Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007200

Physical Location & Seq

Genomic Coordinates Forward (+)

10979741 .. 10982646

Gene Structure 2906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G20325.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGAGTTCTACTGTTTGGTGGGAAGGAGCTGAGAAGACACGAGTTCTCATAGCCCCAGATTCAGGTTGTGGCGGAAACAAACCCGGAGAACTGTTAACACTCCGCCATCCAAAATCAGAAAATGGAACATGCTTCCTTTTTAATAATGAGATGCTTCAAGAACTTCAGTGGTTTAAGCAATCTTATGGTTCTTGGTTCTTGGGAGATTACATATCTGAAGATGGAAGCTTATATATGGCCACTCCAGTTGATCCTGTTTTCATATTGTTGCCTATTTTCGACGAAGCAAGAATGAAGAAAGGTGAAAATTCTGGAAAGTTCAGGCAACTAGATGAGATTTTATTTGTGGAAGGATATCCTGGATATCAACATTTGTTGTCACTTGCAGAGAAGTGTATGGAAATCGTTTGTCAAACTCAAGAGGTTGGATCGATGAAGTTCTATCGGCTTGATAACTCGAAAGTCTTAGCTTGGTTAAGTTGTAAGATCTACTGTTTAAAGAATTCTCTACCGGAATTGGACAAAAACTATGCAGCTCAAGATGAGAAACAAACATTGGTAGATTCCGTCTCAATTGTAGGAGAGTACCTGAAGACCGAGCCTTGGTTGAAGCTTCTATATGATCATCTTGGACTCAAATTTGTTGACCCGACGATGAAAGAAACCAATATGGAGAATCTTCCAACTGCAAATGAGAATAACATGGCATCATCAAATTCAATACAGGAGAAAGCGAATAAGAAGCCAGGAAAACAGACAAAGCAAGCAAAGGTAGAGACTGGATCAAAGAACATAAGGGATATGTTTTCAAGGGCTTGTAAGAAAAAATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03030 map03030

Pfam Domains

Protein Families

RNase_H2-Ydr279

Protein Analysis

277

Amino Acids

31.52

Weight (kDa)

6.37

Isoelectric Point (pI)

40.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ydr279_N	PF17745	31 - 84	9.6e-09	Ydr279p protein triple barrel domain
RNase_H2-Ydr279	PF09468	87 - 236	2.3e-10	Ydr279p protein family (RNase H2 complex component) wHTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20325 AT4G20325
fragaria_vesca	FvH4_2g36540 FvH4_2g36540 FvH4_2g36540 FvH4_2g36540 FvH4_2g36540 FvH4_2g36540
malus_domestica	MD08G1125300.v1.1 MD15G1105100.v1.1
prunus_persica	Prupe.1G456900_v2.0.a1
pyrus_communis	pycom08g10420 pycom08g10430 pycom15g09540
rosa_chinensis	RchiOBHm_Chr6g0305311
rosa_laevigata	RLG00000010901
rosa_multiflora	Rmu_ssc0000148.1_g000002
rosa_roxburghii	Rroxscaffold_7G00162910
rosa_rugosa	Rorug06G0339500
rosa_samantha	Rh1CG439200 Rh6AG451100 Rh6BG450200 Rh6CG465400 Rh6DG451900
rosa_wichuraiana	Rw6G039320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	72, 103
AclWI	GGATC	3 cut(s)	245, 436, 790
AcoI	YGGCCR	1 cut(s)	237
AcsI	RAATTY	4 cut(s)	307, 502, 638, 715
AcuI	CTGAAG	3 cut(s)	149, 237, 611
AfaI	GTAC	1 cut(s)	587
AfiI	CCNNNNNNNGG	2 cut(s)	62, 603
AgsI	TTSAA	4 cut(s)	158, 610, 720, 810
AjnI	CCWGG	2 cut(s)	358, 745
AjuI	GAANNNNNNNTTGG	2 cut(s)	539, 571
AluBI	AGCT	5 cut(s)	29, 228, 470, 536, 613
AluI	AGCT	5 cut(s)	29, 228, 470, 536, 613
Alw26I	GTCTC	2 cut(s)	574, 770
AlwI	GGATC	3 cut(s)	245, 436, 790
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	1 cut(s)	533
ApoI	RAATTY	4 cut(s)	307, 502, 638, 715
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	1 cut(s)	314
BalI	TGGCCA	1 cut(s)	239
BauI	CACGAG	1 cut(s)	39
BbsI	GAAGAC	2 cut(s)	41, 599
BbvI	GCAGC	1 cut(s)	545
BccI	CCATC	2 cut(s)	114, 215
BciT130I	CCWGG	2 cut(s)	360, 747
BclI	TGATCA	1 cut(s)	622
BcnI	CCSGG	1 cut(s)	84
BcoDI	GTCTC	2 cut(s)	574, 770
BfaI	CTAG	1 cut(s)	329
BglII	AGATCT	1 cut(s)	486
BisI	GCNGC	1 cut(s)	534
BlsI	GCNGC	1 cut(s)	535
Bme1390I	CCNGG	3 cut(s)	84, 360, 747
BmrFI	CCNGG	3 cut(s)	84, 360, 747
BmsI	GCATC	2 cut(s)	141, 716
BpiI	GAAGAC	2 cut(s)	41, 599
BpmI	CTGGAG	1 cut(s)	228
BpuEI	CTTGAG	2 cut(s)	402, 522
BpuMI	CCSGG	1 cut(s)	84
Bsa29I	ATCGAT	1 cut(s)	431
BsaJI	CCNNGG	1 cut(s)	602
BsaWI	WCCGGW	1 cut(s)	511
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 603
Bse1I	ACTGG	2 cut(s)	245, 784
BseBI	CCWGG	2 cut(s)	360, 747
BseCI	ATCGAT	1 cut(s)	431
BseDI	CCNNGG	1 cut(s)	602
BseGI	GGATG	1 cut(s)	106
BseLI	CCNNNNNNNGG	2 cut(s)	62, 603
BseMII	CTCAG	1 cut(s)	21
BseNI	ACTGG	2 cut(s)	245, 784
BseXI	GCAGC	1 cut(s)	545
BshFI	GGCC	1 cut(s)	239
BshVI	ATCGAT	1 cut(s)	431
BsiSI	CCGG	2 cut(s)	84, 512
BslI	CCNNNNNNNGG	2 cut(s)	62, 603
BsmAI	GTCTC	2 cut(s)	574, 770
BsmBI	CGTCTC	1 cut(s)	574
BsnI	GGCC	1 cut(s)	239
Bsp143I	GATC	5 cut(s)	250, 428, 486, 622, 782
BspACI	CCGC	2 cut(s)	72, 103
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	1 cut(s)	22
BspDI	ATCGAT	1 cut(s)	431
BspPI	GGATC	3 cut(s)	245, 436, 790
BsrI	ACTGG	2 cut(s)	245, 784
BssECI	CCNNGG	1 cut(s)	602
BssMI	GATC	5 cut(s)	250, 428, 486, 622, 782
BssSI	CACGAG	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	602
Bst2BI	CACGAG	1 cut(s)	39
Bst2UI	CCWGG	2 cut(s)	360, 747
Bst4CI	ACNGT	3 cut(s)	13, 93, 494
BstC8I	GCNNGC	1 cut(s)	765
BstDEI	CTNAG	2 cut(s)	30, 466
BstF5I	GGATG	1 cut(s)	106
BstKTI	GATC	5 cut(s)	253, 431, 489, 625, 785
BstMAI	GTCTC	2 cut(s)	574, 770
BstMBI	GATC	5 cut(s)	250, 428, 486, 622, 782
BstNI	CCWGG	2 cut(s)	360, 747
BstNSI	RCATGY	1 cut(s)	132
BstSCI	CCNGG	3 cut(s)	82, 358, 745
BstV1I	GCAGC	1 cut(s)	545
BstV2I	GAAGAC	2 cut(s)	41, 599
BstX2I	RGATCY	1 cut(s)	486
BstYI	RGATCY	1 cut(s)	486
Bsu15I	ATCGAT	1 cut(s)	431
BsuRI	GGCC	1 cut(s)	239
BsuTUI	ATCGAT	1 cut(s)	431
BtsCI	GGATG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	173
Cac8I	GCNNGC	1 cut(s)	765
ClaI	ATCGAT	1 cut(s)	431
Csp6I	GTAC	1 cut(s)	586
CspCI	CAANNNNNGTGG	2 cut(s)	229, 264
CviAII	CATG	2 cut(s)	129, 703
CviQI	GTAC	1 cut(s)	586
DdeI	CTNAG	2 cut(s)	30, 466
DpnI	GATC	5 cut(s)	252, 430, 488, 624, 784
DpnII	GATC	5 cut(s)	250, 428, 486, 622, 782
DraI	TTTAAA	1 cut(s)	498
EaeI	YGGCCR	1 cut(s)	237
EciI	GGCGGA	2 cut(s)	87, 92
Eco130I	CCWWGG	1 cut(s)	602
Eco32I	GATATC	2 cut(s)	356, 365
Eco57I	CTGAAG	3 cut(s)	149, 237, 611
EcoRI	GAATTC	1 cut(s)	502
EcoRII	CCWGG	2 cut(s)	358, 745
EcoRV	GATATC	2 cut(s)	356, 365
EcoT14I	CCWWGG	1 cut(s)	602
ErhI	CCWWGG	1 cut(s)	602
Esp3I	CGTCTC	1 cut(s)	574
FaeI	CATG	2 cut(s)	132, 706
FatI	CATG	2 cut(s)	128, 702
FbaI	TGATCA	1 cut(s)	622
Fnu4HI	GCNGC	1 cut(s)	534
FokI	GGATG	1 cut(s)	93
Fsp4HI	GCNGC	1 cut(s)	534
FspBI	CTAG	1 cut(s)	329
GluI	GCNGC	1 cut(s)	534
GsuI	CTGGAG	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	2 cut(s)	84, 512
Hin1II	CATG	2 cut(s)	132, 706
HincII	GTYRAC	2 cut(s)	96, 646
HindII	GTYRAC	2 cut(s)	96, 646
HindIII	AAGCTT	2 cut(s)	226, 611
HinfI	GANTC	4 cut(s)	59, 563, 633, 676
HpaI	GTTAAC	1 cut(s)	96
HpaII	CCGG	2 cut(s)	84, 512
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	2 cut(s)	96, 646
Hpy188I	TCNGA	2 cut(s)	118, 217
Hpy188III	TCNNGA	4 cut(s)	158, 312, 419, 539
Hpy8I	GTNNAC	2 cut(s)	96, 646
Hpy99I	CGWCG	2 cut(s)	284, 655
HpyAV	CCTTC	2 cut(s)	17, 344
HpyCH4III	ACNGT	3 cut(s)	13, 93, 494
HpyCH4V	TGCA	3 cut(s)	386, 533, 689
HpyF3I	CTNAG	2 cut(s)	30, 466
Hsp92II	CATG	2 cut(s)	132, 706
Ksp22I	TGATCA	1 cut(s)	622
KspAI	GTTAAC	1 cut(s)	96
Kzo9I	GATC	5 cut(s)	250, 428, 486, 622, 782
LmnI	GCTCC	1 cut(s)	26
Lsp1109I	GCAGC	1 cut(s)	545
LweI	GCATC	2 cut(s)	141, 716
MaeI	CTAG	1 cut(s)	329
MaeIII	GTNAC	1 cut(s)	378
MalI	GATC	5 cut(s)	252, 430, 488, 624, 784
MboI	GATC	5 cut(s)	250, 428, 486, 622, 782
MboII	GAAGA	5 cut(s)	46, 230, 307, 604, 671
MfeI	CAATTG	1 cut(s)	573
MflI	RGATCY	1 cut(s)	486
MlsI	TGGCCA	1 cut(s)	239
MluCI	AATT	6 cut(s)	307, 502, 515, 573, 638, 715
MluNI	TGGCCA	1 cut(s)	239
MlyI	GAGTC	1 cut(s)	627
MmeI	TCCRAC	2 cut(s)	406, 707
MnlI	CCTC	1 cut(s)	415
Mox20I	TGGCCA	1 cut(s)	239
MscI	TGGCCA	1 cut(s)	239
MseI	TTAA	5 cut(s)	95, 141, 174, 476, 497
Msp20I	TGGCCA	1 cut(s)	239
MspI	CCGG	2 cut(s)	84, 512
MspR9I	CCNGG	3 cut(s)	84, 360, 747
MunI	CAATTG	1 cut(s)	573
MvaI	CCWGG	2 cut(s)	360, 747
NciI	CCSGG	1 cut(s)	84
NdeII	GATC	5 cut(s)	250, 428, 486, 622, 782
NlaIII	CATG	2 cut(s)	132, 706
NmuCI	GTSAC	1 cut(s)	378
NspI	RCATGY	1 cut(s)	132
PfeI	GAWTC	3 cut(s)	59, 563, 676
PfoI	TCCNGGA	1 cut(s)	358
PkrI	GCNGC	1 cut(s)	535
PleI	GAGTC	1 cut(s)	627
PpsI	GAGTC	1 cut(s)	627
Psp6I	CCWGG	2 cut(s)	358, 745
PspGI	CCWGG	2 cut(s)	358, 745
PsuI	RGATCY	1 cut(s)	486
RsaI	GTAC	1 cut(s)	587
RsaNI	GTAC	1 cut(s)	586
SaqAI	TTAA	5 cut(s)	95, 141, 174, 476, 497
SatI	GCNGC	1 cut(s)	534
Sau3AI	GATC	5 cut(s)	250, 428, 486, 622, 782
SchI	GAGTC	1 cut(s)	627
ScrFI	CCNGG	3 cut(s)	84, 360, 747
SfaNI	GCATC	2 cut(s)	141, 716
SmlI	CTYRAG	2 cut(s)	417, 537
SmoI	CTYRAG	2 cut(s)	417, 537
Sse9I	AATT	6 cut(s)	307, 502, 515, 573, 638, 715
SsiI	CCGC	2 cut(s)	72, 103
SspMI	CTAG	1 cut(s)	329
StyD4I	CCNGG	3 cut(s)	82, 358, 745
StyI	CCWWGG	1 cut(s)	602
TaaI	ACNGT	3 cut(s)	13, 93, 494
TaqI	TCGA	3 cut(s)	279, 431, 458
TaqII	GACCGA	1 cut(s)	611
TasI	AATT	6 cut(s)	307, 502, 515, 573, 638, 715
TfiI	GAWTC	3 cut(s)	59, 563, 676
Tru1I	TTAA	5 cut(s)	95, 141, 174, 476, 497
Tru9I	TTAA	5 cut(s)	95, 141, 174, 476, 497
TscAI	CASTG	1 cut(s)	173
TseFI	GTSAC	1 cut(s)	378
TseI	GCWGC	1 cut(s)	533
Tsp45I	GTSAC	1 cut(s)	378
TspDTI	ATGAA	4 cut(s)	250, 308, 449, 671
TspGWI	ACGGA	1 cut(s)	556
TspRI	CASTG	1 cut(s)	173
XapI	RAATTY	4 cut(s)	307, 502, 638, 715
XceI	RCATGY	1 cut(s)	132
XspI	CTAG	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.