Rw5G013880

Ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
16387240 .. 16391495
4256 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G013880.1

Sequence Viewer

Length: 1470 bp
ATGGCTTCTTCTCTTCCTCTTCATCACCCTTCCCACTGCCTCATCTCCAATCCTCAGTTGCAGGGCTTCAACTATGGAGGCTCACCAAGACCCAGATTCGCTTTCACCACTAAAGACACAGACAAAGGCATTCGCATTCAACCCATTAAAGCCAAAGCAGCCACCACCGAGGCCTCTCCGTTTCCTCTGCTTCAGTCTCCCCGAGCTGAAGACTCTCCCTCTGAGTTAGAGCCAGCAGATCCGGATTTCTACAAGATAGGGTTTGTTAGAAGTATGAGAGCTTATGGAATTGAATTTAAAGAAGGCCCAGATGGGTTTGGAGTTTATGCTTCCAAGGATGTTGAACCACTTCGCCGTGCTAGGGTGATAATGGAAATACCACTAGAACTGATGTTAACTATAAGCCAACAGCTCCCATGGATGTTTTTCCCAGATATAGTACCGGTGGGTCACCCAATATTTGATATCATCAATTCAACTGATCCAGAGACAGGTTGGGATCTAAGGTTAGCTTGCCTTCTTTTGTATGCATTTGATCGGGAGGATAACTTTTGGCAGTTGTATGGTGATTTTTTACCCAGTGCAGATGAGTGCCCCAGTCTGCTTTTAGCTAGCGAGGAGGAGCTTTCAGAACTACAGGATCCCAATCTTGCTTCAACAATGAGAGAACAGCAACGCCGAGCTCTGGAATTTTGGGAGAAAAATTGGCATTCTGGTGTACCCCTTAAGATTAAACGCCTCGCTCGTGATTCTGAGAGATTCATTTGGGCACTGAGTATGGCACAATCACGATGCATTGGCATGCAAATTAGAATTGGTGCACTTTTTCAAGACTCAAATATGCTAATTCCTTATGCAGACATGCTAAACCATTCCTTCCAGCCAAATTGTTTTCTCCATTGGCGGTTTAAGGATCGTATGCTTGAAGTAATGATAAATGCTGGACAACGGATTAAGAAAGGTGATGAGATGACTATCAATTACATGAGTGGACAACAGAACAACATGTTGATGCAAAGATATGGCTTTTCTTCATCTGTGAATCCATGGGATGTAATTCAATTCTCTGGAAATGCACGTATTCATTTGGATTCCTTCTTGTCAGTATTCAATATCTCAGGACTTCCCCAAGAATACTATCATAACACAGATCGCCTATCTAGTGGAGGGGATACTTTTGTTGACGGAGCTGTCATTGCAGCAGCAAGAACATTGCCTACTTGGTCAGATGGGGATGTGCCTCCAATCCCAAGCATGGAAAGACGAGCGATAAAGGAATTACAGGAAGAATGCAGGCAGATGCTTGCCGCATTTCCTACCAACTCTAAGGAAGACCAAAATATCCTAGATTCTATGCCAGACGCTGCTAGGACGCTTGAAGCTGTGGTCAAGTATAGGTTGCACCGGAAGTTGTTCATCGAGAAAGTCATGCAGGCACTGGATCTATATCAAGAACGAATATTATTCTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

489

Amino Acids

55.95

Weight (kDa)

5.43

Isoelectric Point (pI)

53.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 105 - 328 3.8e-10 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011165)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1190
AccIII TCCGGA 1 cut(s) 241
AciI CCGC 2 cut(s) 904, 1308
AclWI GGATC 7 cut(s) 233, 476, 507, 635, 648, 921, 1449
AcsI RAATTY 2 cut(s) 293, 689
AcuI CTGAAG 2 cut(s) 176, 228
AfaI GTAC 2 cut(s) 441, 720
AfiI CCNNNNNNNGG 4 cut(s) 361, 491, 685, 1255
AflII CTTAAG 1 cut(s) 725
AflIII ACRYGT 1 cut(s) 1005
AgeI ACCGGT 1 cut(s) 442
AluBI AGCT 9 cut(s) 206, 281, 412, 512, 611, 625, 683, 1190, 1382
AluI AGCT 9 cut(s) 206, 281, 412, 512, 611, 625, 683, 1190, 1382
Alw21I GWGCWC 2 cut(s) 685, 823
Alw26I GTCTC 2 cut(s) 201, 482
Alw44I GTGCAC 1 cut(s) 819
AlwI GGATC 7 cut(s) 233, 476, 507, 635, 648, 921, 1449
AlwNI CAGNNNCTG 2 cut(s) 1364, 1438
Ama87I CYCGRG 1 cut(s) 201
Aor13HI TCCGGA 1 cut(s) 241
AoxI GGCC 2 cut(s) 171, 304
ApaLI GTGCAC 1 cut(s) 819
ApeKI GCWGC 4 cut(s) 158, 1199, 1202, 1364
ApoI RAATTY 2 cut(s) 293, 689
AsiGI ACCGGT 1 cut(s) 442
Asp700I GAANNNNTTC 2 cut(s) 348, 1412
AspS9I GGNCC 1 cut(s) 305
AsuHPI GGTGA 7 cut(s) 17, 75, 97, 376, 443, 578, 974
AsuNHI GCTAGC 1 cut(s) 611
AvaI CYCGRG 1 cut(s) 201
BaeGI GKGCMC 3 cut(s) 596, 772, 823
BaeI ACNNNNGTAYC 2 cut(s) 1164, 1197
BamHI GGATCC 1 cut(s) 640
BanII GRGCYC 1 cut(s) 685
BauI CACGAG 1 cut(s) 744
BbsI GAAGAC 2 cut(s) 216, 1338
Bbv12I GWGCWC 2 cut(s) 685, 823
BbvI GCAGC 4 cut(s) 170, 1211, 1214, 1351
BccI CCATC 2 cut(s) 305, 1223
BceAI ACGGC 1 cut(s) 339
BciVI GTATCC 1 cut(s) 1165
BcoDI GTCTC 2 cut(s) 201, 482
BfaI CTAG 6 cut(s) 360, 383, 612, 1161, 1346, 1368
BfmI CTRYAG 1 cut(s) 635
BfrI CTTAAG 1 cut(s) 725
BfuI GTATCC 1 cut(s) 1165
BisI GCNGC 5 cut(s) 159, 1200, 1203, 1308, 1365
BlsI GCNGC 5 cut(s) 160, 1201, 1204, 1309, 1366
BmeT110I CYCGRG 1 cut(s) 201
BmgT120I GGNCC 1 cut(s) 305
BmiI GGNNCC 1 cut(s) 642
BmrI ACTGGG 2 cut(s) 573, 591
BmsI GCATC 3 cut(s) 782, 1002, 1290
BmtI GCTAGC 1 cut(s) 615
BmuI ACTGGG 2 cut(s) 573, 591
BpiI GAAGAC 2 cut(s) 216, 1338
BsaAI YACGTR 1 cut(s) 1079
BsaBI GATNNNNATC 3 cut(s) 645, 974, 1446
BsaJI CCNNGG 4 cut(s) 168, 333, 416, 1046
BsaWI WCCGGW 3 cut(s) 241, 442, 1404
Bsc4I CCNNNNNNNGG 4 cut(s) 361, 491, 685, 1255
Bse118I RCCGGY 1 cut(s) 442
Bse1I ACTGG 3 cut(s) 579, 597, 1443
Bse3DI GCAATG 2 cut(s) 1194, 1211
Bse8I GATNNNNATC 3 cut(s) 645, 974, 1446
BseAI TCCGGA 1 cut(s) 241
BseDI CCNNGG 4 cut(s) 168, 333, 416, 1046
BseGI GGATG 4 cut(s) 343, 426, 1057, 1240
BseJI GATNNNNATC 3 cut(s) 645, 974, 1446
BseLI CCNNNNNNNGG 4 cut(s) 361, 491, 685, 1255
BseMI GCAATG 2 cut(s) 1194, 1211
BseMII CTCAG 5 cut(s) 68, 213, 744, 764, 1131
BseNI ACTGG 3 cut(s) 579, 597, 1443
BseRI GAGGAG 2 cut(s) 632, 635
BseSI GKGCMC 3 cut(s) 596, 772, 823
BseXI GCAGC 4 cut(s) 170, 1211, 1214, 1351
BsgI GTGCAG 1 cut(s) 603
BshFI GGCC 2 cut(s) 173, 306
BshTI ACCGGT 1 cut(s) 442
BsiHKAI GWGCWC 2 cut(s) 685, 823
BsiHKCI CYCGRG 1 cut(s) 201
BsiSI CCGG 3 cut(s) 242, 443, 1405
BslI CCNNNNNNNGG 4 cut(s) 361, 491, 685, 1255
BsmAI GTCTC 2 cut(s) 201, 482
BsmI GAATGC 4 cut(s) 129, 135, 709, 1295
BsnI GGCC 2 cut(s) 173, 306
BsoBI CYCGRG 1 cut(s) 201
Bsp1286I GDGCHC 4 cut(s) 596, 685, 772, 823
Bsp13I TCCGGA 1 cut(s) 241
Bsp143I GATC 8 cut(s) 238, 481, 499, 535, 640, 913, 1150, 1441
Bsp19I CCATGG 2 cut(s) 416, 1046
BspACI CCGC 2 cut(s) 904, 1308
BspANI GGCC 2 cut(s) 173, 306
BspCNI CTCAG 5 cut(s) 67, 214, 745, 765, 1130
BspEI TCCGGA 1 cut(s) 241
BspLI GGNNCC 1 cut(s) 642
BspOI GCTAGC 1 cut(s) 615
BspPI GGATC 7 cut(s) 233, 476, 507, 635, 648, 921, 1449
BspTI CTTAAG 1 cut(s) 725
BsrDI GCAATG 2 cut(s) 1194, 1211
BsrFI RCCGGY 1 cut(s) 442
BsrI ACTGG 3 cut(s) 579, 597, 1443
BssAI RCCGGY 1 cut(s) 442
BssECI CCNNGG 4 cut(s) 168, 333, 416, 1046
BssMI GATC 8 cut(s) 238, 481, 499, 535, 640, 913, 1150, 1441
BssSI CACGAG 1 cut(s) 744
BssT1I CCWWGG 3 cut(s) 333, 416, 1046
Bst2BI CACGAG 1 cut(s) 744
Bst6I CTCTTC 2 cut(s) 18, 24
BstAFI CTTAAG 1 cut(s) 725
BstBAI YACGTR 1 cut(s) 1079
BstC8I GCNNGC 7 cut(s) 234, 514, 613, 803, 1295, 1305, 1434
BstDEI CTNAG 7 cut(s) 54, 222, 503, 753, 773, 1117, 1326
BstDSI CCRYGG 2 cut(s) 416, 1046
BstEII GGTNACC 1 cut(s) 449
BstF5I GGATG 4 cut(s) 343, 426, 1057, 1240
BstKTI GATC 8 cut(s) 241, 484, 502, 538, 643, 916, 1153, 1444
BstMAI GTCTC 2 cut(s) 201, 482
BstMBI GATC 8 cut(s) 238, 481, 499, 535, 640, 913, 1150, 1441
BstMWI GCNNNNNNNGC 2 cut(s) 158, 1196
BstNSI RCATGY 3 cut(s) 805, 865, 1009
BstPI GGTNACC 1 cut(s) 449
BstSFI CTRYAG 1 cut(s) 635
BstSLI GKGCMC 3 cut(s) 596, 772, 823
BstV1I GCAGC 4 cut(s) 170, 1211, 1214, 1351
BstV2I GAAGAC 2 cut(s) 216, 1338
BstX2I RGATCY 4 cut(s) 238, 499, 640, 1441
BstYI RGATCY 4 cut(s) 238, 499, 640, 1441
BsuI GTATCC 1 cut(s) 1165
BsuRI GGCC 2 cut(s) 173, 306
BtgI CCRYGG 2 cut(s) 416, 1046
BtsCI GGATG 4 cut(s) 343, 426, 1057, 1240
BtsI GCAGTG 1 cut(s) 34
BtsIMutI CAGTG 4 cut(s) 34, 586, 770, 1436
Cac8I GCNNGC 7 cut(s) 234, 514, 613, 803, 1295, 1305, 1434
CaiI CAGNNNCTG 2 cut(s) 1364, 1438
Cfr10I RCCGGY 1 cut(s) 442
Cfr13I GGNCC 1 cut(s) 305
CseI GACGC 2 cut(s) 1370, 1381
Csp6I GTAC 2 cut(s) 440, 719
CspAI ACCGGT 1 cut(s) 442
CviAII CATG 8 cut(s) 417, 802, 862, 985, 1006, 1047, 1255, 1429
CviQI GTAC 2 cut(s) 440, 719
DdeI CTNAG 7 cut(s) 54, 222, 503, 753, 773, 1117, 1326
DpnI GATC 8 cut(s) 240, 483, 501, 537, 642, 915, 1152, 1443
DpnII GATC 8 cut(s) 238, 481, 499, 535, 640, 913, 1150, 1441
DraI TTTAAA 1 cut(s) 298
DrdI GACNNNNNNGTC 1 cut(s) 1190
DseDI GACNNNNNNGTC 1 cut(s) 1190
Eam1104I CTCTTC 2 cut(s) 18, 24
EarI CTCTTC 2 cut(s) 18, 24
Ecl136II GAGCTC 1 cut(s) 683
Eco130I CCWWGG 3 cut(s) 333, 416, 1046
Eco147I AGGCCT 1 cut(s) 173
Eco24I GRGCYC 1 cut(s) 685
Eco32I GATATC 1 cut(s) 466
Eco53kI GAGCTC 1 cut(s) 683
Eco57I CTGAAG 2 cut(s) 176, 228
Eco88I CYCGRG 1 cut(s) 201
Eco91I GGTNACC 1 cut(s) 449
EcoICRI GAGCTC 1 cut(s) 683
EcoO65I GGTNACC 1 cut(s) 449
EcoRV GATATC 1 cut(s) 466
EcoT14I CCWWGG 3 cut(s) 333, 416, 1046
EcoT22I ATGCAT 2 cut(s) 532, 797
EcoT38I GRGCYC 1 cut(s) 685
ErhI CCWWGG 3 cut(s) 333, 416, 1046
FaeI CATG 8 cut(s) 420, 805, 865, 988, 1009, 1050, 1258, 1432
FalI AAGNNNNNCTT 2 cut(s) 496, 528
FatI CATG 8 cut(s) 416, 801, 861, 984, 1005, 1046, 1254, 1428
Fnu4HI GCNGC 5 cut(s) 159, 1200, 1203, 1308, 1365
FokI GGATG 4 cut(s) 350, 433, 1064, 1247
FriOI GRGCYC 1 cut(s) 685
Fsp4HI GCNGC 5 cut(s) 159, 1200, 1203, 1308, 1365
FspBI CTAG 6 cut(s) 360, 383, 612, 1161, 1346, 1368
GluI GCNGC 5 cut(s) 159, 1200, 1203, 1308, 1365
HaeIII GGCC 2 cut(s) 173, 306
HapII CCGG 3 cut(s) 242, 443, 1405
HgaI GACGC 2 cut(s) 1370, 1381
Hin1II CATG 8 cut(s) 420, 805, 865, 988, 1009, 1050, 1258, 1432
HincII GTYRAC 2 cut(s) 396, 1183
HindII GTYRAC 2 cut(s) 396, 1183
HinfI GANTC 8 cut(s) 96, 212, 749, 759, 833, 1042, 1091, 1349
HpaI GTTAAC 1 cut(s) 396
HpaII CCGG 3 cut(s) 242, 443, 1405
HphI GGTGA 7 cut(s) 17, 75, 97, 376, 443, 578, 974
Hpy166II GTNNAC 5 cut(s) 396, 719, 821, 992, 1183
Hpy188I TCNGA 5 cut(s) 223, 631, 754, 1228, 1469
Hpy8I GTNNAC 5 cut(s) 396, 719, 821, 992, 1183
HpyAV CCTTC 5 cut(s) 39, 296, 527, 886, 1105
HpyCH4IV ACGT 1 cut(s) 1078
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 1196
HpyF3I CTNAG 7 cut(s) 54, 222, 503, 753, 773, 1117, 1326
HpySE526I ACGT 1 cut(s) 1078
Hsp92II CATG 8 cut(s) 420, 805, 865, 988, 1009, 1050, 1258, 1432
Kpn2I TCCGGA 1 cut(s) 241
KspAI GTTAAC 1 cut(s) 396
Kzo9I GATC 8 cut(s) 238, 481, 499, 535, 640, 913, 1150, 1441
LmnI GCTCC 3 cut(s) 417, 622, 1187
Lsp1109I GCAGC 4 cut(s) 170, 1211, 1214, 1351
LweI GCATC 3 cut(s) 782, 1002, 1290
MaeI CTAG 6 cut(s) 360, 383, 612, 1161, 1346, 1368
MaeII ACGT 1 cut(s) 1078
MaeIII GTNAC 1 cut(s) 449
MalI GATC 8 cut(s) 240, 483, 501, 537, 642, 915, 1152, 1443
MboI GATC 8 cut(s) 238, 481, 499, 535, 640, 913, 1150, 1441
MboII GAAGA 6 cut(s) 5, 11, 221, 1023, 1298, 1343
MflI RGATCY 4 cut(s) 238, 499, 640, 1441
MhlI GDGCHC 4 cut(s) 596, 685, 772, 823
MlyI GAGTC 2 cut(s) 206, 827
Mph1103I ATGCAT 2 cut(s) 532, 797
MroI TCCGGA 1 cut(s) 241
MroXI GAANNNNTTC 2 cut(s) 348, 1412
MseI TTAA 7 cut(s) 147, 297, 395, 726, 732, 909, 954
MslI CAYNNNNRTG 3 cut(s) 714, 800, 1010
MspCI CTTAAG 1 cut(s) 725
MspI CCGG 3 cut(s) 242, 443, 1405
Mva1269I GAATGC 4 cut(s) 129, 135, 709, 1295
MwoI GCNNNNNNNGC 2 cut(s) 158, 1196
NcoI CCATGG 2 cut(s) 416, 1046
NdeII GATC 8 cut(s) 238, 481, 499, 535, 640, 913, 1150, 1441
NheI GCTAGC 1 cut(s) 611
NlaIII CATG 8 cut(s) 420, 805, 865, 988, 1009, 1050, 1258, 1432
NlaIV GGNNCC 1 cut(s) 642
NmeAIII GCCGAG 1 cut(s) 704
NmuCI GTSAC 1 cut(s) 449
NsiI ATGCAT 2 cut(s) 532, 797
NspI RCATGY 3 cut(s) 805, 865, 1009
PaeI GCATGC 1 cut(s) 805
PceI AGGCCT 1 cut(s) 173
PciI ACATGT 1 cut(s) 1005
PcsI WCGNNNNNNNCGW 1 cut(s) 742
PctI GAATGC 4 cut(s) 129, 135, 709, 1295
PdmI GAANNNNTTC 2 cut(s) 348, 1412
PfeI GAWTC 6 cut(s) 96, 749, 759, 1042, 1091, 1349
PinAI ACCGGT 1 cut(s) 442
PkrI GCNGC 5 cut(s) 160, 1201, 1204, 1309, 1366
PleI GAGTC 2 cut(s) 206, 827
PpsI GAGTC 2 cut(s) 206, 827
Ppu21I YACGTR 1 cut(s) 1079
PscI ACATGT 1 cut(s) 1005
Psp124BI GAGCTC 1 cut(s) 685
PspEI GGTNACC 1 cut(s) 449
PspN4I GGNNCC 1 cut(s) 642
PspPI GGNCC 1 cut(s) 305
PsrI GAACNNNNNNTAC 2 cut(s) 1201, 1233
PstNI CAGNNNCTG 2 cut(s) 1364, 1438
PsuI RGATCY 4 cut(s) 238, 499, 640, 1441
RsaI GTAC 2 cut(s) 441, 720
RsaNI GTAC 2 cut(s) 440, 719
RseI CAYNNNNRTG 3 cut(s) 714, 800, 1010
SacI GAGCTC 1 cut(s) 685
SaqAI TTAA 7 cut(s) 147, 297, 395, 726, 732, 909, 954
SatI GCNGC 5 cut(s) 159, 1200, 1203, 1308, 1365
Sau3AI GATC 8 cut(s) 238, 481, 499, 535, 640, 913, 1150, 1441
Sau96I GGNCC 1 cut(s) 305
SchI GAGTC 2 cut(s) 206, 827
SduI GDGCHC 4 cut(s) 596, 685, 772, 823
SfaNI GCATC 3 cut(s) 782, 1002, 1290
SfcI CTRYAG 1 cut(s) 635
SmiMI CAYNNNNRTG 3 cut(s) 714, 800, 1010
SmlI CTYRAG 1 cut(s) 725
SmoI CTYRAG 1 cut(s) 725
SphI GCATGC 1 cut(s) 805
SseBI AGGCCT 1 cut(s) 173
SsiI CCGC 2 cut(s) 904, 1308
SspI AATATT 2 cut(s) 459, 1461
SspMI CTAG 6 cut(s) 360, 383, 612, 1161, 1346, 1368
SstI GAGCTC 1 cut(s) 685
StuI AGGCCT 1 cut(s) 173
StyI CCWWGG 3 cut(s) 333, 416, 1046
TaiI ACGT 1 cut(s) 1081
TaqI TCGA 1 cut(s) 1419
TauI GCSGC 1 cut(s) 1310
TfiI GAWTC 6 cut(s) 96, 749, 759, 1042, 1091, 1349
Tru1I TTAA 7 cut(s) 147, 297, 395, 726, 732, 909, 954
Tru9I TTAA 7 cut(s) 147, 297, 395, 726, 732, 909, 954
TscAI CASTG 4 cut(s) 41, 586, 777, 1443
TseFI GTSAC 1 cut(s) 449
TseI GCWGC 4 cut(s) 158, 1199, 1202, 1364
Tsp45I GTSAC 1 cut(s) 449
TspDTI ATGAA 5 cut(s) 11, 751, 1023, 1073, 1405
TspGWI ACGGA 3 cut(s) 168, 964, 1200
TspRI CASTG 4 cut(s) 41, 586, 777, 1443
Vha464I CTTAAG 1 cut(s) 725
VneI GTGCAC 1 cut(s) 819
XapI RAATTY 2 cut(s) 293, 689
XceI RCATGY 3 cut(s) 805, 865, 1009
XcmI CCANNNNNNNNNTGG 1 cut(s) 492
XmnI GAANNNNTTC 2 cut(s) 348, 1412
XspI CTAG 6 cut(s) 360, 383, 612, 1161, 1346, 1368
Zsp2I ATGCAT 2 cut(s) 532, 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.