Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000148.1

Orthogroup ID

OG0007200

Physical Location & Seq

Genomic Coordinates Reverse (-)

7625 .. 9427

Gene Structure 1803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000148.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atgtgctgtgttttagttgatgggatgctccaggaacttaattggttcaggcagtcctacagttcttggtttcttggagactatgtttctgaggatggtgggatatataccgccactcgtgttgatcctgttttcattttgctgcccattttcgaggaagctagaatgaagaaaggggacgatcctgggaagtacaggccattggatgagataatcttcgttgatggctatcccggatatcagcaactactgtccattgctgaggactctatgcaagtagtttgtgaaatcaaagaaattgattcctccaaatattttaggcttgacgactccaaggttctggcttggttgtaccacaaggcatgccagctaaaacagacactatccacgttggacagtaattatgctgcaagggaagaaaagcatagattggctgatgcagtttcaatattaggggaatacctgaaggatgatccctggttgaagcttttgtgtgaccgtttgaggatagatttaccagaggcaccaaaaaaagcaccagatgctgaaactctcccaactgccaacgaaagtagcccagggatttggaatggttcacaggaaaagagcaagagtgacaataaggttactaccagagctgctggaaggcaagctaaaaagatcaaactggagacgggatcacataatatcagagacatgttcactagggcctcatcaagtaagaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03030 map03030

Pfam Domains

Protein Families

RNase_H2-Ydr279

Protein Analysis

242

Amino Acids

27.48

Weight (kDa)

5.75

Isoelectric Point (pI)

43.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20325 AT4G20325
fragaria_vesca	FvH4_2g36540 FvH4_2g36540 FvH4_2g36540 FvH4_2g36540 FvH4_2g36540 FvH4_2g36540
malus_domestica	MD08G1125300.v1.1 MD15G1105100.v1.1
prunus_persica	Prupe.1G456900_v2.0.a1
pyrus_communis	pycom08g10420 pycom08g10430 pycom15g09540
rosa_chinensis	RchiOBHm_Chr6g0305311
rosa_laevigata	RLG00000010901
rosa_multiflora	Rmu_ssc0000148.1_g000002
rosa_roxburghii	Rroxscaffold_7G00162910
rosa_rugosa	Rorug06G0339500
rosa_samantha	Rh1CG439200 Rh6AG451100 Rh6BG450200 Rh6CG465400 Rh6DG451900
rosa_wichuraiana	Rw6G039320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	523
AciI	CCGC	1 cut(s)	111
AclWI	GGATC	4 cut(s)	119, 176, 467, 685
AcuI	CTGAAG	1 cut(s)	485
AfaI	GTAC	2 cut(s)	194, 353
AflIII	ACRYGT	1 cut(s)	696
AgsI	TTSAA	2 cut(s)	447, 484
AjnI	CCWGG	4 cut(s)	30, 184, 476, 577
AluBI	AGCT	5 cut(s)	161, 370, 487, 638, 653
AluI	AGCT	5 cut(s)	161, 370, 487, 638, 653
Alw26I	GTCTC	3 cut(s)	72, 665, 687
AlwI	GGATC	4 cut(s)	119, 176, 467, 685
AlwNI	CAGNNNCTG	1 cut(s)	545
AoxI	GGCC	2 cut(s)	197, 708
ApeKI	GCWGC	3 cut(s)	142, 407, 638
AspS9I	GGNCC	1 cut(s)	708
AsuC2I	CCSGG	1 cut(s)	234
BanI	GGYRCC	1 cut(s)	523
BauI	CACGAG	1 cut(s)	117
BbvCI	CCTCAGC	1 cut(s)	261
BbvI	GCAGC	3 cut(s)	129, 394, 625
BccI	CCATC	3 cut(s)	14, 89, 218
BciT130I	CCWGG	4 cut(s)	32, 186, 478, 579
BcnI	CCSGG	1 cut(s)	234
BcoDI	GTCTC	3 cut(s)	72, 665, 687
BfaI	CTAG	2 cut(s)	162, 705
BfmI	CTRYAG	1 cut(s)	58
BisI	GCNGC	3 cut(s)	143, 408, 639
BlsI	GCNGC	3 cut(s)	144, 409, 640
Bme1390I	CCNGG	5 cut(s)	32, 186, 234, 478, 579
BmgT120I	GGNCC	1 cut(s)	708
BmiI	GGNNCC	1 cut(s)	525
BmrFI	CCNGG	5 cut(s)	32, 186, 234, 478, 579
BmsI	GCATC	3 cut(s)	15, 427, 532
BpmI	CTGGAG	2 cut(s)	14, 689
Bpu10I	CCTNAGC	1 cut(s)	261
BpuMI	CCSGG	1 cut(s)	234
BsaBI	GATNNNNATC	1 cut(s)	228
BsaJI	CCNNGG	5 cut(s)	185, 333, 476, 577, 578
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bse1I	ACTGG	1 cut(s)	672
Bse3DI	GCAATG	1 cut(s)	255
Bse8I	GATNNNNATC	1 cut(s)	228
BseBI	CCWGG	4 cut(s)	32, 186, 478, 579
BseDI	CCNNGG	5 cut(s)	185, 333, 476, 577, 578
BseGI	GGATG	4 cut(s)	30, 100, 211, 475
BseJI	GATNNNNATC	1 cut(s)	228
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	2 cut(s)	81, 252
BseNI	ACTGG	1 cut(s)	672
BseXI	GCAGC	3 cut(s)	129, 394, 625
BshFI	GGCC	2 cut(s)	199, 710
BshNI	GGYRCC	1 cut(s)	523
BsiSI	CCGG	1 cut(s)	234
BslFI	GGGAC	1 cut(s)	191
BsmAI	GTCTC	3 cut(s)	72, 665, 687
BsmBI	CGTCTC	1 cut(s)	665
BsmFI	GGGAC	1 cut(s)	191
BsnI	GGCC	2 cut(s)	199, 710
Bsp143I	GATC	5 cut(s)	124, 181, 472, 660, 677
BspACI	CCGC	1 cut(s)	111
BspANI	GGCC	2 cut(s)	199, 710
BspCNI	CTCAG	2 cut(s)	82, 253
BspLI	GGNNCC	1 cut(s)	525
BspPI	GGATC	4 cut(s)	119, 176, 467, 685
BspT107I	GGYRCC	1 cut(s)	523
BsrDI	GCAATG	1 cut(s)	255
BsrI	ACTGG	1 cut(s)	672
BssECI	CCNNGG	5 cut(s)	185, 333, 476, 577, 578
BssMI	GATC	5 cut(s)	124, 181, 472, 660, 677
BssSI	CACGAG	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	333
Bst2BI	CACGAG	1 cut(s)	117
Bst2UI	CCWGG	4 cut(s)	32, 186, 478, 579
Bst4CI	ACNGT	4 cut(s)	62, 252, 398, 500
BstAPI	GCANNNNNTGC	1 cut(s)	542
BstC8I	GCNNGC	3 cut(s)	364, 368, 651
BstDEI	CTNAG	2 cut(s)	90, 261
BstF5I	GGATG	4 cut(s)	30, 100, 211, 475
BstKTI	GATC	5 cut(s)	127, 184, 475, 663, 680
BstMAI	GTCTC	3 cut(s)	72, 665, 687
BstMBI	GATC	5 cut(s)	124, 181, 472, 660, 677
BstMWI	GCNNNNNNNGC	1 cut(s)	542
BstNI	CCWGG	4 cut(s)	32, 186, 478, 579
BstNSI	RCATGY	2 cut(s)	366, 700
BstSCI	CCNGG	5 cut(s)	30, 184, 232, 476, 577
BstSFI	CTRYAG	1 cut(s)	58
BstV1I	GCAGC	3 cut(s)	129, 394, 625
BstXI	CCANNNNNNTGG	2 cut(s)	340, 585
BsuRI	GGCC	2 cut(s)	199, 710
BtsCI	GGATG	4 cut(s)	30, 100, 211, 475
Cac8I	GCNNGC	3 cut(s)	364, 368, 651
CaiI	CAGNNNCTG	1 cut(s)	545
Cfr13I	GGNCC	1 cut(s)	708
Csp6I	GTAC	2 cut(s)	193, 352
CspCI	CAANNNNNGTGG	2 cut(s)	103, 138
CviAII	CATG	2 cut(s)	363, 697
CviQI	GTAC	2 cut(s)	193, 352
DdeI	CTNAG	2 cut(s)	90, 261
DpnI	GATC	5 cut(s)	126, 183, 474, 662, 679
DpnII	GATC	5 cut(s)	124, 181, 472, 660, 677
Eco130I	CCWWGG	1 cut(s)	333
Eco32I	GATATC	1 cut(s)	239
Eco57I	CTGAAG	1 cut(s)	485
EcoO109I	RGGNCCY	1 cut(s)	708
EcoRII	CCWGG	4 cut(s)	30, 184, 476, 577
EcoRV	GATATC	1 cut(s)	239
EcoT14I	CCWWGG	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	333
Esp3I	CGTCTC	1 cut(s)	665
FaeI	CATG	2 cut(s)	366, 700
FaiI	YATR	9 cut(s)	84, 106, 108, 272, 364, 405, 426, 684, 698
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	2 cut(s)	362, 696
Fnu4HI	GCNGC	3 cut(s)	143, 408, 639
FokI	GGATG	4 cut(s)	37, 107, 218, 482
Fsp4HI	GCNGC	3 cut(s)	143, 408, 639
FspBI	CTAG	2 cut(s)	162, 705
GluI	GCNGC	3 cut(s)	143, 408, 639
GsuI	CTGGAG	2 cut(s)	14, 689
HaeIII	GGCC	2 cut(s)	199, 710
HapII	CCGG	1 cut(s)	234
Hin1II	CATG	2 cut(s)	366, 700
HindIII	AAGCTT	1 cut(s)	485
HinfI	GANTC	3 cut(s)	266, 302, 329
HpaII	CCGG	1 cut(s)	234
Hpy166II	GTNNAC	2 cut(s)	596, 702
Hpy188I	TCNGA	2 cut(s)	91, 692
Hpy8I	GTNNAC	2 cut(s)	596, 702
HpyAV	CCTTC	2 cut(s)	460, 639
HpyCH4III	ACNGT	4 cut(s)	62, 252, 398, 500
HpyCH4IV	ACGT	1 cut(s)	389
HpyCH4V	TGCA	3 cut(s)	274, 410, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	542
HpyF3I	CTNAG	2 cut(s)	90, 261
HpySE526I	ACGT	1 cut(s)	389
Hsp92II	CATG	2 cut(s)	366, 700
Kzo9I	GATC	5 cut(s)	124, 181, 472, 660, 677
LmnI	GCTCC	1 cut(s)	33
Lsp1109I	GCAGC	3 cut(s)	129, 394, 625
LweI	GCATC	3 cut(s)	15, 427, 532
MaeI	CTAG	2 cut(s)	162, 705
MaeII	ACGT	1 cut(s)	389
MaeIII	GTNAC	3 cut(s)	494, 614, 625
MalI	GATC	5 cut(s)	126, 183, 474, 662, 679
MboI	GATC	5 cut(s)	124, 181, 472, 660, 677
MboII	GAAGA	3 cut(s)	181, 208, 428
MluCI	AATT	3 cut(s)	40, 297, 400
MlyI	GAGTC	2 cut(s)	260, 323
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	7 cut(s)	85, 148, 256, 316, 498, 514, 721
MseI	TTAA	1 cut(s)	39
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	5 cut(s)	32, 186, 234, 478, 579
MvaI	CCWGG	4 cut(s)	32, 186, 478, 579
MwoI	GCNNNNNNNGC	1 cut(s)	542
NciI	CCSGG	1 cut(s)	234
NdeII	GATC	5 cut(s)	124, 181, 472, 660, 677
NlaIII	CATG	2 cut(s)	366, 700
NlaIV	GGNNCC	1 cut(s)	525
NmuCI	GTSAC	2 cut(s)	494, 614
NspI	RCATGY	2 cut(s)	366, 700
PaeI	GCATGC	1 cut(s)	366
PasI	CCCWGGG	1 cut(s)	578
PciI	ACATGT	1 cut(s)	696
PfeI	GAWTC	1 cut(s)	302
PfoI	TCCNGGA	2 cut(s)	30, 232
PkrI	GCNGC	3 cut(s)	144, 409, 640
PleI	GAGTC	2 cut(s)	260, 323
PpsI	GAGTC	2 cut(s)	260, 323
PscI	ACATGT	1 cut(s)	696
Psp6I	CCWGG	4 cut(s)	30, 184, 476, 577
PspGI	CCWGG	4 cut(s)	30, 184, 476, 577
PspN4I	GGNNCC	1 cut(s)	525
PspPI	GGNCC	1 cut(s)	708
PstNI	CAGNNNCTG	1 cut(s)	545
RsaI	GTAC	2 cut(s)	194, 353
RsaNI	GTAC	2 cut(s)	193, 352
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	3 cut(s)	143, 408, 639
Sau3AI	GATC	5 cut(s)	124, 181, 472, 660, 677
Sau96I	GGNCC	1 cut(s)	708
SchI	GAGTC	2 cut(s)	260, 323
ScrFI	CCNGG	5 cut(s)	32, 186, 234, 478, 579
SetI	ASST	9 cut(s)	163, 339, 372, 392, 465, 489, 627, 640, 655
SfaNI	GCATC	3 cut(s)	15, 427, 532
SfcI	CTRYAG	1 cut(s)	58
SphI	GCATGC	1 cut(s)	366
Sse9I	AATT	3 cut(s)	40, 297, 400
SsiI	CCGC	1 cut(s)	111
SspI	AATATT	2 cut(s)	314, 450
SspMI	CTAG	2 cut(s)	162, 705
StyD4I	CCNGG	5 cut(s)	30, 184, 232, 476, 577
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	4 cut(s)	62, 252, 398, 500
TaiI	ACGT	1 cut(s)	392
TaqI	TCGA	1 cut(s)	153
TasI	AATT	3 cut(s)	40, 297, 400
TatI	WGTACW	1 cut(s)	192
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TseFI	GTSAC	2 cut(s)	494, 614
TseI	GCWGC	3 cut(s)	142, 407, 638
Tsp45I	GTSAC	2 cut(s)	494, 614
TspDTI	ATGAA	2 cut(s)	124, 182
XceI	RCATGY	2 cut(s)	366, 700
XspI	CTAG	2 cut(s)	162, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.