3 cut(s)	153, 318, 401
BssMI	GATC	1 cut(s)	223
BssT1I	CCWWGG	2 cut(s)	318, 401
Bst4CI	ACNGT	1 cut(s)	34
Bst6I	CTCTTC	1 cut(s)	463
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	3 cut(s)	71, 207, 482
BstDSI	CCRYGG	1 cut(s)	401
BstEII	GGTNACC	1 cut(s)	434
BstF5I	GGATG	2 cut(s)	328, 411
BstKTI	GATC	1 cut(s)	226
BstMAI	GTCTC	1 cut(s)	186
BstMBI	GATC	1 cut(s)	223
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstPI	GGTNACC	1 cut(s)	434
BstV1I	GCAGC	1 cut(s)	155
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuRI	GGCC	2 cut(s)	158, 291
BtgI	CCRYGG	1 cut(s)	401
BtsCI	GGATG	2 cut(s)	328, 411
Cac8I	GCNNGC	1 cut(s)	219
CaiI	CAGNNNCTG	1 cut(s)	227
Cfr10I	RCCGGY	1 cut(s)	427
Cfr13I	GGNCC	1 cut(s)	290
Csp6I	GTAC	1 cut(s)	425
CspAI	ACCGGT	1 cut(s)	427
CviAII	CATG	1 cut(s)	402
CviQI	GTAC	1 cut(s)	425
DdeI	CTNAG	3 cut(s)	71, 207, 482
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
DraI	TTTAAA	1 cut(s)	283
Eam1104I	CTCTTC	1 cut(s)	463
EarI	CTCTTC	1 cut(s)	463
Eco130I	CCWWGG	2 cut(s)	318, 401
Eco147I	AGGCCT	1 cut(s)	158
Eco32I	GATATC	1 cut(s)	451
Eco57I	CTGAAG	1 cut(s)	161
Eco88I	CYCGRG	1 cut(s)	186
Eco91I	GGTNACC	1 cut(s)	434
EcoO65I	GGTNACC	1 cut(s)	434
EcoRV	GATATC	1 cut(s)	451
EcoT14I	CCWWGG	2 cut(s)	318, 401
ErhI	CCWWGG	2 cut(s)	318, 401
FaeI	CATG	1 cut(s)	405
FaiI	YATR	9 cut(s)	8, 29, 60, 260, 270, 312, 386, 403, 422
FatI	CATG	1 cut(s)	401
Fnu4HI	GCNGC	1 cut(s)	144
FokI	GGATG	2 cut(s)	335, 418
Fsp4HI	GCNGC	1 cut(s)	144
FspBI	CTAG	2 cut(s)	345, 368
GluI	GCNGC	1 cut(s)	144
HaeIII	GGCC	2 cut(s)	158, 291
HapII	CCGG	1 cut(s)	428
Hin1II	CATG	1 cut(s)	405
HincII	GTYRAC	1 cut(s)	381
HindII	GTYRAC	1 cut(s)	381
HinfI	GANTC	2 cut(s)	81, 197
HpaI	GTTAAC	1 cut(s)	381
HpaII	CCGG	1 cut(s)	428
HphI	GGTGA	3 cut(s)	82, 361, 428
Hpy166II	GTNNAC	1 cut(s)	381
Hpy188I	TCNGA	1 cut(s)	208
Hpy188III	TCNNGA	1 cut(s)	227
Hpy8I	GTNNAC	1 cut(s)	381
HpyAV	CCTTC	1 cut(s)	281
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4V	TGCA	2 cut(s)	24, 46
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpyF3I	CTNAG	3 cut(s)	71, 207, 482
Hsp92II	CATG	1 cut(s)	405
KspAI	GTTAAC	1 cut(s)	381
Kzo9I	GATC	1 cut(s)	223
LmnI	GCTCC	2 cut(s)	214, 402
LpnPI	CCDG	7 cut(s)	32, 91, 231, 240, 306, 429, 441
Lsp1109I	GCAGC	1 cut(s)	155
MaeI	CTAG	2 cut(s)	345, 368
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MboII	GAAGA	1 cut(s)	480
MflI	RGATCY	1 cut(s)	223
MluCI	AATT	4 cut(s)	41, 273, 278, 457
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	192
MnlI	CCTC	5 cut(s)	56, 148, 169, 180, 214
MroXI	GAANNNNTTC	1 cut(s)	333
MseI	TTAA	4 cut(s)	39, 132, 282, 380
MspI	CCGG	1 cut(s)	428
Mva1269I	GAATGC	2 cut(s)	114, 120
MwoI	GCNNNNNNNGC	1 cut(s)	143
NcoI	CCATGG	1 cut(s)	401
NdeII	GATC	1 cut(s)	223
NlaIII	CATG	1 cut(s)	405
NlaIV	GGNNCC	1 cut(s)	216
NmuCI	GTSAC	1 cut(s)	434
PceI	AGGCCT	1 cut(s)	158
PctI	GAATGC	2 cut(s)	114, 120
PdmI	GAANNNNTTC	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	81
PinAI	ACCGGT	1 cut(s)	427
PkrI	GCNGC	1 cut(s)	145
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
PspEI	GGTNACC	1 cut(s)	434
PspN4I	GGNNCC	1 cut(s)	216
PspPI	GGNCC	1 cut(s)	290
PstNI	CAGNNNCTG	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	223
RsaI	GTAC	1 cut(s)	426
RsaNI	GTAC	1 cut(s)	425
SaqAI	TTAA	4 cut(s)	39, 132, 282, 380
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	1 cut(s)	223
Sau96I	GGNCC	1 cut(s)	290
SchI	GAGTC	1 cut(s)	191
SetI	ASST	5 cut(s)	193, 268, 399, 478, 488
Sse9I	AATT	4 cut(s)	41, 273, 278, 457
SseBI	AGGCCT	1 cut(s)	158
SspI	AATATT	1 cut(s)	444
SspMI	CTAG	2 cut(s)	345, 368
StuI	AGGCCT	1 cut(s)	158
StyI	CCWWGG	2 cut(s)	318, 401
TaaI	ACNGT	1 cut(s)	34
TasI	AATT	4 cut(s)	41, 273, 278, 457
TfiI	GAWTC	1 cut(s)	81
Tru1I	TTAA	4 cut(s)	39, 132, 282, 380
Tru9I	TTAA	4 cut(s)	39, 132, 282, 380
TseFI	GTSAC	1 cut(s)	434
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	434
TspDTI	ATGAA	2 cut(s)	23, 478
TspGWI	ACGGA	1 cut(s)	153
XapI	RAATTY	1 cut(s)	278
XmnI	GAANNNNTTC	1 cut(s)	333
XspI	CTAG	2 cut(s)	345, 368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.