Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007200

Physical Location & Seq

Genomic Coordinates Forward (+)

26733412 .. 26735891

Gene Structure 2480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g36540.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCTTGGTGCCAAGGTTTCGACGAAACCCGTCTTCTCATCGCCGCCGATCCTCCCGCAACCGGAGACGGCGCCGGAAAAATGATTTCGCTCCGACATCCGAAGTCCGGAAACACAATGTGCTGTCTTTTAGTGGATGGTATGCTCCAGGAGCTTAACTGGTTCAGGCAGTCCTACAGTTCTTGGTTTCTTGGAGACTATGTTTCCGAGGATGGTGGGTTATACACCGCCACTCGACTTGATCCTGTTTTTGTTTTGTTGCCCATTTTCGAGGAAGCTAGAATGAAGAAGAGGGATGATCCTGGCAAGTTCAGGCCGTTGGATGAGATAATCTTTGTTGATGGCTATCCCGCGTATCAGCACCTATTGTCCATTGCAGAGGTTTCTATGCAAGTAGTTTGTGATATCAAAGAAATTGATTCCACCAAATATTTTAGGCTTGATGACTCCAAGGTTCTGGCTTGGCTGTACCACAAGGCATGTCAGCTGAAAGAGACGCTATCCACGTTGGACAGTAATTATGCTGCAAGGGAAGATAAACAGAGATTGACTGATGCGGTTTCAATCTTAGGGGAATACCTGAAGGATGAGCCCTGGTTGAAGCTTTTGTGCGACCGTTTGAGGATAGATTTACCAGAGGCACCGAAAAAAGCACCAGACACTGAAACTCTCCCAACTGCGTACGAAAGTAGCCCAGGGATATGGAATGGCTCACAGGAAAAGAGCAAAAGTGACAATAAGGTCACTACCAGAGCAGCTGGAAGGCAAGCTAAAAAGATCAAACCGGAGACGGAATCACATAACATCAGAGACATGTTCACGAGGGCCTCATCAAGAAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03030 map03030

Pfam Domains

Protein Families

RNase_H2-Ydr279

Protein Analysis

282

Amino Acids

31.91

Weight (kDa)

6.16

Isoelectric Point (pI)

45.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ydr279_N	PF17745	27 - 81	3.4e-06	Ydr279p protein triple barrel domain
RNase_H2-Ydr279	PF09468	84 - 167	4e-11	Ydr279p protein family (RNase H2 complex component) wHTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20325 AT4G20325
fragaria_vesca	FvH4_2g36540 FvH4_2g36540 FvH4_2g36540 FvH4_2g36540 FvH4_2g36540 FvH4_2g36540
malus_domestica	MD08G1125300.v1.1 MD15G1105100.v1.1
prunus_persica	Prupe.1G456900_v2.0.a1
pyrus_communis	pycom08g10420 pycom08g10430 pycom15g09540
rosa_chinensis	RchiOBHm_Chr6g0305311
rosa_laevigata	RLG00000010901
rosa_multiflora	Rmu_ssc0000148.1_g000002
rosa_roxburghii	Rroxscaffold_7G00162910
rosa_rugosa	Rorug06G0339500
rosa_samantha	Rh1CG439200 Rh6AG451100 Rh6BG450200 Rh6CG465400 Rh6DG451900
rosa_wichuraiana	Rw6G039320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	740
AccB1I	GGYRCC	3 cut(s)	9, 71, 640
AccII	CGCG	1 cut(s)	353
AccIII	TCCGGA	1 cut(s)	107
AciI	CCGC	5 cut(s)	45, 57, 228, 351, 557
AclWI	GGATC	3 cut(s)	44, 236, 293
AcuI	CTGAAG	1 cut(s)	602
AcyI	GRCGYC	1 cut(s)	72
AdeI	CACNNNGTG	1 cut(s)	120
AfaI	GTAC	2 cut(s)	470, 683
AfiI	CCNNNNNNNGG	2 cut(s)	62, 107
AflIII	ACRYGT	1 cut(s)	813
AgsI	TTSAA	2 cut(s)	564, 601
AjnI	CCWGG	4 cut(s)	147, 301, 593, 694
AluBI	AGCT	6 cut(s)	154, 278, 487, 604, 758, 770
AluI	AGCT	6 cut(s)	154, 278, 487, 604, 758, 770
Alw26I	GTCTC	5 cut(s)	60, 189, 488, 782, 804
AlwI	GGATC	3 cut(s)	44, 236, 293
AlwNI	CAGNNNCTG	1 cut(s)	662
Aor13HI	TCCGGA	1 cut(s)	107
AoxI	GGCC	2 cut(s)	314, 825
ApeKI	GCWGC	2 cut(s)	524, 755
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	825
BanI	GGYRCC	3 cut(s)	9, 71, 640
BanII	GRGCYC	1 cut(s)	594
BauI	CACGAG	1 cut(s)	820
BbsI	GAAGAC	1 cut(s)	26
BbvI	GCAGC	2 cut(s)	511, 767
BccI	CCATC	3 cut(s)	131, 206, 335
BceAI	ACGGC	2 cut(s)	85, 301
BciT130I	CCWGG	4 cut(s)	149, 303, 595, 696
BcoDI	GTCTC	5 cut(s)	60, 189, 488, 782, 804
BfaI	CTAG	1 cut(s)	279
BfmI	CTRYAG	1 cut(s)	175
BfoI	RGCGCY	1 cut(s)	75
BisI	GCNGC	3 cut(s)	45, 525, 756
BlsI	GCNGC	3 cut(s)	46, 526, 757
Bme1390I	CCNGG	4 cut(s)	149, 303, 595, 696
BmgT120I	GGNCC	1 cut(s)	825
BmiI	GGNNCC	3 cut(s)	11, 73, 642
BmrFI	CCNGG	4 cut(s)	149, 303, 595, 696
BmsI	GCATC	1 cut(s)	544
BpiI	GAAGAC	1 cut(s)	26
BpmI	CTGGAG	1 cut(s)	131
BsaBI	GATNNNNATC	1 cut(s)	345
BsaHI	GRCGYC	1 cut(s)	72
BsaJI	CCNNGG	6 cut(s)	13, 207, 450, 593, 694, 695
BsaWI	WCCGGW	3 cut(s)	62, 107, 784
BsaXI	ACNNNNNCTCC	2 cut(s)	186, 216
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 107
Bse1I	ACTGG	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	372
Bse8I	GATNNNNATC	1 cut(s)	345
BseAI	TCCGGA	1 cut(s)	107
BseBI	CCWGG	4 cut(s)	149, 303, 595, 696
BseDI	CCNNGG	6 cut(s)	13, 207, 450, 593, 694, 695
BseGI	GGATG	6 cut(s)	97, 142, 217, 301, 328, 592
BseJI	GATNNNNATC	1 cut(s)	345
BseLI	CCNNNNNNNGG	2 cut(s)	62, 107
BseMI	GCAATG	1 cut(s)	372
BseNI	ACTGG	1 cut(s)	164
BseXI	GCAGC	2 cut(s)	511, 767
Bsh1236I	CGCG	1 cut(s)	353
Bsh1285I	CGRYCG	1 cut(s)	616
BshFI	GGCC	2 cut(s)	316, 827
BshNI	GGYRCC	3 cut(s)	9, 71, 640
BsiEI	CGRYCG	1 cut(s)	616
BsiSI	CCGG	4 cut(s)	63, 75, 108, 785
BsiWI	CGTACG	1 cut(s)	681
BslI	CCNNNNNNNGG	2 cut(s)	62, 107
BsmAI	GTCTC	5 cut(s)	60, 189, 488, 782, 804
BsmBI	CGTCTC	3 cut(s)	60, 488, 782
BsnI	GGCC	2 cut(s)	316, 827
Bsp1286I	GDGCHC	1 cut(s)	594
Bsp13I	TCCGGA	1 cut(s)	107
Bsp143I	GATC	4 cut(s)	49, 241, 298, 777
BspACI	CCGC	5 cut(s)	45, 57, 228, 351, 557
BspANI	GGCC	2 cut(s)	316, 827
BspEI	TCCGGA	1 cut(s)	107
BspFNI	CGCG	1 cut(s)	353
BspLI	GGNNCC	3 cut(s)	11, 73, 642
BspPI	GGATC	3 cut(s)	44, 236, 293
BspT107I	GGYRCC	3 cut(s)	9, 71, 640
BsrDI	GCAATG	1 cut(s)	372
BsrI	ACTGG	1 cut(s)	164
BssECI	CCNNGG	6 cut(s)	13, 207, 450, 593, 694, 695
BssMI	GATC	4 cut(s)	49, 241, 298, 777
BssNI	GRCGYC	1 cut(s)	72
BssSI	CACGAG	1 cut(s)	820
BssT1I	CCWWGG	2 cut(s)	13, 450
Bst2BI	CACGAG	1 cut(s)	820
Bst2UI	CCWGG	4 cut(s)	149, 303, 595, 696
Bst4CI	ACNGT	3 cut(s)	179, 515, 617
Bst6I	CTCTTC	1 cut(s)	284
BstACI	GRCGYC	1 cut(s)	72
BstC8I	GCNNGC	1 cut(s)	768
BstDEI	CTNAG	1 cut(s)	568
BstF5I	GGATG	6 cut(s)	97, 142, 217, 301, 328, 592
BstFNI	CGCG	1 cut(s)	353
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	4 cut(s)	52, 244, 301, 780
BstMAI	GTCTC	5 cut(s)	60, 189, 488, 782, 804
BstMBI	GATC	4 cut(s)	49, 241, 298, 777
BstMCI	CGRYCG	1 cut(s)	616
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstNI	CCWGG	4 cut(s)	149, 303, 595, 696
BstNSI	RCATGY	2 cut(s)	483, 817
BstSCI	CCNGG	4 cut(s)	147, 301, 593, 694
BstSFI	CTRYAG	1 cut(s)	175
BstUI	CGCG	1 cut(s)	353
BstV1I	GCAGC	2 cut(s)	511, 767
BstV2I	GAAGAC	1 cut(s)	26
BstXI	CCANNNNNNTGG	2 cut(s)	457, 702
BsuRI	GGCC	2 cut(s)	316, 827
BtgZI	GCGATG	1 cut(s)	25
BtsCI	GGATG	6 cut(s)	97, 142, 217, 301, 328, 592
BtsIMutI	CAGTG	1 cut(s)	660
Cac8I	GCNNGC	1 cut(s)	768
CaiI	CAGNNNCTG	1 cut(s)	662
CfoI	GCGC	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	825
CseI	GACGC	1 cut(s)	505
Csp6I	GTAC	2 cut(s)	469, 682
CspCI	CAANNNNNGTGG	2 cut(s)	220, 255
CviAII	CATG	2 cut(s)	480, 814
CviQI	GTAC	2 cut(s)	469, 682
DdeI	CTNAG	1 cut(s)	568
DinI	GGCGCC	1 cut(s)	73
DpnI	GATC	4 cut(s)	51, 243, 300, 779
DpnII	GATC	4 cut(s)	49, 241, 298, 777
DraIII	CACNNNGTG	1 cut(s)	120
DrdI	GACNNNNNNGTC	1 cut(s)	740
DseDI	GACNNNNNNGTC	1 cut(s)	740
Eam1104I	CTCTTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	284
Eco130I	CCWWGG	2 cut(s)	13, 450
Eco24I	GRGCYC	1 cut(s)	594
Eco32I	GATATC	1 cut(s)	406
Eco57I	CTGAAG	1 cut(s)	602
EcoO109I	RGGNCCY	1 cut(s)	825
EcoRII	CCWGG	4 cut(s)	147, 301, 593, 694
EcoRV	GATATC	1 cut(s)	406
EcoT14I	CCWWGG	2 cut(s)	13, 450
EcoT38I	GRGCYC	1 cut(s)	594
EgeI	GGCGCC	1 cut(s)	73
EheI	GGCGCC	1 cut(s)	73
ErhI	CCWWGG	2 cut(s)	13, 450
Esp3I	CGTCTC	3 cut(s)	60, 488, 782
FaeI	CATG	2 cut(s)	483, 817
FaiI	YATR	9 cut(s)	143, 201, 223, 389, 481, 522, 703, 801, 815
FatI	CATG	2 cut(s)	479, 813
FauI	CCCGC	2 cut(s)	64, 358
Fnu4HI	GCNGC	3 cut(s)	45, 525, 756
FokI	GGATG	6 cut(s)	84, 149, 224, 308, 335, 599
FriOI	GRGCYC	1 cut(s)	594
Fsp4HI	GCNGC	3 cut(s)	45, 525, 756
FspBI	CTAG	1 cut(s)	279
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	3 cut(s)	45, 525, 756
GsuI	CTGGAG	1 cut(s)	131
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	2 cut(s)	316, 827
HapII	CCGG	4 cut(s)	63, 75, 108, 785
HgaI	GACGC	1 cut(s)	505
HhaI	GCGC	1 cut(s)	74
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	2 cut(s)	483, 817
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HindIII	AAGCTT	1 cut(s)	602
HinfI	GANTC	3 cut(s)	419, 446, 794
HpaII	CCGG	4 cut(s)	63, 75, 108, 785
Hpy166II	GTNNAC	1 cut(s)	819
Hpy188I	TCNGA	4 cut(s)	95, 102, 208, 809
Hpy188III	TCNNGA	3 cut(s)	108, 820, 834
Hpy8I	GTNNAC	1 cut(s)	819
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	2 cut(s)	577, 756
HpyCH4III	ACNGT	3 cut(s)	179, 515, 617
HpyCH4IV	ACGT	1 cut(s)	506
HpyCH4V	TGCA	3 cut(s)	377, 391, 527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpyF3I	CTNAG	1 cut(s)	568
HpySE526I	ACGT	1 cut(s)	506
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	2 cut(s)	483, 817
HspAI	GCGC	1 cut(s)	72
KasI	GGCGCC	1 cut(s)	71
Kpn2I	TCCGGA	1 cut(s)	107
Kzo9I	GATC	4 cut(s)	49, 241, 298, 777
LmnI	GCTCC	3 cut(s)	96, 150, 151
Lsp1109I	GCAGC	2 cut(s)	511, 767
LweI	GCATC	1 cut(s)	544
MaeI	CTAG	1 cut(s)	279
MaeII	ACGT	1 cut(s)	506
MaeIII	GTNAC	2 cut(s)	731, 742
MalI	GATC	4 cut(s)	51, 243, 300, 779
MboI	GATC	4 cut(s)	49, 241, 298, 777
MboII	GAAGA	4 cut(s)	26, 298, 301, 545
MhlI	GDGCHC	1 cut(s)	594
MluCI	AATT	2 cut(s)	414, 517
Mly113I	GGCGCC	1 cut(s)	72
MlyI	GAGTC	1 cut(s)	440
MmeI	TCCRAC	3 cut(s)	118, 300, 489
MnlI	CCTC	9 cut(s)	63, 202, 265, 285, 373, 615, 631, 816, 838
MroI	TCCGGA	1 cut(s)	107
MseI	TTAA	1 cut(s)	156
MspA1I	CMGCKG	2 cut(s)	487, 758
MspI	CCGG	4 cut(s)	63, 75, 108, 785
MspR9I	CCNGG	4 cut(s)	149, 303, 595, 696
MvaI	CCWGG	4 cut(s)	149, 303, 595, 696
MvnI	CGCG	1 cut(s)	353
MwoI	GCNNNNNNNGC	1 cut(s)	151
NarI	GGCGCC	1 cut(s)	72
NdeII	GATC	4 cut(s)	49, 241, 298, 777
NlaIII	CATG	2 cut(s)	483, 817
NlaIV	GGNNCC	3 cut(s)	11, 73, 642
NmuCI	GTSAC	2 cut(s)	731, 742
NspI	RCATGY	2 cut(s)	483, 817
PasI	CCCWGGG	1 cut(s)	695
PciI	ACATGT	1 cut(s)	813
PcsI	WCGNNNNNNNCGW	1 cut(s)	503
PfeI	GAWTC	2 cut(s)	419, 794
Pfl23II	CGTACG	1 cut(s)	681
PfoI	TCCNGGA	1 cut(s)	147
PkrI	GCNGC	3 cut(s)	46, 526, 757
PleI	GAGTC	1 cut(s)	440
PluTI	GGCGCC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	440
PscI	ACATGT	1 cut(s)	813
Psp6I	CCWGG	4 cut(s)	147, 301, 593, 694
PspGI	CCWGG	4 cut(s)	147, 301, 593, 694
PspLI	CGTACG	1 cut(s)	681
PspN4I	GGNNCC	3 cut(s)	11, 73, 642
PspPI	GGNCC	1 cut(s)	825
PstNI	CAGNNNCTG	1 cut(s)	662
PvuII	CAGCTG	2 cut(s)	487, 758
RsaI	GTAC	2 cut(s)	470, 683
RsaNI	GTAC	2 cut(s)	469, 682
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	3 cut(s)	45, 525, 756
Sau3AI	GATC	4 cut(s)	49, 241, 298, 777
Sau96I	GGNCC	1 cut(s)	825
SchI	GAGTC	1 cut(s)	440
ScrFI	CCNGG	4 cut(s)	149, 303, 595, 696
SduI	GDGCHC	1 cut(s)	594
SfaNI	GCATC	1 cut(s)	544
SfcI	CTRYAG	1 cut(s)	175
SfoI	GGCGCC	1 cut(s)	73
Sse9I	AATT	2 cut(s)	414, 517
SsiI	CCGC	5 cut(s)	45, 57, 228, 351, 557
SspDI	GGCGCC	1 cut(s)	71
SspI	AATATT	1 cut(s)	431
SspMI	CTAG	1 cut(s)	279
StyD4I	CCNGG	4 cut(s)	147, 301, 593, 694
StyI	CCWWGG	2 cut(s)	13, 450
TaaI	ACNGT	3 cut(s)	179, 515, 617
TaiI	ACGT	1 cut(s)	509
TaqI	TCGA	3 cut(s)	21, 235, 270
TasI	AATT	2 cut(s)	414, 517
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	2 cut(s)	419, 794
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	1 cut(s)	667
TseFI	GTSAC	2 cut(s)	731, 742
TseI	GCWGC	2 cut(s)	524, 755
Tsp45I	GTSAC	2 cut(s)	731, 742
TspDTI	ATGAA	1 cut(s)	299
TspGWI	ACGGA	1 cut(s)	806
TspRI	CASTG	1 cut(s)	667
XceI	RCATGY	2 cut(s)	483, 817
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.