Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007200

Physical Location & Seq

Genomic Coordinates Forward (+)

38301548 .. 38304744

Gene Structure 3197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G456900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCTTGGTGGGAAGGCTTCGATGAAATCCGTCTTCTCATCGCAGCAGATACTGCTGAAACTGGAAACGACGTCGGACAATTGCTTTCGCTTCGGCATCCCAAGTCCGGAAACTCAATGTGCTGTCTTTTAGTTAATGGAGTTCTTCAGGAGCTTAATTGGTTCAAGCAATCCTACACTTCTTGGTTTCTGGGTGACTATGTTGCTGAAGATGGTGGGTTATATACTGCCACTCCAGTTGATCCTGTTTTCATTTTGTTGCCCATTTTTGAAGAAGCTAGAATGAAGAAGGAGGACGATCCGGGGAAGTTCAGGCTTGTAGATGAGATAATCTTTGTTGAAGGCTATCCCGGATATCAGAAACTATTGTCCATTGCGGAGAATTTTATGCAAGTAGTTTGTGAAATCAAAGAAATTGGATCCTCAAAATTTTTCAGGCTTGATGATTCCAAAGTTCTAGCTTGGATGTACCATAAGGTATGTCAGCTAAAACAGACACTATCCACCTTGGACAATAATTATGCTGCAAGGGAAGAGAAAGATAGATTAATTGATGCAGTTTCAATATTAGGGGAATACTTGGATGAGCCCTGGCTGAAGCTTTTGAGTGACCGTTTGAGGATAGACTTAACAGAGGCAACAAGAAAAATGTCAGATATCGAAATTCTCCCAACTGCCACAGAATGCAATGGCTCACAGGAAAAGAGTAAGAGTGACAATAAGACTACCAGAGCTGGAAGGCAAGCTAAGAAGCCCAAAGTGGAGACAGAATCACATAACATCAGAGAAATGTTTACTAGAGCTTCTTCAAGAAGGAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03030 map03030

Pfam Domains

Protein Families

RNase_H2-Ydr279

Protein Analysis

275

Amino Acids

31.39

Weight (kDa)

5.48

Isoelectric Point (pI)

44.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20325 AT4G20325
fragaria_vesca	FvH4_2g36540 FvH4_2g36540 FvH4_2g36540 FvH4_2g36540 FvH4_2g36540 FvH4_2g36540
malus_domestica	MD08G1125300.v1.1 MD15G1105100.v1.1
prunus_persica	Prupe.1G456900_v2.0.a1
pyrus_communis	pycom08g10420 pycom08g10430 pycom15g09540
rosa_chinensis	RchiOBHm_Chr6g0305311
rosa_laevigata	RLG00000010901
rosa_multiflora	Rmu_ssc0000148.1_g000002
rosa_roxburghii	Rroxscaffold_7G00162910
rosa_rugosa	Rorug06G0339500
rosa_samantha	Rh1CG439200 Rh6AG451100 Rh6BG450200 Rh6CG465400 Rh6DG451900
rosa_wichuraiana	Rw6G039320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	75
AccIII	TCCGGA	1 cut(s)	107
AciI	CCGC	1 cut(s)	377
AclWI	GGATC	4 cut(s)	236, 293, 414, 427
AcsI	RAATTY	3 cut(s)	382, 428, 663
AcuI	CTGAAG	3 cut(s)	131, 228, 617
AcyI	GRCGYC	1 cut(s)	72
AfaI	GTAC	1 cut(s)	470
AfiI	CCNNNNNNNGG	1 cut(s)	107
AgsI	TTSAA	5 cut(s)	166, 272, 341, 564, 810
AjnI	CCWGG	1 cut(s)	590
AluBI	AGCT	8 cut(s)	154, 278, 461, 487, 601, 734, 746, 803
AluI	AGCT	8 cut(s)	154, 278, 461, 487, 601, 734, 746, 803
Alw26I	GTCTC	1 cut(s)	758
AlwI	GGATC	4 cut(s)	236, 293, 414, 427
AlwNI	CAGNNNCTG	1 cut(s)	53
Aor13HI	TCCGGA	1 cut(s)	107
ApeKI	GCWGC	2 cut(s)	44, 524
ApoI	RAATTY	3 cut(s)	382, 428, 663
AseI	ATTAAT	1 cut(s)	548
AsuC2I	CCSGG	2 cut(s)	303, 351
AsuHPI	GGTGA	1 cut(s)	206
BamHI	GGATCC	1 cut(s)	419
BanII	GRGCYC	1 cut(s)	591
BbsI	GAAGAC	1 cut(s)	26
BbvI	GCAGC	2 cut(s)	56, 511
BccI	CCATC	1 cut(s)	206
BciT130I	CCWGG	1 cut(s)	592
BcnI	CCSGG	2 cut(s)	303, 351
BcoDI	GTCTC	1 cut(s)	758
BfaI	CTAG	3 cut(s)	279, 458, 798
BisI	GCNGC	2 cut(s)	45, 525
BlsI	GCNGC	2 cut(s)	46, 526
Bme1390I	CCNGG	3 cut(s)	303, 351, 592
BmiI	GGNNCC	1 cut(s)	421
BmrFI	CCNGG	3 cut(s)	303, 351, 592
BmsI	GCATC	2 cut(s)	106, 544
BpiI	GAAGAC	1 cut(s)	26
BpmI	CTGGAG	1 cut(s)	219
BpuMI	CCSGG	2 cut(s)	303, 351
BsaHI	GRCGYC	1 cut(s)	72
BsaJI	CCNNGG	3 cut(s)	302, 507, 590
BsaWI	WCCGGW	1 cut(s)	107
BsaXI	ACNNNNNCTCC	2 cut(s)	217, 247
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
Bse1I	ACTGG	2 cut(s)	67, 236
Bse3DI	GCAATG	2 cut(s)	372, 694
BseAI	TCCGGA	1 cut(s)	107
BseBI	CCWGG	1 cut(s)	592
BseDI	CCNNGG	3 cut(s)	302, 507, 590
BseGI	GGATG	3 cut(s)	97, 471, 589
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseMI	GCAATG	2 cut(s)	372, 694
BseNI	ACTGG	2 cut(s)	67, 236
BseXI	GCAGC	2 cut(s)	56, 511
BsiSI	CCGG	3 cut(s)	108, 302, 351
BslI	CCNNNNNNNGG	1 cut(s)	107
BsmAI	GTCTC	1 cut(s)	758
BsmI	GAATGC	1 cut(s)	689
Bsp1286I	GDGCHC	1 cut(s)	591
Bsp13I	TCCGGA	1 cut(s)	107
Bsp143I	GATC	3 cut(s)	241, 298, 419
BspACI	CCGC	1 cut(s)	377
BspEI	TCCGGA	1 cut(s)	107
BspLI	GGNNCC	1 cut(s)	421
BspPI	GGATC	4 cut(s)	236, 293, 414, 427
BsrDI	GCAATG	2 cut(s)	372, 694
BsrI	ACTGG	2 cut(s)	67, 236
BssECI	CCNNGG	3 cut(s)	302, 507, 590
BssMI	GATC	3 cut(s)	241, 298, 419
BssNI	GRCGYC	1 cut(s)	72
BssT1I	CCWWGG	1 cut(s)	507
Bst2UI	CCWGG	1 cut(s)	592
Bst4CI	ACNGT	1 cut(s)	614
Bst6I	CTCTTC	1 cut(s)	528
BstACI	GRCGYC	1 cut(s)	72
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstC8I	GCNNGC	1 cut(s)	744
BstDEI	CTNAG	1 cut(s)	747
BstF5I	GGATG	3 cut(s)	97, 471, 589
BstKTI	GATC	3 cut(s)	244, 301, 422
BstMAI	GTCTC	1 cut(s)	758
BstMBI	GATC	3 cut(s)	241, 298, 419
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	1 cut(s)	592
BstSCI	CCNGG	3 cut(s)	301, 349, 590
BstV1I	GCAGC	2 cut(s)	56, 511
BstV2I	GAAGAC	1 cut(s)	26
BstX2I	RGATCY	1 cut(s)	419
BstYI	RGATCY	1 cut(s)	419
BtgZI	GCGATG	1 cut(s)	25
BtsCI	GGATG	3 cut(s)	97, 471, 589
Cac8I	GCNNGC	1 cut(s)	744
CaiI	CAGNNNCTG	1 cut(s)	53
Csp6I	GTAC	1 cut(s)	469
CspCI	CAANNNNNGTGG	2 cut(s)	220, 255
CviQI	GTAC	1 cut(s)	469
DdeI	CTNAG	1 cut(s)	747
DpnI	GATC	3 cut(s)	243, 300, 421
DpnII	GATC	3 cut(s)	241, 298, 419
Eam1104I	CTCTTC	1 cut(s)	528
EarI	CTCTTC	1 cut(s)	528
Eco130I	CCWWGG	1 cut(s)	507
Eco24I	GRGCYC	1 cut(s)	591
Eco32I	GATATC	2 cut(s)	356, 658
Eco57I	CTGAAG	3 cut(s)	131, 228, 617
EcoRII	CCWGG	1 cut(s)	590
EcoRV	GATATC	2 cut(s)	356, 658
EcoT14I	CCWWGG	1 cut(s)	507
EcoT38I	GRGCYC	1 cut(s)	591
ErhI	CCWWGG	1 cut(s)	507
FaiI	YATR	8 cut(s)	201, 223, 225, 389, 474, 481, 522, 777
Fnu4HI	GCNGC	2 cut(s)	45, 525
FokI	GGATG	3 cut(s)	84, 478, 596
FriOI	GRGCYC	1 cut(s)	591
Fsp4HI	GCNGC	2 cut(s)	45, 525
FspBI	CTAG	3 cut(s)	279, 458, 798
GluI	GCNGC	2 cut(s)	45, 525
GsuI	CTGGAG	1 cut(s)	219
HapII	CCGG	3 cut(s)	108, 302, 351
Hin1I	GRCGYC	1 cut(s)	72
HindIII	AAGCTT	1 cut(s)	599
HinfI	GANTC	2 cut(s)	446, 770
HpaII	CCGG	3 cut(s)	108, 302, 351
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	1 cut(s)	795
Hpy188I	TCNGA	4 cut(s)	77, 360, 655, 785
Hpy188III	TCNNGA	3 cut(s)	108, 149, 810
Hpy8I	GTNNAC	1 cut(s)	795
Hpy99I	CGWCG	2 cut(s)	74, 77
HpyAV	CCTTC	5 cut(s)	8, 283, 335, 732, 807
HpyCH4III	ACNGT	1 cut(s)	614
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	4 cut(s)	391, 527, 557, 687
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	1 cut(s)	747
HpySE526I	ACGT	1 cut(s)	72
Hsp92I	GRCGYC	1 cut(s)	72
Kpn2I	TCCGGA	1 cut(s)	107
Kzo9I	GATC	3 cut(s)	241, 298, 419
LmnI	GCTCC	1 cut(s)	151
Lsp1109I	GCAGC	2 cut(s)	56, 511
LweI	GCATC	2 cut(s)	106, 544
MaeI	CTAG	3 cut(s)	279, 458, 798
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	3 cut(s)	194, 608, 713
MalI	GATC	3 cut(s)	243, 300, 421
MboI	GATC	3 cut(s)	241, 298, 419
MboII	GAAGA	7 cut(s)	26, 137, 221, 284, 298, 545, 798
MfeI	CAATTG	1 cut(s)	80
MflI	RGATCY	1 cut(s)	419
MhlI	GDGCHC	1 cut(s)	591
MluCI	AATT	8 cut(s)	80, 157, 382, 414, 428, 517, 549, 663
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	4 cut(s)	286, 433, 612, 628
MroI	TCCGGA	1 cut(s)	107
MseI	TTAA	4 cut(s)	135, 156, 548, 629
MspI	CCGG	3 cut(s)	108, 302, 351
MspR9I	CCNGG	3 cut(s)	303, 351, 592
MunI	CAATTG	1 cut(s)	80
Mva1269I	GAATGC	1 cut(s)	689
MvaI	CCWGG	1 cut(s)	592
MwoI	GCNNNNNNNGC	1 cut(s)	53
NciI	CCSGG	2 cut(s)	303, 351
NdeII	GATC	3 cut(s)	241, 298, 419
NlaIV	GGNNCC	1 cut(s)	421
NmuCI	GTSAC	3 cut(s)	194, 608, 713
PctI	GAATGC	1 cut(s)	689
PfeI	GAWTC	2 cut(s)	446, 770
PfoI	TCCNGGA	1 cut(s)	349
PkrI	GCNGC	2 cut(s)	46, 526
PshBI	ATTAAT	1 cut(s)	548
Psp6I	CCWGG	1 cut(s)	590
PspGI	CCWGG	1 cut(s)	590
PspN4I	GGNNCC	1 cut(s)	421
PstNI	CAGNNNCTG	1 cut(s)	53
PsuI	RGATCY	1 cut(s)	419
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
SaqAI	TTAA	4 cut(s)	135, 156, 548, 629
SatI	GCNGC	2 cut(s)	45, 525
Sau3AI	GATC	3 cut(s)	241, 298, 419
ScrFI	CCNGG	3 cut(s)	303, 351, 592
SduI	GDGCHC	1 cut(s)	591
SfaNI	GCATC	2 cut(s)	106, 544
Sse9I	AATT	8 cut(s)	80, 157, 382, 414, 428, 517, 549, 663
SsiI	CCGC	1 cut(s)	377
SspI	AATATT	1 cut(s)	567
SspMI	CTAG	3 cut(s)	279, 458, 798
StyD4I	CCNGG	3 cut(s)	301, 349, 590
StyI	CCWWGG	1 cut(s)	507
TaaI	ACNGT	1 cut(s)	614
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	2 cut(s)	21, 660
TasI	AATT	8 cut(s)	80, 157, 382, 414, 428, 517, 549, 663
TfiI	GAWTC	2 cut(s)	446, 770
Tru1I	TTAA	4 cut(s)	135, 156, 548, 629
Tru9I	TTAA	4 cut(s)	135, 156, 548, 629
TseFI	GTSAC	3 cut(s)	194, 608, 713
TseI	GCWGC	2 cut(s)	44, 524
Tsp45I	GTSAC	3 cut(s)	194, 608, 713
TspDTI	ATGAA	3 cut(s)	39, 241, 299
TspGWI	ACGGA	1 cut(s)	20
VspI	ATTAAT	1 cut(s)	548
XapI	RAATTY	3 cut(s)	382, 428, 663
XspI	CTAG	3 cut(s)	279, 458, 798
ZraI	GACGTC	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.