Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0016541

Physical Location & Seq

Genomic Coordinates Reverse (-)

2785265 .. 2788681

Gene Structure 3417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031187

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2946 bp

ATGCTTCTTCTTCTTCTTCGCAAAGCTTATTCCACAACTTCCAGTACGTCCCTCACTTGGAGAACCCAAATCAAACAAGCTCACTTAGCCTCCCAAATATCCTTGATTCTCTTACAGAGACGCAACTGGGTTCCACTCCTCCAAAACCTCAACCTTCCCAAACTAAACCCTCCTCTGTTTCTCCAGATCATCCACAAAACCCAGAGCAACCCACAACTCTCTTTGGATTTCTTCAACTGGGCCAAGTCCAATTTACGTTTCGAACCAGACCTCAAATCCCACTGCCAAATCATCCAACTCTCACTCGGGTCTGGCCTCACCCGACCCGCCAAACCCATCTTGGACACACTAATCCAGAACCATCATGTTTCCAAGCTTGTACAGTCCATGTCTCAGGCTTGTAAAGGTACAGATTCTCTATCCAATGTGTTAAGTTCTGTGCTTGGTTGCTATGCAAGAAAGGGTTTGGTTAGAGAAGGCATAGAGGTTTATAGAGAAATGAGTGTTCTTGGTTGTGTGCCTTCAGGTTTAGCCTGCAATGCATTGCTTAATGCAATGAGGCAAGAAAATGAGACTAGATTGGGTTGGTGTTTCTATGGGGTTATGATCAGAAATGGGGTTTCACCAGACCAGTTTACATGGTCTCTGGTTGCTCAGTTTCTTCGTAAAGATGGGAAATTTGAAAGGATTCTTAGACTTTTGGATTTGGGTGTTTGTGATTCTATGTTTTATAGTCTTCTTGTGGATGGTTATAGCAAAAGTGGGAATTTTGATGCTGCATTTTGCTACTTGGAGAAAATGAGTGATGGGAAATTGGAACCTGGTTTTAGTACTTATAGTTCTGTTCTTGATGGGGCATGTAAACTTGGGGATGTGGAAGTGGTTGAAAGGGTAATGAGGGTTATGGTAGAGAAGAAATTTCTTTCGGAGAGTCCTGTTTTGGAGTATGATTCAATTCTTAAGAAGCTTTGTGCTTTGGACAAAACTTATGCAGCAGAGATGTTCTTTAAGAAAGCGTGTGATGAGAAAATTGAATTGCAAGGTGCTACTTATGGATGTATACTGCAGGCATTGACTAAAGAAATGAGAATAGTGGAAGCTATTCGGGTTTATCTGGTGGTTTGTGAGAGGGGTATAGTAGTGGATGATAGCAGTTATTATGCATTTGCTAATGTCCTATGCAAGGAAGAGCGATCTGAGGAGGGTTTCGAGTTGTTAATGGATGTTATAAGAAGAGGGTTTAGTCCTTGTGCATCAGAATTGTCTGGATTTATATCATTTCTATGTGGCAGGCGTAGATGGAGAGAAGCAGAAGAGGTGTTGAATTCAGTTCTAGACAAAGGGCTACTACCGGATTTGACTTCTTGTTCTTCATTAGTAGGACATTACTGCTCTAGAAGACGGATTGATTCAGCTATGGCATTGTACAGTAAGATAGAAAAACTGAACGGCAGTTTGGATGTGACAAGTTACAATGTACTTCTTGGTGGGCTTTTTGCAGCGAGGAGAATTGAAGAAGCAGTGAGAGTGTTTGATTACATGAGAAGTCACAACTTGATGAGCAGTGAAAGCTTTACAATCATGATTCGTGGGCTTTGTCAAGTAAAGGAACTGAGAACAGCCATGAAAATTCATGATGAAATGTTGAAGATGGGACTTAAGCCTCCTGCAGCAACTTATAAACGTTTGATATATGCATTCAACGGGCTTTGTCGTCTAAAGGAGCTGAGAAATGCCATGAGAGTTCATGATCAAATGTTGAAGATGGAGCTTAAACCTCCTGCAGCTACTTATAGTCATCTAGTATATGGATTCAGACCAAAGAGTCAAGAGTCAACACTCAAAAATCCAAGTCTTCTTCCTCACAAATCAAAAACCCCAAATTTCCTCTCTGCAATGAGGAAAACCCCAACCCTAACAATGTCTCAAATTCCCAAAATGCCCCTCTCCCTCCTCCTCATCTCCGCCCTCCTCATCCTCACCGCCTCCTCCCAATCGGACCTCGTCTCGGAGCTCCAATCCCTCCAATCCCGATCCACATCCGGCGTGATCCGCTTCACCGACCAATCCGTCTCCCGCTTCCTCACCTCCGCCCAAACCCCCCGCCCCTACTCCCTCCTCATCTTCTTCGACGCCGCCAAGCTCCACGAGAAACCGGAGCTCCACCTCTCCGACCTCCACCATGAGTTCTCCCTCGTCGCCGCCTCCTTCATCGCCAACAACGCCGACGAATCCTCGCCGTCCCACTCCAAGCTCTTCTTCGCCGACATCGAATTCCAGGACTCGCAGAACAGCTTCGCCCAATTCGGCGTCAACTCCCTGCCCCACATCCGCCTCGTCGGGCCGGGTCAGAGCCCGAAAGAGTCCGTCCAGATGGAGCAGGGCGATTTCGCCAGACTCGCCGAGTCAATGTCCGAGTTCATCGAATCCAAGACCAAGCTAGTCGTCGGCCCAATCCAACGCCCGCCGATGTTCTCCCGGAACCAGATCATCCTCGCCGTCACGGCGTGGCTGATCTGGACGCCGTTCATTATCAAGAAGATTATCAACGGCAAGACTCTGCTTCACGATCCCAGGGTTTGGTTGAGTGGGGCGGTTTTCGTCTACTTCTTCAGTGTCTCCGGCGCTATGCACAACATTATCAGGAAAATGCCGATGTTCTTGGCCGACAGGAACGACCCGACGAAGCTGGTTTTCTTTTATCAGGGATCGGGAATGCAGCTCGGAACAGAGGGGTTTGCTATCGGGTTCTTGTATACTATCGTCGGGTTGCTGCTGGCGTTTCTTACCAGGGTGCTTGTGAGGGTGAGGAATGTGAATGCGCAGCGGATTGTTATGCTTGTGGCGCTGGCGGTTTCGTTTTGGGCTGTGAAGAAGGTGGTGTATTTGGATAACTGGAAGACCGGGTATGGTATCCATGCTTTCTGGCCTTCGAGCTGGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009507 GO:0009536 GO:0009856 GO:0009987 GO:0010483 GO:0012505 GO:0016020 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0022414 GO:0031984 GO:0032501 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0051703 GO:0051704 GO:0070085 GO:0071704 GO:0071944 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

OST3_OST6

Protein Analysis

982

Amino Acids

110.63

Weight (kDa)

9.23

Isoelectric Point (pI)

48.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	241 - 288	3.4e-07	PPR repeat family
PPR_2	PF13041	451 - 498	2.5e-06	PPR repeat family
PPR_long	PF17177	464 - 601	1.1e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	487 - 534	1.8e-10	PPR repeat family
PPR_2	PF13041	523 - 567	1.1e-07	PPR repeat family
OST3_OST6	PF04756	671 - 970	4.4e-76	OST3 / OST6 family, transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016541)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21170
fragaria_vesca	FvH4_3g02620
malus_domestica	MD00G1180200.v1.1
prunus_persica	Prupe.4G025500_v2.0.a1
pyrus_communis	pycom05g31090
rosa_chinensis	RchiOBHm_Chr5g0003911
rosa_laevigata	RLG00000031187
rosa_multiflora	Rmu_sc0011733.1_g000003 Rmu_sc0019391.1_g000005
rosa_roxburghii	Rroxscaffold_1G00072060
rosa_rugosa	Rorug04G0407800
rosa_samantha	Rh5CG037900 Rh5DG034100
rosa_wichuraiana	Rw5G003240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1229, 1680
AasI	GACNNNNNNGTC	2 cut(s)	1824, 2069
Acc16I	TGCGCA	1 cut(s)	2823
AccB7I	CCANNNNNTGG	1 cut(s)	2580
AccI	GTMKAC	3 cut(s)	1060, 2604, 2756
AclI	AACGTT	1 cut(s)	1684
AclWI	GGATC	4 cut(s)	2028, 2044, 2564, 2716
AcoI	YGGCCR	1 cut(s)	2664
AcsI	RAATTY	8 cut(s)	677, 766, 917, 1324, 1629, 1882, 1929, 2273
AcuI	CTGAAG	2 cut(s)	507, 2596
AcyI	GRCGYC	3 cut(s)	2133, 2310, 2522
AdeI	CACNNNGTG	1 cut(s)	2508
AfaI	GTAC	6 cut(s)	46, 381, 409, 832, 1427, 1479
AfiI	CCNNNNNNNGG	4 cut(s)	57, 1183, 2008, 2580
AflII	CTTAAG	2 cut(s)	959, 1658
AjnI	CCWGG	4 cut(s)	820, 2277, 2573, 2789
AjuI	GAANNNNNNNTTGG	6 cut(s)	242, 274, 1439, 1471, 2243, 2275
Alw21I	GWGCWC	2 cut(s)	2016, 2163
Alw26I	GTCTC	8 cut(s)	112, 396, 566, 648, 1929, 2011, 2077, 2623
AlwI	GGATC	4 cut(s)	2028, 2044, 2564, 2716
Ama87I	CYCGRG	1 cut(s)	305
AoxI	GGCC	6 cut(s)	240, 313, 2342, 2449, 2664, 2927
ApeKI	GCWGC	8 cut(s)	776, 992, 1499, 1670, 1784, 2719, 2773, 2824
ApoI	RAATTY	8 cut(s)	677, 766, 917, 1324, 1629, 1882, 1929, 2273
Asp700I	GAANNNNTTC	3 cut(s)	687, 1101, 2294
AspLEI	GCGC	3 cut(s)	2627, 2824, 2848
AspS9I	GGNCC	4 cut(s)	240, 1999, 2342, 2450
AsuC2I	CCSGG	3 cut(s)	2346, 2479, 2905
AsuHPI	GGTGA	6 cut(s)	310, 615, 1972, 2050, 2077, 2818
AsuII	TTCGAA	1 cut(s)	261
AvaI	CYCGRG	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	1999
BanII	GRGCYC	3 cut(s)	2016, 2163, 2357
BauI	CACGAG	1 cut(s)	2147
BbsI	GAAGAC	4 cut(s)	728, 1405, 1847, 2906
Bbv12I	GWGCWC	2 cut(s)	2016, 2163
BbvI	GCAGC	8 cut(s)	763, 1004, 1511, 1682, 1796, 2731, 2760, 2836
BceAI	ACGGC	6 cut(s)	1465, 2224, 2483, 2509, 2520, 2566
BciT130I	CCWGG	4 cut(s)	822, 2279, 2575, 2791
BciVI	GTATCC	1 cut(s)	2924
BclI	TGATCA	2 cut(s)	606, 1750
BcnI	CCSGG	3 cut(s)	2346, 2479, 2905
BcoDI	GTCTC	8 cut(s)	112, 396, 566, 648, 1929, 2011, 2077, 2623
BfaI	CTAG	5 cut(s)	576, 1334, 1395, 1802, 2441
BfmI	CTRYAG	3 cut(s)	1064, 1668, 1782
BfoI	RGCGCY	2 cut(s)	2628, 2849
BfrI	CTTAAG	2 cut(s)	959, 1658
BfuI	GTATCC	1 cut(s)	2924
BglI	GCCNNNNNGGC	1 cut(s)	2504
BmcAI	AGTACT	1 cut(s)	832
Bme1390I	CCNGG	7 cut(s)	822, 2279, 2346, 2479, 2575, 2791, 2905
Bme18I	GGWCC	1 cut(s)	1999
BmeT110I	CYCGRG	1 cut(s)	305
BmgT120I	GGNCC	4 cut(s)	240, 1999, 2342, 2450
BmiI	GGNNCC	3 cut(s)	132, 819, 2483
BmrFI	CCNGG	7 cut(s)	822, 2279, 2346, 2479, 2575, 2791, 2905
BmrI	ACTGGG	2 cut(s)	136, 247
BmsI	GCATC	2 cut(s)	763, 1262
BmuI	ACTGGG	2 cut(s)	136, 247
BpiI	GAAGAC	4 cut(s)	728, 1405, 1847, 2906
BpmI	CTGGAG	1 cut(s)	167
Bpu14I	TTCGAA	1 cut(s)	261
BpuMI	CCSGG	3 cut(s)	2346, 2479, 2905
BsaBI	GATNNNNATC	2 cut(s)	1273, 2038
BsaHI	GRCGYC	3 cut(s)	2133, 2310, 2522
BsaI	GGTCTC	1 cut(s)	648
BsaJI	CCNNGG	3 cut(s)	2573, 2574, 2790
BsaWI	WCCGGW	2 cut(s)	1351, 2155
BsaXI	ACNNNNNCTCC	4 cut(s)	74, 104, 2145, 2175
Bsc4I	CCNNNNNNNGG	4 cut(s)	57, 1183, 2008, 2580
Bse1I	ACTGG	5 cut(s)	42, 131, 242, 631, 2900
Bse3DI	GCAATG	4 cut(s)	542, 544, 561, 1902
Bse8I	GATNNNNATC	2 cut(s)	1273, 2038
BseBI	CCWGG	4 cut(s)	822, 2279, 2575, 2791
BseDI	CCNNGG	3 cut(s)	2573, 2574, 2790
BseJI	GATNNNNATC	2 cut(s)	1273, 2038
BseLI	CCNNNNNNNGG	4 cut(s)	57, 1183, 2008, 2580
BseMI	GCAATG	4 cut(s)	542, 544, 561, 1902
BseMII	CTCAG	5 cut(s)	407, 668, 1188, 1604, 1718
BseNI	ACTGG	5 cut(s)	42, 131, 242, 631, 2900
BseRI	GAGGAG	9 cut(s)	128, 162, 1214, 1519, 1943, 1946, 1961, 1978, 2108
BseXI	GCAGC	8 cut(s)	763, 1004, 1511, 1682, 1796, 2731, 2760, 2836
BshFI	GGCC	6 cut(s)	242, 315, 2344, 2451, 2666, 2929
BsiHKAI	GWGCWC	2 cut(s)	2016, 2163
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	7 cut(s)	1352, 2043, 2156, 2345, 2479, 2622, 2904
BslFI	GGGAC	3 cut(s)	34, 1668, 2227
BslI	CCNNNNNNNGG	4 cut(s)	57, 1183, 2008, 2580
BsmAI	GTCTC	8 cut(s)	112, 396, 566, 648, 1929, 2011, 2077, 2623
BsmBI	CGTCTC	3 cut(s)	112, 2011, 2077
BsmFI	GGGAC	3 cut(s)	34, 1668, 2227
BsmI	GAATGC	3 cut(s)	1697, 2721, 2824
BsnI	GGCC	6 cut(s)	242, 315, 2344, 2451, 2666, 2929
Bso31I	GGTCTC	1 cut(s)	648
BsoBI	CYCGRG	1 cut(s)	305
Bsp119I	TTCGAA	1 cut(s)	261
Bsp1286I	GDGCHC	3 cut(s)	2016, 2163, 2357
Bsp1407I	TGTACA	2 cut(s)	379, 1425
BspANI	GGCC	6 cut(s)	242, 315, 2344, 2451, 2666, 2929
BspCNI	CTCAG	5 cut(s)	406, 667, 1189, 1605, 1719
BspHI	TCATGA	3 cut(s)	1581, 1633, 1747
BspLI	GGNNCC	3 cut(s)	132, 819, 2483
BspMAI	CTGCAG	3 cut(s)	1068, 1672, 1786
BspPI	GGATC	4 cut(s)	2028, 2044, 2564, 2716
BspQI	GCTCTTC	2 cut(s)	1182, 2261
BspT104I	TTCGAA	1 cut(s)	261
BspTI	CTTAAG	2 cut(s)	959, 1658
BspTNI	GGTCTC	1 cut(s)	648
BsrDI	GCAATG	4 cut(s)	542, 544, 561, 1902
BsrGI	TGTACA	2 cut(s)	379, 1425
BsrI	ACTGG	5 cut(s)	42, 131, 242, 631, 2900
BssECI	CCNNGG	3 cut(s)	2573, 2574, 2790
BssNAI	GTATAC	2 cut(s)	1061, 2757
BssNI	GRCGYC	3 cut(s)	2133, 2310, 2522
BssSI	CACGAG	1 cut(s)	2147
Bst1107I	GTATAC	2 cut(s)	1061, 2757
Bst2BI	CACGAG	1 cut(s)	2147
Bst2UI	CCWGG	4 cut(s)	822, 2279, 2575, 2791
Bst4CI	ACNGT	2 cut(s)	384, 1430
Bst6I	CTCTTC	4 cut(s)	1182, 1228, 1308, 2261
BstACI	GRCGYC	3 cut(s)	2133, 2310, 2522
BstAFI	CTTAAG	2 cut(s)	959, 1658
BstAUI	TGTACA	2 cut(s)	379, 1425
BstBI	TTCGAA	1 cut(s)	261
BstC8I	GCNNGC	6 cut(s)	535, 1068, 1292, 2465, 2778, 2850
BstDEI	CTNAG	7 cut(s)	85, 393, 654, 692, 1197, 1613, 1727
BstENI	CCTNNNNNAGG	1 cut(s)	1181
BstH2I	RGCGCY	2 cut(s)	2628, 2849
BstHHI	GCGC	3 cut(s)	2627, 2824, 2848
BstMAI	GTCTC	8 cut(s)	112, 396, 566, 648, 1929, 2011, 2077, 2623
BstMWI	GCNNNNNNNGC	8 cut(s)	86, 539, 1569, 2052, 2222, 2399, 2504, 2845
BstNI	CCWGG	4 cut(s)	822, 2279, 2575, 2791
BstNSI	RCATGY	1 cut(s)	861
BstSCI	CCNGG	7 cut(s)	820, 2277, 2344, 2477, 2573, 2789, 2903
BstSFI	CTRYAG	3 cut(s)	1064, 1668, 1782
BstV1I	GCAGC	8 cut(s)	763, 1004, 1511, 1682, 1796, 2731, 2760, 2836
BstV2I	GAAGAC	4 cut(s)	728, 1405, 1847, 2906
BstZ17I	GTATAC	2 cut(s)	1061, 2757
BsuI	GTATCC	1 cut(s)	2924
BsuRI	GGCC	6 cut(s)	242, 315, 2344, 2451, 2666, 2929
BtgZI	GCGATG	1 cut(s)	2197
BtsI	GCAGTG	3 cut(s)	280, 1527, 1570
BtsIMutI	CAGTG	4 cut(s)	280, 1527, 1570, 2620
Cac8I	GCNNGC	6 cut(s)	535, 1068, 1292, 2465, 2778, 2850
CciI	TCATGA	3 cut(s)	1581, 1633, 1747
CfoI	GCGC	3 cut(s)	2627, 2824, 2848
Cfr13I	GGNCC	4 cut(s)	240, 1999, 2342, 2450
CseI	GACGC	4 cut(s)	129, 2141, 2299, 2530
CsiI	ACCWGGT	1 cut(s)	820
Csp6I	GTAC	6 cut(s)	45, 380, 408, 831, 1426, 1478
CviQI	GTAC	6 cut(s)	45, 380, 408, 831, 1426, 1478
DdeI	CTNAG	7 cut(s)	85, 393, 654, 692, 1197, 1613, 1727
DraIII	CACNNNGTG	1 cut(s)	2508
DrdI	GACNNNNNNGTC	2 cut(s)	1824, 2069
DseDI	GACNNNNNNGTC	2 cut(s)	1824, 2069
EaeI	YGGCCR	1 cut(s)	2664
Eam1104I	CTCTTC	4 cut(s)	1182, 1228, 1308, 2261
EarI	CTCTTC	4 cut(s)	1182, 1228, 1308, 2261
EciI	GGCGGA	3 cut(s)	1954, 2080, 2321
Ecl136II	GAGCTC	2 cut(s)	2014, 2161
Eco24I	GRGCYC	3 cut(s)	2016, 2163, 2357
Eco31I	GGTCTC	1 cut(s)	648
Eco47I	GGWCC	1 cut(s)	1999
Eco53kI	GAGCTC	2 cut(s)	2014, 2161
Eco57I	CTGAAG	2 cut(s)	507, 2596
Eco88I	CYCGRG	1 cut(s)	305
EcoICRI	GAGCTC	2 cut(s)	2014, 2161
EcoNI	CCTNNNNNAGG	1 cut(s)	1181
EcoRI	GAATTC	2 cut(s)	1324, 2273
EcoRII	CCWGG	4 cut(s)	820, 2277, 2573, 2789
EcoT22I	ATGCAT	3 cut(s)	544, 1165, 1699
EcoT38I	GRGCYC	3 cut(s)	2016, 2163, 2357
Esp3I	CGTCTC	3 cut(s)	112, 2011, 2077
FalI	AAGNNNNNCTT	2 cut(s)	2243, 2275
FaqI	GGGAC	3 cut(s)	34, 1668, 2227
FauI	CCCGC	4 cut(s)	334, 2084, 2111, 2472
FbaI	TGATCA	2 cut(s)	606, 1750
FblI	GTMKAC	3 cut(s)	1060, 2604, 2756
FriOI	GRGCYC	3 cut(s)	2016, 2163, 2357
FspBI	CTAG	5 cut(s)	576, 1334, 1395, 1802, 2441
FspI	TGCGCA	1 cut(s)	2823
GlaI	GCGC	3 cut(s)	2626, 2823, 2847
GsuI	CTGGAG	1 cut(s)	167
HaeII	RGCGCY	2 cut(s)	2628, 2849
HaeIII	GGCC	6 cut(s)	242, 315, 2344, 2451, 2666, 2929
HapII	CCGG	7 cut(s)	1352, 2043, 2156, 2345, 2479, 2622, 2904
HgaI	GACGC	4 cut(s)	129, 2141, 2299, 2530
HhaI	GCGC	3 cut(s)	2627, 2824, 2848
Hin1I	GRCGYC	3 cut(s)	2133, 2310, 2522
Hin6I	GCGC	3 cut(s)	2625, 2822, 2846
HinP1I	GCGC	3 cut(s)	2625, 2822, 2846
HincII	GTYRAC	2 cut(s)	1836, 2314
HindII	GTYRAC	2 cut(s)	1836, 2314
HindIII	AAGCTT	4 cut(s)	24, 374, 965, 1570
HpaII	CCGG	7 cut(s)	1352, 2043, 2156, 2345, 2479, 2622, 2904
HphI	GGTGA	6 cut(s)	310, 615, 1972, 2050, 2077, 2818
Hpy166II	GTNNAC	7 cut(s)	636, 863, 1061, 1836, 2314, 2605, 2757
Hpy8I	GTNNAC	7 cut(s)	636, 863, 1061, 1836, 2314, 2605, 2757
Hpy99I	CGWCG	7 cut(s)	2135, 2201, 2231, 2342, 2450, 2686, 2768
HpyAV	CCTTC	6 cut(s)	164, 470, 531, 2218, 2869, 2940
HpyCH4III	ACNGT	2 cut(s)	384, 1430
HpyCH4IV	ACGT	3 cut(s)	47, 256, 1684
HpyF10VI	GCNNNNNNNGC	8 cut(s)	86, 539, 1569, 2052, 2222, 2399, 2504, 2845
HpyF3I	CTNAG	7 cut(s)	85, 393, 654, 692, 1197, 1613, 1727
HpySE526I	ACGT	3 cut(s)	47, 256, 1684
Hsp92I	GRCGYC	3 cut(s)	2133, 2310, 2522
HspAI	GCGC	3 cut(s)	2625, 2822, 2846
Ksp22I	TGATCA	2 cut(s)	606, 1750
LguI	GCTCTTC	2 cut(s)	1182, 2261
LmnI	GCTCC	8 cut(s)	1723, 1768, 2011, 2019, 2148, 2158, 2166, 2377
Lsp1109I	GCAGC	8 cut(s)	763, 1004, 1511, 1682, 1796, 2731, 2760, 2836
LweI	GCATC	2 cut(s)	763, 1262
MabI	ACCWGGT	1 cut(s)	820
MaeI	CTAG	5 cut(s)	576, 1334, 1395, 1802, 2441
MaeII	ACGT	3 cut(s)	47, 256, 1684
MaeIII	GTNAC	4 cut(s)	1462, 1469, 1547, 2500
MhlI	GDGCHC	3 cut(s)	2016, 2163, 2357
MlyI	GAGTC	8 cut(s)	940, 1834, 1841, 2276, 2372, 2391, 2414, 2551
MmeI	TCCRAC	3 cut(s)	319, 2196, 2482
Mph1103I	ATGCAT	3 cut(s)	544, 1165, 1699
MroXI	GAANNNNTTC	3 cut(s)	687, 1101, 2294
MseI	TTAA	7 cut(s)	431, 549, 960, 1008, 1217, 1659, 1773
MslI	CAYNNNNRTG	1 cut(s)	1282
MspA1I	CMGCKG	1 cut(s)	2827
MspCI	CTTAAG	2 cut(s)	959, 1658
MspI	CCGG	7 cut(s)	1352, 2043, 2156, 2345, 2479, 2622, 2904
MspR9I	CCNGG	7 cut(s)	822, 2279, 2346, 2479, 2575, 2791, 2905
Mva1269I	GAATGC	3 cut(s)	1697, 2721, 2824
MvaI	CCWGG	4 cut(s)	822, 2279, 2575, 2791
MwoI	GCNNNNNNNGC	8 cut(s)	86, 539, 1569, 2052, 2222, 2399, 2504, 2845
NciI	CCSGG	3 cut(s)	2346, 2479, 2905
NlaIV	GGNNCC	3 cut(s)	132, 819, 2483
NmeAIII	GCCGAG	1 cut(s)	2428
NmuCI	GTSAC	3 cut(s)	1462, 1547, 2500
NsbI	TGCGCA	1 cut(s)	2823
NsiI	ATGCAT	3 cut(s)	544, 1165, 1699
NspI	RCATGY	1 cut(s)	861
NspV	TTCGAA	1 cut(s)	261
PagI	TCATGA	3 cut(s)	1581, 1633, 1747
PasI	CCCWGGG	1 cut(s)	2574
PciSI	GCTCTTC	2 cut(s)	1182, 2261
PcsI	WCGNNNNNNNCGW	1 cut(s)	2268
PctI	GAATGC	3 cut(s)	1697, 2721, 2824
PdmI	GAANNNNTTC	3 cut(s)	687, 1101, 2294
PflFI	GACNNNGTC	1 cut(s)	2003
PflMI	CCANNNNNTGG	1 cut(s)	2580
PfoI	TCCNGGA	2 cut(s)	2277, 2477
PleI	GAGTC	8 cut(s)	939, 1833, 1840, 2276, 2371, 2391, 2413, 2551
PpsI	GAGTC	8 cut(s)	939, 1833, 1840, 2276, 2371, 2391, 2413, 2551
PsiI	TTATAA	2 cut(s)	1229, 1680
Psp124BI	GAGCTC	2 cut(s)	2016, 2163
Psp1406I	AACGTT	1 cut(s)	1684
Psp6I	CCWGG	4 cut(s)	820, 2277, 2573, 2789
PspGI	CCWGG	4 cut(s)	820, 2277, 2573, 2789
PspN4I	GGNNCC	3 cut(s)	132, 819, 2483
PspPI	GGNCC	4 cut(s)	240, 1999, 2342, 2450
PsrI	GAACNNNNNNTAC	2 cut(s)	823, 855
PstI	CTGCAG	3 cut(s)	1068, 1672, 1786
PsyI	GACNNNGTC	1 cut(s)	2003
RsaI	GTAC	6 cut(s)	46, 381, 409, 832, 1427, 1479
RsaNI	GTAC	6 cut(s)	45, 380, 408, 831, 1426, 1478
RseI	CAYNNNNRTG	1 cut(s)	1282
SacI	GAGCTC	2 cut(s)	2016, 2163
SapI	GCTCTTC	2 cut(s)	1182, 2261
SaqAI	TTAA	7 cut(s)	431, 549, 960, 1008, 1217, 1659, 1773
Sau96I	GGNCC	4 cut(s)	240, 1999, 2342, 2450
ScaI	AGTACT	1 cut(s)	832
SchI	GAGTC	8 cut(s)	940, 1834, 1841, 2276, 2372, 2391, 2414, 2551
ScrFI	CCNGG	7 cut(s)	822, 2279, 2346, 2479, 2575, 2791, 2905
SduI	GDGCHC	3 cut(s)	2016, 2163, 2357
SexAI	ACCWGGT	1 cut(s)	820
SfaNI	GCATC	2 cut(s)	763, 1262
SfcI	CTRYAG	3 cut(s)	1064, 1668, 1782
SfuI	TTCGAA	1 cut(s)	261
SinI	GGWCC	1 cut(s)	1999
SmiMI	CAYNNNNRTG	1 cut(s)	1282
SmlI	CTYRAG	2 cut(s)	959, 1658
SmoI	CTYRAG	2 cut(s)	959, 1658
SspMI	CTAG	5 cut(s)	576, 1334, 1395, 1802, 2441
SstI	GAGCTC	2 cut(s)	2016, 2163
StyD4I	CCNGG	7 cut(s)	820, 2277, 2344, 2477, 2573, 2789, 2903
TaaI	ACNGT	2 cut(s)	384, 1430
TaiI	ACGT	3 cut(s)	50, 259, 1687
TaqI	TCGA	6 cut(s)	261, 1209, 2130, 2271, 2424, 2933
TatI	WGTACW	4 cut(s)	379, 830, 1425, 1477
TauI	GCSGC	2 cut(s)	2138, 2204
Tru1I	TTAA	7 cut(s)	431, 549, 960, 1008, 1217, 1659, 1773
Tru9I	TTAA	7 cut(s)	431, 549, 960, 1008, 1217, 1659, 1773
TscAI	CASTG	4 cut(s)	287, 1527, 1570, 2620
TseFI	GTSAC	3 cut(s)	1462, 1547, 2500
TseI	GCWGC	8 cut(s)	776, 992, 1499, 1670, 1784, 2719, 2773, 2824
Tsp45I	GTSAC	3 cut(s)	1462, 1547, 2500
TspDTI	ATGAA	8 cut(s)	1362, 1622, 1640, 1653, 1736, 2200, 2410, 2518
TspGWI	ACGGA	3 cut(s)	1417, 2059, 2356
TspRI	CASTG	4 cut(s)	287, 1527, 1570, 2620
Tth111I	GACNNNGTC	1 cut(s)	2003
Van91I	CCANNNNNTGG	1 cut(s)	2580
Vha464I	CTTAAG	2 cut(s)	959, 1658
VpaK11BI	GGWCC	1 cut(s)	1999
XagI	CCTNNNNNAGG	1 cut(s)	1181
XapI	RAATTY	8 cut(s)	677, 766, 917, 1324, 1629, 1882, 1929, 2273
XbaI	TCTAGA	2 cut(s)	1333, 1394
XceI	RCATGY	1 cut(s)	861
XcmI	CCANNNNNNNNNTGG	1 cut(s)	337
XmiI	GTMKAC	3 cut(s)	1060, 2604, 2756
XmnI	GAANNNNTTC	3 cut(s)	687, 1101, 2294
XspI	CTAG	5 cut(s)	576, 1334, 1395, 1802, 2441
ZrmI	AGTACT	1 cut(s)	832
Zsp2I	ATGCAT	3 cut(s)	544, 1165, 1699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.