Rroxscaffold_1G00072060

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
93238168 .. 93240662
2495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00072060.1

Sequence Viewer

Length: 1812 bp
ATGGACTTGGAATTATGTGGGTCAGCATCATCTTTCTCATATCCTCAGAGGCTTGCAACCTTTTTTCAATCTCTTGCTGGTGTAACAAAACCACTTCAAACACCAAATGCTTCTTCTTCTTCTTCGCAAAGCTTATTCCACAACTTCCAGTACGTCCCTCACTTGGAGAACCCAAATCAAACAAGCTCACTTAGCCTCCCAAATCTCCTCGATTCTCTTACAGAGACGCAACTGGGTTCCACTCCTCCAAAACCTCAACCCCCCAAACTAAACCCTCCTCTGTTTCTCCAGATCATCCACAAAACCCAGAGCAACCCACAACTCTCTTTGGATTTCTTCAACTGGGCCAAGTCCAATTTACGTTTCGAACCAGACCTCAAATCCCACTGCCAAATCATCCAACTCTCACTCGGGTCTGGCCTCACCCGACCCGCCAAACCCATCTTGGACACACTAATCCAGACCCATCATGTTTCCAAGCTTGTACAGTCCATGTCTCAGGCTTGTAAAGGTACAGATTCTCTATCCAATGTGTTAAGTTTCGTGCTTGGTTGCTACGCAAGAAAGGGTTTGGTTAGAGAGGGCATAGAGGTTTATAGAGAAATGAGTGTTCTTCGTTGTGTGCCTTCAGTTTTAGCCTGCAATGCATTGCTTAATGCAATGAGGCAAGAAAATGAGACTAGATTGGGTTGGTGTTTCTATGGGGTTATGATCAGAAATGGGGTTTCACCAGACCAGTTTACATGGTCTCTGGTTGCTCAGTTTCTTTGTAAAGATGGGAAATTTGAAAGGATTCTTAGACTTTTGGATTTGGGTGTTTGTGATTCTATGTTTTATAGTCTTCTTGTGGATGGTTATAGCAAAAGTGGGAATTTTGATGCTGCATTTTGCTACTTGGAGAAAATGAGTGATGGGAAATTGGAACCTGGTTTTAGTACTTATAGTTCTGTTCTTGATGGGGCATGTAAACTTGGGGATGTGGAAGTGGTTGAAAGGGTACTGAGGATTATGGTGGAGAAGAAATCGCTTTCGGCGAGTCCTGTTTTTGAGTATGATTCAATTGTTAAGAAGCTTTGTGCTTTGGACAAAACTTATGCGGCAGAGATGTTCTTTAAGAAAGCGTGTGATGAGAAAATTGAATTGCAAGGTGCTACTTATGGATGTATGCTGCAGACATTGACTAAAGAAATGAGAATAGTGGAAGCTATTCGGGTTTATAGGGTGGTTTGTGAGAGGGGTATTGTAGTGGAGGATGGTAGTTATTATGCATTTGCTAATGTCCTTTGCAAGGAAGAGCGATCTGAGGAGGGTTTCGAGTTGTTAATGGATGTTATAAGAAGAGGGTTTAGTCCTTGTGCGTCAGAATTGTCTGGATTTATATCATTTCTATGTGGTAGGCGTAGATGGAGAGAAGCAGAAGATGTGTTGAATTCAGTTCTAGACAAAGGGCTACTACCGGATTTGACTTCTTGTTCTTCATTAGTAGGACATTACTGCTCTAGAAGACGGATTGATTCAGCTATGGCATTGCACGGTAAGATAGAAAAACTGAACGGCAGTTTGGATGTGACAACTTACAATGTACTTCTTGGTGGGCTTTTTGCAGCGAGGAGAATTGAAGAAGCAGTGAGAGTGTTTGATTACATGAGAAGTCACAACTTGATGAGCAGTGAAAGCTTTACGATCATGATTCGTGGGCTTTGTCAAGTAAAGGAACTGAGAAAGGCCATGAAAATTCATGATGAAATGTTGAAGATGGGACTTAAGCCTCCTGCAGCAACTTATAAACGTTTGATATATGCATTCAAGTAA

Protein Analysis

603

Amino Acids

67.64

Weight (kDa)

8.44

Isoelectric Point (pI)

51.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 209 - 258 8.3e-07 PPR repeat family
PPR_2 PF13041 276 - 323 1.9e-07 PPR repeat family
PPR_2 PF13041 486 - 533 5.5e-06 PPR repeat family
PPR_2 PF13041 522 - 569 3.3e-11 PPR repeat family
PPR_2 PF13041 558 - 602 1.3e-08 PPR repeat family
PPR PF01535 559 - 588 3.5e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21170
fragaria_vesca FvH4_3g02620
malus_domestica MD00G1180200.v1.1
prunus_persica Prupe.4G025500_v2.0.a1
pyrus_communis pycom05g31090
rosa_chinensis RchiOBHm_Chr5g0003911
rosa_laevigata RLG00000031187
rosa_multiflora Rmu_sc0011733.1_g000003 Rmu_sc0019391.1_g000005
rosa_roxburghii Rroxscaffold_1G00072060
rosa_rugosa Rorug04G0407800
rosa_samantha Rh5CG037900 Rh5DG034100
rosa_wichuraiana Rw5G003240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1334, 1785
AciI CCGC 2 cut(s) 432, 1097
AclI AACGTT 1 cut(s) 1789
AcsI RAATTY 4 cut(s) 782, 871, 1429, 1734
AcuI CTGAAG 1 cut(s) 612
AfaI GTAC 6 cut(s) 152, 486, 514, 937, 999, 1584
AfiI CCNNNNNNNGG 2 cut(s) 163, 1288
AflII CTTAAG 1 cut(s) 1763
AjnI CCWGG 1 cut(s) 925
AjuI GAANNNNNNNTTGG 6 cut(s) 97, 129, 347, 379, 1544, 1576
AluBI AGCT 7 cut(s) 132, 186, 481, 1072, 1205, 1520, 1677
AluI AGCT 7 cut(s) 132, 186, 481, 1072, 1205, 1520, 1677
Alw26I GTCTC 4 cut(s) 218, 501, 671, 753
Ama87I CYCGRG 1 cut(s) 410
AoxI GGCC 3 cut(s) 345, 418, 1725
ApeKI GCWGC 4 cut(s) 881, 1168, 1604, 1775
ApoI RAATTY 4 cut(s) 782, 871, 1429, 1734
Asp700I GAANNNNTTC 2 cut(s) 792, 1206
AspS9I GGNCC 1 cut(s) 345
AsuHPI GGTGA 2 cut(s) 415, 720
AsuII TTCGAA 1 cut(s) 366
AvaI CYCGRG 1 cut(s) 410
BbsI GAAGAC 2 cut(s) 833, 1510
BbvI GCAGC 4 cut(s) 868, 1155, 1616, 1787
BccI CCATC 9 cut(s) 449, 474, 770, 845, 905, 950, 1247, 1398, 1750
BceAI ACGGC 1 cut(s) 1570
BciT130I CCWGG 1 cut(s) 927
BclI TGATCA 1 cut(s) 711
BcoDI GTCTC 4 cut(s) 218, 501, 671, 753
BfaI CTAG 3 cut(s) 681, 1439, 1500
BfmI CTRYAG 2 cut(s) 1169, 1773
BfrI CTTAAG 1 cut(s) 1763
BisI GCNGC 5 cut(s) 882, 1098, 1169, 1605, 1776
BlsI GCNGC 5 cut(s) 883, 1099, 1170, 1606, 1777
BmcAI AGTACT 1 cut(s) 937
Bme1390I CCNGG 1 cut(s) 927
BmeT110I CYCGRG 1 cut(s) 410
BmgT120I GGNCC 1 cut(s) 345
BmiI GGNNCC 2 cut(s) 238, 924
BmrFI CCNGG 1 cut(s) 927
BmrI ACTGGG 2 cut(s) 242, 352
BmsI GCATC 2 cut(s) 35, 868
BmuI ACTGGG 2 cut(s) 242, 352
BpiI GAAGAC 2 cut(s) 833, 1510
BpmI CTGGAG 1 cut(s) 272
Bpu14I TTCGAA 1 cut(s) 366
BsaBI GATNNNNATC 1 cut(s) 1378
BsaI GGTCTC 1 cut(s) 753
BsaWI WCCGGW 1 cut(s) 1456
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 1288
Bse1I ACTGG 4 cut(s) 148, 237, 347, 736
Bse3DI GCAATG 4 cut(s) 647, 649, 666, 1526
Bse8I GATNNNNATC 1 cut(s) 1378
BseBI CCWGG 1 cut(s) 927
BseGI GGATG 8 cut(s) 294, 396, 856, 982, 1166, 1258, 1333, 1570
BseJI GATNNNNATC 1 cut(s) 1378
BseLI CCNNNNNNNGG 2 cut(s) 163, 1288
BseMI GCAATG 4 cut(s) 647, 649, 666, 1526
BseMII CTCAG 6 cut(s) 59, 512, 773, 992, 1293, 1709
BseNI ACTGG 4 cut(s) 148, 237, 347, 736
BseRI GAGGAG 5 cut(s) 197, 234, 267, 1319, 1624
BseXI GCAGC 4 cut(s) 868, 1155, 1616, 1787
BshFI GGCC 3 cut(s) 347, 420, 1727
BsiHKCI CYCGRG 1 cut(s) 410
BsiSI CCGG 1 cut(s) 1457
BslFI GGGAC 2 cut(s) 140, 1773
BslI CCNNNNNNNGG 2 cut(s) 163, 1288
BsmAI GTCTC 4 cut(s) 218, 501, 671, 753
BsmBI CGTCTC 1 cut(s) 218
BsmFI GGGAC 2 cut(s) 140, 1773
BsmI GAATGC 1 cut(s) 1802
BsnI GGCC 3 cut(s) 347, 420, 1727
Bso31I GGTCTC 1 cut(s) 753
BsoBI CYCGRG 1 cut(s) 410
Bsp119I TTCGAA 1 cut(s) 366
Bsp1407I TGTACA 1 cut(s) 484
Bsp143I GATC 4 cut(s) 291, 711, 1298, 1683
BspACI CCGC 2 cut(s) 432, 1097
BspANI GGCC 3 cut(s) 347, 420, 1727
BspCNI CTCAG 6 cut(s) 58, 511, 772, 993, 1294, 1710
BspHI TCATGA 2 cut(s) 1686, 1738
BspLI GGNNCC 2 cut(s) 238, 924
BspMAI CTGCAG 2 cut(s) 1173, 1777
BspQI GCTCTTC 1 cut(s) 1287
BspT104I TTCGAA 1 cut(s) 366
BspTI CTTAAG 1 cut(s) 1763
BspTNI GGTCTC 1 cut(s) 753
BsrDI GCAATG 4 cut(s) 647, 649, 666, 1526
BsrGI TGTACA 1 cut(s) 484
BsrI ACTGG 4 cut(s) 148, 237, 347, 736
BssMI GATC 4 cut(s) 291, 711, 1298, 1683
Bst2UI CCWGG 1 cut(s) 927
Bst4CI ACNGT 2 cut(s) 489, 1535
Bst6I CTCTTC 2 cut(s) 1287, 1333
BstAFI CTTAAG 1 cut(s) 1763
BstAUI TGTACA 1 cut(s) 484
BstBI TTCGAA 1 cut(s) 366
BstC8I GCNNGC 2 cut(s) 54, 640
BstDEI CTNAG 8 cut(s) 45, 191, 498, 759, 797, 1001, 1302, 1718
BstENI CCTNNNNNAGG 1 cut(s) 1286
BstF5I GGATG 8 cut(s) 294, 396, 856, 982, 1166, 1258, 1333, 1570
BstKTI GATC 4 cut(s) 294, 714, 1301, 1686
BstMAI GTCTC 4 cut(s) 218, 501, 671, 753
BstMBI GATC 4 cut(s) 291, 711, 1298, 1683
BstMWI GCNNNNNNNGC 3 cut(s) 192, 644, 1674
BstNI CCWGG 1 cut(s) 927
BstNSI RCATGY 1 cut(s) 966
BstSCI CCNGG 1 cut(s) 925
BstSFI CTRYAG 2 cut(s) 1169, 1773
BstV1I GCAGC 4 cut(s) 868, 1155, 1616, 1787
BstV2I GAAGAC 2 cut(s) 833, 1510
BsuRI GGCC 3 cut(s) 347, 420, 1727
BtsCI GGATG 8 cut(s) 294, 396, 856, 982, 1166, 1258, 1333, 1570
BtsI GCAGTG 3 cut(s) 385, 1632, 1675
BtsIMutI CAGTG 3 cut(s) 385, 1632, 1675
Cac8I GCNNGC 2 cut(s) 54, 640
CciI TCATGA 2 cut(s) 1686, 1738
Cfr13I GGNCC 1 cut(s) 345
CseI GACGC 2 cut(s) 235, 1347
CsiI ACCWGGT 1 cut(s) 925
Csp6I GTAC 6 cut(s) 151, 485, 513, 936, 998, 1583
CviAII CATG 8 cut(s) 470, 493, 744, 963, 1645, 1687, 1729, 1739
CviQI GTAC 6 cut(s) 151, 485, 513, 936, 998, 1583
DdeI CTNAG 8 cut(s) 45, 191, 498, 759, 797, 1001, 1302, 1718
DpnI GATC 4 cut(s) 293, 713, 1300, 1685
DpnII GATC 4 cut(s) 291, 711, 1298, 1683
Eam1104I CTCTTC 2 cut(s) 1287, 1333
EarI CTCTTC 2 cut(s) 1287, 1333
Eco31I GGTCTC 1 cut(s) 753
Eco57I CTGAAG 1 cut(s) 612
Eco88I CYCGRG 1 cut(s) 410
EcoNI CCTNNNNNAGG 1 cut(s) 1286
EcoRI GAATTC 1 cut(s) 1429
EcoRII CCWGG 1 cut(s) 925
EcoT22I ATGCAT 3 cut(s) 649, 1270, 1804
Esp3I CGTCTC 1 cut(s) 218
FaeI CATG 8 cut(s) 473, 496, 747, 966, 1648, 1690, 1732, 1742
FaqI GGGAC 2 cut(s) 140, 1773
FatI CATG 8 cut(s) 469, 492, 743, 962, 1644, 1686, 1728, 1738
FauI CCCGC 1 cut(s) 439
FbaI TGATCA 1 cut(s) 711
Fnu4HI GCNGC 5 cut(s) 882, 1098, 1169, 1605, 1776
FokI GGATG 8 cut(s) 281, 383, 863, 989, 1173, 1265, 1340, 1577
Fsp4HI GCNGC 5 cut(s) 882, 1098, 1169, 1605, 1776
FspBI CTAG 3 cut(s) 681, 1439, 1500
GluI GCNGC 5 cut(s) 882, 1098, 1169, 1605, 1776
GsuI CTGGAG 1 cut(s) 272
HaeIII GGCC 3 cut(s) 347, 420, 1727
HapII CCGG 1 cut(s) 1457
HgaI GACGC 2 cut(s) 235, 1347
Hin1II CATG 8 cut(s) 473, 496, 747, 966, 1648, 1690, 1732, 1742
HindIII AAGCTT 4 cut(s) 130, 479, 1070, 1675
HinfI GANTC 8 cut(s) 212, 518, 793, 824, 1036, 1055, 1514, 1690
HpaII CCGG 1 cut(s) 1457
HphI GGTGA 2 cut(s) 415, 720
Hpy166II GTNNAC 2 cut(s) 741, 968
Hpy188I TCNGA 4 cut(s) 48, 716, 1303, 1363
Hpy188III TCNNGA 8 cut(s) 289, 460, 953, 1371, 1439, 1500, 1687, 1739
Hpy8I GTNNAC 2 cut(s) 741, 968
HpyAV CCTTC 1 cut(s) 636
HpyCH4III ACNGT 2 cut(s) 489, 1535
HpyCH4IV ACGT 3 cut(s) 153, 361, 1789
HpyF10VI GCNNNNNNNGC 3 cut(s) 192, 644, 1674
HpyF3I CTNAG 8 cut(s) 45, 191, 498, 759, 797, 1001, 1302, 1718
HpySE526I ACGT 3 cut(s) 153, 361, 1789
Hsp92II CATG 8 cut(s) 473, 496, 747, 966, 1648, 1690, 1732, 1742
Ksp22I TGATCA 1 cut(s) 711
Kzo9I GATC 4 cut(s) 291, 711, 1298, 1683
LguI GCTCTTC 1 cut(s) 1287
Lsp1109I GCAGC 4 cut(s) 868, 1155, 1616, 1787
LweI GCATC 2 cut(s) 35, 868
MabI ACCWGGT 1 cut(s) 925
MaeI CTAG 3 cut(s) 681, 1439, 1500
MaeII ACGT 3 cut(s) 153, 361, 1789
MaeIII GTNAC 3 cut(s) 82, 1567, 1652
MalI GATC 4 cut(s) 293, 713, 1300, 1685
MboI GATC 4 cut(s) 291, 711, 1298, 1683
MfeI CAATTG 1 cut(s) 1059
MlyI GAGTC 1 cut(s) 1045
MmeI TCCRAC 1 cut(s) 424
Mph1103I ATGCAT 3 cut(s) 649, 1270, 1804
MroXI GAANNNNTTC 2 cut(s) 792, 1206
MseI TTAA 6 cut(s) 536, 654, 1065, 1113, 1322, 1764
MslI CAYNNNNRTG 1 cut(s) 1387
MspCI CTTAAG 1 cut(s) 1763
MspI CCGG 1 cut(s) 1457
MspR9I CCNGG 1 cut(s) 927
MunI CAATTG 1 cut(s) 1059
Mva1269I GAATGC 1 cut(s) 1802
MvaI CCWGG 1 cut(s) 927
MwoI GCNNNNNNNGC 3 cut(s) 192, 644, 1674
NdeII GATC 4 cut(s) 291, 711, 1298, 1683
NlaIII CATG 8 cut(s) 473, 496, 747, 966, 1648, 1690, 1732, 1742
NlaIV GGNNCC 2 cut(s) 238, 924
NmuCI GTSAC 2 cut(s) 1567, 1652
NsiI ATGCAT 3 cut(s) 649, 1270, 1804
NspI RCATGY 1 cut(s) 966
NspV TTCGAA 1 cut(s) 366
PagI TCATGA 2 cut(s) 1686, 1738
PciSI GCTCTTC 1 cut(s) 1287
PcsI WCGNNNNNNNCGW 1 cut(s) 1031
PctI GAATGC 1 cut(s) 1802
PdmI GAANNNNTTC 2 cut(s) 792, 1206
PfeI GAWTC 7 cut(s) 212, 518, 793, 824, 1055, 1514, 1690
PkrI GCNGC 5 cut(s) 883, 1099, 1170, 1606, 1777
PleI GAGTC 1 cut(s) 1044
PpsI GAGTC 1 cut(s) 1044
PsiI TTATAA 2 cut(s) 1334, 1785
Psp1406I AACGTT 1 cut(s) 1789
Psp6I CCWGG 1 cut(s) 925
PspGI CCWGG 1 cut(s) 925
PspN4I GGNNCC 2 cut(s) 238, 924
PspPI GGNCC 1 cut(s) 345
PsrI GAACNNNNNNTAC 2 cut(s) 928, 960
PstI CTGCAG 2 cut(s) 1173, 1777
RsaI GTAC 6 cut(s) 152, 486, 514, 937, 999, 1584
RsaNI GTAC 6 cut(s) 151, 485, 513, 936, 998, 1583
RseI CAYNNNNRTG 1 cut(s) 1387
SapI GCTCTTC 1 cut(s) 1287
SaqAI TTAA 6 cut(s) 536, 654, 1065, 1113, 1322, 1764
SatI GCNGC 5 cut(s) 882, 1098, 1169, 1605, 1776
Sau3AI GATC 4 cut(s) 291, 711, 1298, 1683
Sau96I GGNCC 1 cut(s) 345
ScaI AGTACT 1 cut(s) 937
SchI GAGTC 1 cut(s) 1045
ScrFI CCNGG 1 cut(s) 927
SexAI ACCWGGT 1 cut(s) 925
SfaNI GCATC 2 cut(s) 35, 868
SfcI CTRYAG 2 cut(s) 1169, 1773
SfuI TTCGAA 1 cut(s) 366
SmiMI CAYNNNNRTG 1 cut(s) 1387
SmlI CTYRAG 1 cut(s) 1763
SmoI CTYRAG 1 cut(s) 1763
SsiI CCGC 2 cut(s) 432, 1097
SspMI CTAG 3 cut(s) 681, 1439, 1500
StyD4I CCNGG 1 cut(s) 925
TaaI ACNGT 2 cut(s) 489, 1535
TaiI ACGT 3 cut(s) 156, 364, 1792
TaqI TCGA 3 cut(s) 210, 366, 1314
TatI WGTACW 3 cut(s) 484, 935, 1582
TauI GCSGC 1 cut(s) 1100
TfiI GAWTC 7 cut(s) 212, 518, 793, 824, 1055, 1514, 1690
Tru1I TTAA 6 cut(s) 536, 654, 1065, 1113, 1322, 1764
Tru9I TTAA 6 cut(s) 536, 654, 1065, 1113, 1322, 1764
TscAI CASTG 3 cut(s) 392, 1632, 1675
TseFI GTSAC 2 cut(s) 1567, 1652
TseI GCWGC 4 cut(s) 881, 1168, 1604, 1775
Tsp45I GTSAC 2 cut(s) 1567, 1652
TspDTI ATGAA 4 cut(s) 1467, 1727, 1745, 1758
TspGWI ACGGA 1 cut(s) 1522
TspRI CASTG 3 cut(s) 392, 1632, 1675
Vha464I CTTAAG 1 cut(s) 1763
XagI CCTNNNNNAGG 1 cut(s) 1286
XapI RAATTY 4 cut(s) 782, 871, 1429, 1734
XbaI TCTAGA 2 cut(s) 1438, 1499
XceI RCATGY 1 cut(s) 966
XcmI CCANNNNNNNNNTGG 1 cut(s) 442
XmnI GAANNNNTTC 2 cut(s) 792, 1206
XspI CTAG 3 cut(s) 681, 1439, 1500
ZrmI AGTACT 1 cut(s) 937
Zsp2I ATGCAT 3 cut(s) 649, 1270, 1804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.