Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016541

Physical Location & Seq

Genomic Coordinates Reverse (-)

11286756 .. 11288513

Gene Structure 1758 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G21170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1758 bp

ATGGTTCTTATCCACACAAGTGTTGGATTCTTCAAACGATTCTCGACTTCAGCGACTCCATCAACATCCTCTGCTTCCGATTGGAAAACCCAACAGACTCTGTTCCGAGTAGCCACAGAAATATCTTCAATTCTCTTACAACGTCGTAACTGGATCACTCATCTCCAATATGTTAAATCCAAGCTCCCAAGGTCAACACTTACTTCACCTGTATTCCTCCAGATCCTCCGTGAAACTCGAAAATGCCCTAAAACCACTCTTGATTTCTTCGATTTTGCCAAAACCCATCTTCGGTTCGAGCCGGATCTTAAGTCTCATTGTCGAGTAATTGAAGTTGCTGCTGAATCAGGTCTCTTGGAACGAGCAGAAATGCTCTTGCGTCCTCTGGTTGAAACCAATTCTGTGTCTTTAGTTGTTGGAGAAATGCATCGGTGGTTTGAAGGTGAAGTTTCACTGTCTGTCTCGCTTAGCTTAGTGCTTGAGTATTATGCCTTAAAGGGTAGTCATCATAATGGTTTGGAAGTGTTTGGTTTTATGAGAAGATTGAGACTTTCACCTTCTCAAAGTGCTTATAACTCTCTTCTTGGTTCTCTGGTTAAAGAAAACCAGTTTAGAGTGGCTTTGTGTTTGTATAGTGCCATGGTTCGAAACGGGATTGTCTCTGATGAGTTGACTTGGGATTTGATTGCTCAGATTTTATGCGAACAAGGGAGATCCAAGAGTGTTTTTAAATTGATGGAAACAGGTGTTGAAAGCTGCAAGATTTACACTAATCTTGTGGAATGTTATAGCAGAAATGGAGAGTTTGATGCTGTGTTTAGTTTAATTCATGAGATGGATGACAAGAAACTAGAGTTGAGTTTTTGTTCTTACGGTTGCGTATTAGATGATGCATGTAGATTAGGAGATGCTGAGTTCATTGATAAGGTTCTCTGTTTGATGGTGGAGAAAAAGTTTGTTACTTTAGGTGATTCGGCTGTGAATGATAAAATCATTGAAAGACTTTGCGATATGGGGAAAACGTTTGCCTCTGAGATGCTTTTCCGTAAAGCCTGCAATGGTGAAACAGTGAGATTGTGGGATTCGACATACGGTTGTATGTTAAAAGCACTGTCAAGAAAGAAGAGAACAAAAGAAGCTGTTGATGTATATCGAATGATTTGTCGGAAAGGTATTACTGTACTTGATGAGAGTTGCTATATCGAATTCGCAAATGCCCTTTGCAGAGATGATAATAGCTCAGAGGAAGAAGAGGAATTGCTTGTAGATGTTATAAAGCGCGGTTTTGTTCCTTGTACACACAAGCTATCAGAAGTTTTAGCATCTATGTGTAGGAAAAGAAGATGGAAATCCGCAGAGAAGCTTCTTGATTCGGTTATGGAAATGGAGGTTTATTTCGATTCTTTTGCATGTGGATTGTTGATGGAACGTTACTGCAGAAGCGGGAAACTAGAGAAAGCACTGGTACTACATGAAAAGATAAAGAAAATGAAAGGAAGTTTAGATGTGAATGCTTATAACGCGGTTCTTGATCGGCTTATGATGAGGCAAAAAGAGATGGTGGAAGAAGCAGTTGTAGTGTTTGAGTACATGAAAGAGATAAATTCAGTGAACAGCAAGAGTTTTACAATTATGATTCAAGGGTTGTGTCGTGTGAAGGAGATGAAGAAAGCTATGAGATCCCATGATGAAATGTTGAGATTGGGTTTGAAACCTGATTTAGTAACCTATAAGCGTCTTATCTTAGGTTTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009536 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

585

Amino Acids

67.09

Weight (kDa)

8.58

Isoelectric Point (pI)

42.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	186 - 234	3.7e-07	PPR repeat family
PPR_2	PF13041	502 - 551	7.4e-07	PPR repeat family
PPR_2	PF13041	538 - 584	3.1e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016541)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21170
fragaria_vesca	FvH4_3g02620
malus_domestica	MD00G1180200.v1.1
prunus_persica	Prupe.4G025500_v2.0.a1
pyrus_communis	pycom05g31090
rosa_chinensis	RchiOBHm_Chr5g0003911
rosa_laevigata	RLG00000031187
rosa_multiflora	Rmu_sc0011733.1_g000003 Rmu_sc0019391.1_g000005
rosa_roxburghii	Rroxscaffold_1G00072060
rosa_rugosa	Rorug04G0407800
rosa_samantha	Rh5CG037900 Rh5DG034100
rosa_wichuraiana	Rw5G003240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	573, 1274, 1518
AccII	CGCG	2 cut(s)	1281, 1523
AciI	CCGC	4 cut(s)	1281, 1353, 1443, 1523
AclI	AACGTT	2 cut(s)	1022, 1429
AclWI	GGATC	5 cut(s)	161, 217, 312, 708, 1674
AcsI	RAATTY	2 cut(s)	1205, 1603
AcuI	CTGAAG	1 cut(s)	33
AfaI	GTAC	4 cut(s)	1182, 1297, 1467, 1589
AfiI	CCNNNNNNNGG	1 cut(s)	291
AflII	CTTAAG	1 cut(s)	308
AleI	CACNNNNGTG	1 cut(s)	18
AluBI	AGCT	8 cut(s)	184, 471, 756, 1139, 1239, 1306, 1363, 1673
AluI	AGCT	8 cut(s)	184, 471, 756, 1139, 1239, 1306, 1363, 1673
Alw26I	GTCTC	5 cut(s)	318, 356, 466, 541, 664
AlwI	GGATC	5 cut(s)	161, 217, 312, 708, 1674
AlwNI	CAGNNNCTG	1 cut(s)	100
ApeKI	GCWGC	2 cut(s)	338, 756
ApoI	RAATTY	2 cut(s)	1205, 1603
ArsI	GACNNNNNNTTYG	4 cut(s)	664, 696, 1147, 1179
AspLEI	GCGC	1 cut(s)	1281
AsuHPI	GGTGA	5 cut(s)	198, 455, 546, 980, 1073
AsuII	TTCGAA	1 cut(s)	646
BbvI	GCAGC	2 cut(s)	325, 743
BccI	CCATC	8 cut(s)	67, 294, 730, 829, 934, 1338, 1417, 1552
BcgI	CGANNNNNNTGC	2 cut(s)	1388, 1422
BcoDI	GTCTC	5 cut(s)	318, 356, 466, 541, 664
BfaI	CTAG	2 cut(s)	851, 1451
BfmI	CTRYAG	1 cut(s)	1435
BfrI	CTTAAG	1 cut(s)	308
BisI	GCNGC	2 cut(s)	339, 757
BlpI	GCTNAGC	1 cut(s)	467
BlsI	GCNGC	2 cut(s)	340, 758
BmsI	GCATC	6 cut(s)	436, 799, 880, 898, 1026, 1331
BpmI	CTGGAG	1 cut(s)	203
Bpu1102I	GCTNAGC	1 cut(s)	467
Bpu14I	TTCGAA	1 cut(s)	646
BpuEI	CTTGAG	1 cut(s)	500
BsaBI	GATNNNNATC	2 cut(s)	1149, 1348
BsaI	GGTCTC	1 cut(s)	356
BsaJI	CCNNGG	2 cut(s)	188, 639
BsaXI	ACNNNNNCTCC	2 cut(s)	938, 968
Bsc4I	CCNNNNNNNGG	1 cut(s)	291
Bse1I	ACTGG	3 cut(s)	155, 607, 1467
Bse3DI	GCAATG	1 cut(s)	1063
Bse8I	GATNNNNATC	2 cut(s)	1149, 1348
BseDI	CCNNGG	2 cut(s)	188, 639
BseGI	GGATG	2 cut(s)	65, 844
BseJI	GATNNNNATC	2 cut(s)	1149, 1348
BseLI	CCNNNNNNNGG	1 cut(s)	291
BseMI	GCAATG	1 cut(s)	1063
BseMII	CTCAG	4 cut(s)	704, 903, 1023, 1254
BseNI	ACTGG	3 cut(s)	155, 607, 1467
BseXI	GCAGC	2 cut(s)	325, 743
Bsh1236I	CGCG	2 cut(s)	1281, 1523
BsiSI	CCGG	1 cut(s)	302
BslI	CCNNNNNNNGG	1 cut(s)	291
BsmAI	GTCTC	5 cut(s)	318, 356, 466, 541, 664
BsmI	GAATGC	1 cut(s)	1516
Bso31I	GGTCTC	1 cut(s)	356
Bsp119I	TTCGAA	1 cut(s)	646
Bsp1407I	TGTACA	1 cut(s)	1295
Bsp143I	GATC	6 cut(s)	153, 222, 304, 713, 1531, 1679
Bsp1720I	GCTNAGC	1 cut(s)	467
Bsp19I	CCATGG	1 cut(s)	639
BspACI	CCGC	4 cut(s)	1281, 1353, 1443, 1523
BspCNI	CTCAG	4 cut(s)	703, 904, 1024, 1253
BspFNI	CGCG	2 cut(s)	1281, 1523
BspHI	TCATGA	1 cut(s)	829
BspMAI	CTGCAG	1 cut(s)	1439
BspPI	GGATC	5 cut(s)	161, 217, 312, 708, 1674
BspT104I	TTCGAA	1 cut(s)	646
BspTI	CTTAAG	1 cut(s)	308
BspTNI	GGTCTC	1 cut(s)	356
BsrDI	GCAATG	1 cut(s)	1063
BsrGI	TGTACA	1 cut(s)	1295
BsrI	ACTGG	3 cut(s)	155, 607, 1467
BssECI	CCNNGG	2 cut(s)	188, 639
BssMI	GATC	6 cut(s)	153, 222, 304, 713, 1531, 1679
BssT1I	CCWWGG	2 cut(s)	188, 639
Bst4CI	ACNGT	6 cut(s)	456, 875, 1069, 1094, 1113, 1180
Bst6I	CTCTTC	3 cut(s)	585, 1118, 1245
BstAFI	CTTAAG	1 cut(s)	308
BstAUI	TGTACA	1 cut(s)	1295
BstBI	TTCGAA	1 cut(s)	646
BstC8I	GCNNGC	1 cut(s)	1054
BstDEI	CTNAG	7 cut(s)	467, 472, 690, 912, 1032, 1240, 1744
BstDSI	CCRYGG	1 cut(s)	639
BstF5I	GGATG	2 cut(s)	65, 844
BstFNI	CGCG	2 cut(s)	1281, 1523
BstHHI	GCGC	1 cut(s)	1281
BstKTI	GATC	6 cut(s)	156, 225, 307, 716, 1534, 1682
BstMAI	GTCTC	5 cut(s)	318, 356, 466, 541, 664
BstMBI	GATC	6 cut(s)	153, 222, 304, 713, 1531, 1679
BstMWI	GCNNNNNNNGC	1 cut(s)	1520
BstNSI	RCATGY	2 cut(s)	897, 1413
BstSFI	CTRYAG	1 cut(s)	1435
BstUI	CGCG	2 cut(s)	1281, 1523
BstV1I	GCAGC	2 cut(s)	325, 743
BstX2I	RGATCY	4 cut(s)	222, 304, 713, 1679
BstYI	RGATCY	4 cut(s)	222, 304, 713, 1679
BtgI	CCRYGG	1 cut(s)	639
BtsCI	GGATG	2 cut(s)	65, 844
BtsIMutI	CAGTG	5 cut(s)	452, 1074, 1109, 1460, 1614
Cac8I	GCNNGC	1 cut(s)	1054
CaiI	CAGNNNCTG	1 cut(s)	100
CciI	TCATGA	1 cut(s)	829
CfoI	GCGC	1 cut(s)	1281
CseI	GACGC	2 cut(s)	368, 1724
Csp6I	GTAC	4 cut(s)	1181, 1296, 1466, 1588
CviAII	CATG	7 cut(s)	640, 830, 894, 1410, 1472, 1591, 1685
CviQI	GTAC	4 cut(s)	1181, 1296, 1466, 1588
DdeI	CTNAG	7 cut(s)	467, 472, 690, 912, 1032, 1240, 1744
DpnI	GATC	6 cut(s)	155, 224, 306, 715, 1533, 1681
DpnII	GATC	6 cut(s)	153, 222, 304, 713, 1531, 1679
DraI	TTTAAA	1 cut(s)	730
Eam1104I	CTCTTC	3 cut(s)	585, 1118, 1245
EarI	CTCTTC	3 cut(s)	585, 1118, 1245
Eco130I	CCWWGG	2 cut(s)	188, 639
Eco31I	GGTCTC	1 cut(s)	356
Eco57I	CTGAAG	1 cut(s)	33
EcoRI	GAATTC	1 cut(s)	1205
EcoT14I	CCWWGG	2 cut(s)	188, 639
EcoT22I	ATGCAT	2 cut(s)	429, 895
ErhI	CCWWGG	2 cut(s)	188, 639
FaeI	CATG	7 cut(s)	643, 833, 897, 1413, 1475, 1594, 1688
FatI	CATG	7 cut(s)	639, 829, 893, 1409, 1471, 1590, 1684
FauI	CCCGC	1 cut(s)	1436
Fnu4HI	GCNGC	2 cut(s)	339, 757
FokI	GGATG	2 cut(s)	52, 851
Fsp4HI	GCNGC	2 cut(s)	339, 757
FspBI	CTAG	2 cut(s)	851, 1451
GlaI	GCGC	1 cut(s)	1280
GluI	GCNGC	2 cut(s)	339, 757
GsuI	CTGGAG	1 cut(s)	203
HapII	CCGG	1 cut(s)	302
HgaI	GACGC	2 cut(s)	368, 1724
HhaI	GCGC	1 cut(s)	1281
Hin1II	CATG	7 cut(s)	643, 833, 897, 1413, 1475, 1594, 1688
Hin6I	GCGC	1 cut(s)	1279
HinP1I	GCGC	1 cut(s)	1279
HincII	GTYRAC	2 cut(s)	195, 672
HindII	GTYRAC	2 cut(s)	195, 672
HindIII	AAGCTT	1 cut(s)	1361
HpaII	CCGG	1 cut(s)	302
HphI	GGTGA	5 cut(s)	198, 455, 546, 980, 1073
Hpy166II	GTNNAC	4 cut(s)	195, 672, 1298, 1612
Hpy188I	TCNGA	8 cut(s)	79, 107, 664, 693, 1033, 1167, 1243, 1312
Hpy188III	TCNNGA	7 cut(s)	43, 220, 260, 830, 1116, 1367, 1529
Hpy8I	GTNNAC	4 cut(s)	195, 672, 1298, 1612
Hpy99I	CGWCG	1 cut(s)	147
HpyAV	CCTTC	3 cut(s)	434, 567, 1651
HpyCH4III	ACNGT	6 cut(s)	456, 875, 1069, 1094, 1113, 1180
HpyCH4IV	ACGT	3 cut(s)	142, 1022, 1429
HpyCH4V	TGCA	7 cut(s)	427, 759, 893, 1056, 1224, 1409, 1437
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1520
HpyF3I	CTNAG	7 cut(s)	467, 472, 690, 912, 1032, 1240, 1744
HpySE526I	ACGT	3 cut(s)	142, 1022, 1429
Hsp92II	CATG	7 cut(s)	643, 833, 897, 1413, 1475, 1594, 1688
HspAI	GCGC	1 cut(s)	1279
Kzo9I	GATC	6 cut(s)	153, 222, 304, 713, 1531, 1679
LmnI	GCTCC	1 cut(s)	189
Lsp1109I	GCAGC	2 cut(s)	325, 743
LweI	GCATC	6 cut(s)	436, 799, 880, 898, 1026, 1331
MaeI	CTAG	2 cut(s)	851, 1451
MaeII	ACGT	3 cut(s)	142, 1022, 1429
MaeIII	GTNAC	4 cut(s)	146, 958, 1430, 1723
MalI	GATC	6 cut(s)	155, 224, 306, 715, 1533, 1681
MboI	GATC	6 cut(s)	153, 222, 304, 713, 1531, 1679
MflI	RGATCY	4 cut(s)	222, 304, 713, 1679
MluCI	AATT	9 cut(s)	129, 327, 397, 731, 825, 1205, 1256, 1603, 1629
MlyI	GAGTC	2 cut(s)	49, 91
MmeI	TCCRAC	3 cut(s)	4, 397, 1145
MnlI	CCTC	9 cut(s)	79, 227, 236, 393, 1039, 1237, 1246, 1381, 1539
Mph1103I	ATGCAT	2 cut(s)	429, 895
MseI	TTAA	7 cut(s)	174, 309, 494, 597, 729, 824, 1103
MslI	CAYNNNNRTG	3 cut(s)	18, 510, 1327
MspCI	CTTAAG	1 cut(s)	308
MspI	CCGG	1 cut(s)	302
Mva1269I	GAATGC	1 cut(s)	1516
MvnI	CGCG	2 cut(s)	1281, 1523
MwoI	GCNNNNNNNGC	1 cut(s)	1520
NcoI	CCATGG	1 cut(s)	639
NdeII	GATC	6 cut(s)	153, 222, 304, 713, 1531, 1679
NlaIII	CATG	7 cut(s)	643, 833, 897, 1413, 1475, 1594, 1688
NsiI	ATGCAT	2 cut(s)	429, 895
NspI	RCATGY	2 cut(s)	897, 1413
NspV	TTCGAA	1 cut(s)	646
OliI	CACNNNNGTG	1 cut(s)	18
PagI	TCATGA	1 cut(s)	829
PcsI	WCGNNNNNNNCGW	1 cut(s)	50
PctI	GAATGC	1 cut(s)	1516
PfeI	GAWTC	8 cut(s)	27, 39, 344, 971, 1082, 1370, 1400, 1636
PkrI	GCNGC	2 cut(s)	340, 758
PleI	GAGTC	2 cut(s)	49, 91
PpsI	GAGTC	2 cut(s)	49, 91
PsiI	TTATAA	3 cut(s)	573, 1274, 1518
Psp1406I	AACGTT	2 cut(s)	1022, 1429
PstI	CTGCAG	1 cut(s)	1439
PstNI	CAGNNNCTG	1 cut(s)	100
PsuI	RGATCY	4 cut(s)	222, 304, 713, 1679
RsaI	GTAC	4 cut(s)	1182, 1297, 1467, 1589
RsaNI	GTAC	4 cut(s)	1181, 1296, 1466, 1588
RseI	CAYNNNNRTG	3 cut(s)	18, 510, 1327
SaqAI	TTAA	7 cut(s)	174, 309, 494, 597, 729, 824, 1103
SatI	GCNGC	2 cut(s)	339, 757
Sau3AI	GATC	6 cut(s)	153, 222, 304, 713, 1531, 1679
SchI	GAGTC	2 cut(s)	49, 91
SfaNI	GCATC	6 cut(s)	436, 799, 880, 898, 1026, 1331
SfcI	CTRYAG	1 cut(s)	1435
SfuI	TTCGAA	1 cut(s)	646
SmiMI	CAYNNNNRTG	3 cut(s)	18, 510, 1327
SmlI	CTYRAG	2 cut(s)	308, 479
SmoI	CTYRAG	2 cut(s)	308, 479
Sse9I	AATT	9 cut(s)	129, 327, 397, 731, 825, 1205, 1256, 1603, 1629
SsiI	CCGC	4 cut(s)	1281, 1353, 1443, 1523
SspMI	CTAG	2 cut(s)	851, 1451
StyI	CCWWGG	2 cut(s)	188, 639
TaaI	ACNGT	6 cut(s)	456, 875, 1069, 1094, 1113, 1180
TaiI	ACGT	3 cut(s)	145, 1025, 1432
TasI	AATT	9 cut(s)	129, 327, 397, 731, 825, 1205, 1256, 1603, 1629
TatI	WGTACW	3 cut(s)	1180, 1295, 1587
TfiI	GAWTC	8 cut(s)	27, 39, 344, 971, 1082, 1370, 1400, 1636
Tru1I	TTAA	7 cut(s)	174, 309, 494, 597, 729, 824, 1103
Tru9I	TTAA	7 cut(s)	174, 309, 494, 597, 729, 824, 1103
TscAI	CASTG	5 cut(s)	459, 1074, 1116, 1467, 1614
TseI	GCWGC	2 cut(s)	338, 756
TspDTI	ATGAA	7 cut(s)	818, 907, 1488, 1505, 1607, 1679, 1704
TspGWI	ACGGA	2 cut(s)	218, 1034
TspRI	CASTG	5 cut(s)	459, 1074, 1116, 1467, 1614
Vha464I	CTTAAG	1 cut(s)	308
XapI	RAATTY	2 cut(s)	1205, 1603
XceI	RCATGY	2 cut(s)	897, 1413
XcmI	CCANNNNNNNNNTGG	1 cut(s)	20
XspI	CTAG	2 cut(s)	851, 1451
Zsp2I	ATGCAT	2 cut(s)	429, 895

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.