Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G21170 |
| fragaria_vesca | FvH4_3g02620 |
| malus_domestica | MD00G1180200.v1.1 |
| prunus_persica | Prupe.4G025500_v2.0.a1 |
| pyrus_communis | pycom05g31090 |
| rosa_chinensis | RchiOBHm_Chr5g0003911 |
| rosa_laevigata | RLG00000031187 |
| rosa_multiflora | Rmu_sc0011733.1_g000003 Rmu_sc0019391.1_g000005 |
| rosa_roxburghii | Rroxscaffold_1G00072060 |
| rosa_rugosa | Rorug04G0407800 |
| rosa_samantha | Rh5CG037900 Rh5DG034100 |
| rosa_wichuraiana | Rw5G003240 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1223, 1674 |
| AccII | CGCG | 1 cut(s) | 1584 |
| AciI | CCGC | 4 cut(s) | 321, 986, 1281, 1584 |
| AclI | AACGTT | 1 cut(s) | 1678 |
| AcsI | RAATTY | 4 cut(s) | 671, 760, 1318, 1623 |
| AcuI | CTGAAG | 2 cut(s) | 501, 1673 |
| AfaI | GTAC | 5 cut(s) | 40, 375, 403, 826, 1473 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 51, 1177 |
| AjnI | CCWGG | 1 cut(s) | 814 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 236, 268, 1433, 1465 |
| AluBI | AGCT | 7 cut(s) | 20, 74, 370, 961, 1094, 1409, 1566 |
| AluI | AGCT | 7 cut(s) | 20, 74, 370, 961, 1094, 1409, 1566 |
| Alw26I | GTCTC | 3 cut(s) | 106, 390, 642 |
| Ama87I | CYCGRG | 1 cut(s) | 299 |
| AoxI | GGCC | 3 cut(s) | 234, 307, 1614 |
| ApeKI | GCWGC | 4 cut(s) | 770, 1057, 1493, 1664 |
| ApoI | RAATTY | 4 cut(s) | 671, 760, 1318, 1623 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 681, 1095 |
| AspS9I | GGNCC | 1 cut(s) | 234 |
| AsuHPI | GGTGA | 1 cut(s) | 304 |
| AsuII | TTCGAA | 1 cut(s) | 255 |
| AvaI | CYCGRG | 1 cut(s) | 299 |
| BbsI | GAAGAC | 1 cut(s) | 1399 |
| BbvI | GCAGC | 4 cut(s) | 757, 1044, 1505, 1676 |
| BccI | CCATC | 9 cut(s) | 338, 363, 659, 734, 794, 839, 1287, 1423, 1639 |
| BceAI | ACGGC | 1 cut(s) | 1459 |
| BciT130I | CCWGG | 1 cut(s) | 816 |
| BcoDI | GTCTC | 3 cut(s) | 106, 390, 642 |
| BfaI | CTAG | 3 cut(s) | 570, 1328, 1389 |
| BfmI | CTRYAG | 2 cut(s) | 1058, 1662 |
| BisI | GCNGC | 6 cut(s) | 771, 987, 1058, 1282, 1494, 1665 |
| BlsI | GCNGC | 6 cut(s) | 772, 988, 1059, 1283, 1495, 1666 |
| BmcAI | AGTACT | 2 cut(s) | 40, 826 |
| Bme1390I | CCNGG | 1 cut(s) | 816 |
| BmeT110I | CYCGRG | 1 cut(s) | 299 |
| BmgT120I | GGNCC | 1 cut(s) | 234 |
| BmiI | GGNNCC | 2 cut(s) | 126, 813 |
| BmrFI | CCNGG | 1 cut(s) | 816 |
| BmrI | ACTGGG | 2 cut(s) | 130, 241 |
| BmsI | GCATC | 3 cut(s) | 92, 757, 1256 |
| BmuI | ACTGGG | 2 cut(s) | 130, 241 |
| BpiI | GAAGAC | 1 cut(s) | 1399 |
| BpmI | CTGGAG | 1 cut(s) | 161 |
| Bpu14I | TTCGAA | 1 cut(s) | 255 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1267 |
| BsaI | GGTCTC | 1 cut(s) | 642 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 51, 1177 |
| Bse1I | ACTGG | 4 cut(s) | 36, 125, 236, 625 |
| Bse3DI | GCAATG | 3 cut(s) | 536, 538, 1415 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1267 |
| BseBI | CCWGG | 1 cut(s) | 816 |
| BseGI | GGATG | 9 cut(s) | 83, 183, 285, 745, 871, 1055, 1144, 1222, 1459 |
| BseJI | GATNNNNATC | 1 cut(s) | 1267 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 51, 1177 |
| BseMI | GCAATG | 3 cut(s) | 536, 538, 1415 |
| BseMII | CTCAG | 5 cut(s) | 401, 616, 662, 1182, 1598 |
| BseNI | ACTGG | 4 cut(s) | 36, 125, 236, 625 |
| BseRI | GAGGAG | 4 cut(s) | 85, 156, 1208, 1513 |
| BseXI | GCAGC | 4 cut(s) | 757, 1044, 1505, 1676 |
| Bsh1236I | CGCG | 1 cut(s) | 1584 |
| BshFI | GGCC | 3 cut(s) | 236, 309, 1616 |
| BsiHKCI | CYCGRG | 1 cut(s) | 299 |
| BsiSI | CCGG | 1 cut(s) | 1346 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 51, 1177 |
| BsmAI | GTCTC | 3 cut(s) | 106, 390, 642 |
| BsmBI | CGTCTC | 1 cut(s) | 106 |
| BsmI | GAATGC | 1 cut(s) | 1691 |
| BsnI | GGCC | 3 cut(s) | 236, 309, 1616 |
| Bso31I | GGTCTC | 1 cut(s) | 642 |
| BsoBI | CYCGRG | 1 cut(s) | 299 |
| Bsp119I | TTCGAA | 1 cut(s) | 255 |
| Bsp1407I | TGTACA | 1 cut(s) | 373 |
| Bsp143I | GATC | 3 cut(s) | 180, 1187, 1572 |
| BspACI | CCGC | 4 cut(s) | 321, 986, 1281, 1584 |
| BspANI | GGCC | 3 cut(s) | 236, 309, 1616 |
| BspCNI | CTCAG | 5 cut(s) | 400, 615, 661, 1183, 1599 |
| BspFNI | CGCG | 1 cut(s) | 1584 |
| BspHI | TCATGA | 2 cut(s) | 1575, 1627 |
| BspLI | GGNNCC | 2 cut(s) | 126, 813 |
| BspMAI | CTGCAG | 2 cut(s) | 1062, 1666 |
| BspQI | GCTCTTC | 1 cut(s) | 1176 |
| BspT104I | TTCGAA | 1 cut(s) | 255 |
| BspTNI | GGTCTC | 1 cut(s) | 642 |
| BsrDI | GCAATG | 3 cut(s) | 536, 538, 1415 |
| BsrGI | TGTACA | 1 cut(s) | 373 |
| BsrI | ACTGG | 4 cut(s) | 36, 125, 236, 625 |
| BssMI | GATC | 3 cut(s) | 180, 1187, 1572 |
| Bst2UI | CCWGG | 1 cut(s) | 816 |
| Bst4CI | ACNGT | 3 cut(s) | 378, 728, 1424 |
| Bst6I | CTCTTC | 2 cut(s) | 1176, 1222 |
| BstAUI | TGTACA | 1 cut(s) | 373 |
| BstBI | TTCGAA | 1 cut(s) | 255 |
| BstC8I | GCNNGC | 4 cut(s) | 529, 1062, 1286, 1586 |
| BstDEI | CTNAG | 7 cut(s) | 79, 387, 602, 648, 686, 1191, 1607 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1175 |
| BstF5I | GGATG | 9 cut(s) | 83, 183, 285, 745, 871, 1055, 1144, 1222, 1459 |
| BstFNI | CGCG | 1 cut(s) | 1584 |
| BstKTI | GATC | 3 cut(s) | 183, 1190, 1575 |
| BstMAI | GTCTC | 3 cut(s) | 106, 390, 642 |
| BstMBI | GATC | 3 cut(s) | 180, 1187, 1572 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 80, 533, 1563 |
| BstNI | CCWGG | 1 cut(s) | 816 |
| BstNSI | RCATGY | 1 cut(s) | 855 |
| BstSCI | CCNGG | 1 cut(s) | 814 |
| BstSFI | CTRYAG | 2 cut(s) | 1058, 1662 |
| BstUI | CGCG | 1 cut(s) | 1584 |
| BstV1I | GCAGC | 4 cut(s) | 757, 1044, 1505, 1676 |
| BstV2I | GAAGAC | 1 cut(s) | 1399 |
| BsuRI | GGCC | 3 cut(s) | 236, 309, 1616 |
| BtsCI | GGATG | 9 cut(s) | 83, 183, 285, 745, 871, 1055, 1144, 1222, 1459 |
| BtsI | GCAGTG | 3 cut(s) | 274, 1521, 1564 |
| BtsIMutI | CAGTG | 4 cut(s) | 274, 733, 1521, 1564 |
| Cac8I | GCNNGC | 4 cut(s) | 529, 1062, 1286, 1586 |
| CciI | TCATGA | 2 cut(s) | 1575, 1627 |
| Cfr13I | GGNCC | 1 cut(s) | 234 |
| CseI | GACGC | 1 cut(s) | 123 |
| CsiI | ACCWGGT | 1 cut(s) | 814 |
| Csp6I | GTAC | 5 cut(s) | 39, 374, 402, 825, 1472 |
| CviAII | CATG | 8 cut(s) | 359, 382, 633, 852, 1534, 1576, 1618, 1628 |
| CviQI | GTAC | 5 cut(s) | 39, 374, 402, 825, 1472 |
| DdeI | CTNAG | 7 cut(s) | 79, 387, 602, 648, 686, 1191, 1607 |
| DpnI | GATC | 3 cut(s) | 182, 1189, 1574 |
| DpnII | GATC | 3 cut(s) | 180, 1187, 1572 |
| Eam1104I | CTCTTC | 2 cut(s) | 1176, 1222 |
| EarI | CTCTTC | 2 cut(s) | 1176, 1222 |
| Eco31I | GGTCTC | 1 cut(s) | 642 |
| Eco57I | CTGAAG | 2 cut(s) | 501, 1673 |
| Eco88I | CYCGRG | 1 cut(s) | 299 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1175 |
| EcoRI | GAATTC | 1 cut(s) | 1318 |
| EcoRII | CCWGG | 1 cut(s) | 814 |
| EcoT22I | ATGCAT | 3 cut(s) | 538, 1159, 1693 |
| Esp3I | CGTCTC | 1 cut(s) | 106 |
| FaeI | CATG | 8 cut(s) | 362, 385, 636, 855, 1537, 1579, 1621, 1631 |
| FatI | CATG | 8 cut(s) | 358, 381, 632, 851, 1533, 1575, 1617, 1627 |
| FauI | CCCGC | 2 cut(s) | 328, 1577 |
| Fnu4HI | GCNGC | 6 cut(s) | 771, 987, 1058, 1282, 1494, 1665 |
| FokI | GGATG | 9 cut(s) | 70, 170, 272, 752, 878, 1062, 1151, 1229, 1466 |
| Fsp4HI | GCNGC | 6 cut(s) | 771, 987, 1058, 1282, 1494, 1665 |
| FspBI | CTAG | 3 cut(s) | 570, 1328, 1389 |
| GluI | GCNGC | 6 cut(s) | 771, 987, 1058, 1282, 1494, 1665 |
| GsuI | CTGGAG | 1 cut(s) | 161 |
| HaeIII | GGCC | 3 cut(s) | 236, 309, 1616 |
| HapII | CCGG | 1 cut(s) | 1346 |
| HgaI | GACGC | 1 cut(s) | 123 |
| Hin1II | CATG | 8 cut(s) | 362, 385, 636, 855, 1537, 1579, 1621, 1631 |
| HindIII | AAGCTT | 4 cut(s) | 18, 368, 959, 1564 |
| HinfI | GANTC | 8 cut(s) | 100, 407, 682, 713, 925, 944, 1403, 1579 |
| HpaII | CCGG | 1 cut(s) | 1346 |
| HphI | GGTGA | 1 cut(s) | 304 |
| Hpy166II | GTNNAC | 2 cut(s) | 630, 857 |
| Hpy188I | TCNGA | 3 cut(s) | 605, 1192, 1252 |
| Hpy188III | TCNNGA | 8 cut(s) | 178, 349, 842, 1260, 1328, 1389, 1576, 1628 |
| Hpy8I | GTNNAC | 2 cut(s) | 630, 857 |
| HpyAV | CCTTC | 3 cut(s) | 464, 525, 875 |
| HpyCH4III | ACNGT | 3 cut(s) | 378, 728, 1424 |
| HpyCH4IV | ACGT | 2 cut(s) | 250, 1678 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 80, 533, 1563 |
| HpyF3I | CTNAG | 7 cut(s) | 79, 387, 602, 648, 686, 1191, 1607 |
| HpySE526I | ACGT | 2 cut(s) | 250, 1678 |
| Hsp92II | CATG | 8 cut(s) | 362, 385, 636, 855, 1537, 1579, 1621, 1631 |
| Kzo9I | GATC | 3 cut(s) | 180, 1187, 1572 |
| LguI | GCTCTTC | 1 cut(s) | 1176 |
| Lsp1109I | GCAGC | 4 cut(s) | 757, 1044, 1505, 1676 |
| LweI | GCATC | 3 cut(s) | 92, 757, 1256 |
| MabI | ACCWGGT | 1 cut(s) | 814 |
| MaeI | CTAG | 3 cut(s) | 570, 1328, 1389 |
| MaeII | ACGT | 2 cut(s) | 250, 1678 |
| MaeIII | GTNAC | 2 cut(s) | 1456, 1541 |
| MalI | GATC | 3 cut(s) | 182, 1189, 1574 |
| MboI | GATC | 3 cut(s) | 180, 1187, 1572 |
| MboII | GAAGA | 8 cut(s) | 217, 919, 1193, 1239, 1319, 1404, 1520, 1654 |
| MfeI | CAATTG | 1 cut(s) | 948 |
| MlyI | GAGTC | 1 cut(s) | 934 |
| MmeI | TCCRAC | 1 cut(s) | 313 |
| Mph1103I | ATGCAT | 3 cut(s) | 538, 1159, 1693 |
| MroXI | GAANNNNTTC | 2 cut(s) | 681, 1095 |
| MseI | TTAA | 5 cut(s) | 425, 543, 954, 1002, 1211 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1276 |
| MspI | CCGG | 1 cut(s) | 1346 |
| MspR9I | CCNGG | 1 cut(s) | 816 |
| MunI | CAATTG | 1 cut(s) | 948 |
| Mva1269I | GAATGC | 1 cut(s) | 1691 |
| MvaI | CCWGG | 1 cut(s) | 816 |
| MvnI | CGCG | 1 cut(s) | 1584 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 80, 533, 1563 |
| NdeII | GATC | 3 cut(s) | 180, 1187, 1572 |
| NlaIII | CATG | 8 cut(s) | 362, 385, 636, 855, 1537, 1579, 1621, 1631 |
| NlaIV | GGNNCC | 2 cut(s) | 126, 813 |
| NmuCI | GTSAC | 2 cut(s) | 1456, 1541 |
| NsiI | ATGCAT | 3 cut(s) | 538, 1159, 1693 |
| NspI | RCATGY | 1 cut(s) | 855 |
| NspV | TTCGAA | 1 cut(s) | 255 |
| PagI | TCATGA | 2 cut(s) | 1575, 1627 |
| PciSI | GCTCTTC | 1 cut(s) | 1176 |
| PctI | GAATGC | 1 cut(s) | 1691 |
| PdmI | GAANNNNTTC | 2 cut(s) | 681, 1095 |
| PfeI | GAWTC | 7 cut(s) | 100, 407, 682, 713, 944, 1403, 1579 |
| PkrI | GCNGC | 6 cut(s) | 772, 988, 1059, 1283, 1495, 1666 |
| PleI | GAGTC | 1 cut(s) | 933 |
| PpsI | GAGTC | 1 cut(s) | 933 |
| PsiI | TTATAA | 2 cut(s) | 1223, 1674 |
| Psp1406I | AACGTT | 1 cut(s) | 1678 |
| Psp6I | CCWGG | 1 cut(s) | 814 |
| PspGI | CCWGG | 1 cut(s) | 814 |
| PspN4I | GGNNCC | 2 cut(s) | 126, 813 |
| PspPI | GGNCC | 1 cut(s) | 234 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 817, 849 |
| PstI | CTGCAG | 2 cut(s) | 1062, 1666 |
| RsaI | GTAC | 5 cut(s) | 40, 375, 403, 826, 1473 |
| RsaNI | GTAC | 5 cut(s) | 39, 374, 402, 825, 1472 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1276 |
| SapI | GCTCTTC | 1 cut(s) | 1176 |
| SaqAI | TTAA | 5 cut(s) | 425, 543, 954, 1002, 1211 |
| SatI | GCNGC | 6 cut(s) | 771, 987, 1058, 1282, 1494, 1665 |
| Sau3AI | GATC | 3 cut(s) | 180, 1187, 1572 |
| Sau96I | GGNCC | 1 cut(s) | 234 |
| ScaI | AGTACT | 2 cut(s) | 40, 826 |
| SchI | GAGTC | 1 cut(s) | 934 |
| ScrFI | CCNGG | 1 cut(s) | 816 |
| SexAI | ACCWGGT | 1 cut(s) | 814 |
| SfaNI | GCATC | 3 cut(s) | 92, 757, 1256 |
| SfcI | CTRYAG | 2 cut(s) | 1058, 1662 |
| SfuI | TTCGAA | 1 cut(s) | 255 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1276 |
| SsiI | CCGC | 4 cut(s) | 321, 986, 1281, 1584 |
| SspMI | CTAG | 3 cut(s) | 570, 1328, 1389 |
| StyD4I | CCNGG | 1 cut(s) | 814 |
| TaaI | ACNGT | 3 cut(s) | 378, 728, 1424 |
| TaiI | ACGT | 2 cut(s) | 253, 1681 |
| TaqI | TCGA | 3 cut(s) | 98, 255, 1203 |
| TatI | WGTACW | 4 cut(s) | 38, 373, 824, 1471 |
| TauI | GCSGC | 2 cut(s) | 989, 1284 |
| TfiI | GAWTC | 7 cut(s) | 100, 407, 682, 713, 944, 1403, 1579 |
| Tru1I | TTAA | 5 cut(s) | 425, 543, 954, 1002, 1211 |
| Tru9I | TTAA | 5 cut(s) | 425, 543, 954, 1002, 1211 |
| TscAI | CASTG | 4 cut(s) | 281, 733, 1521, 1564 |
| TseFI | GTSAC | 2 cut(s) | 1456, 1541 |
| TseI | GCWGC | 4 cut(s) | 770, 1057, 1493, 1664 |
| Tsp45I | GTSAC | 2 cut(s) | 1456, 1541 |
| TspDTI | ATGAA | 3 cut(s) | 1616, 1634, 1647 |
| TspGWI | ACGGA | 1 cut(s) | 1411 |
| TspRI | CASTG | 4 cut(s) | 281, 733, 1521, 1564 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1175 |
| XapI | RAATTY | 4 cut(s) | 671, 760, 1318, 1623 |
| XbaI | TCTAGA | 2 cut(s) | 1327, 1388 |
| XceI | RCATGY | 1 cut(s) | 855 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 331 |
| XmnI | GAANNNNTTC | 2 cut(s) | 681, 1095 |
| XspI | CTAG | 3 cut(s) | 570, 1328, 1389 |
| ZrmI | AGTACT | 2 cut(s) | 40, 826 |
| Zsp2I | ATGCAT | 3 cut(s) | 538, 1159, 1693 |