Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011733.1

Orthogroup ID

OG0016541

Physical Location & Seq

Genomic Coordinates Forward (+)

7083 .. 8792

Gene Structure 1710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011733.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1710 bp

atgcttcttcttcttcttcttcgcaaagcttattccacaacttccagtacttccctaacttggagaacccaaatcaaacaagctcacttagcatcccaaatctcctcgattctcttacagagacgcaactgggttccactcctccaaaacctcaacctccccaaactaaaccctcctctgtttctccaaatcatccacaaaacccagaacaacccacaactctctttggatttcttcaactgggccaagtccaatttacgtttcgaaccagacctcaaatcccactgccaaatcatccaactctcactcgggtctggcctcacccgacccgccaaacccatcttggacacactaatccagacccatcatgtttccaagcttgtacagtccatgtctcaggcttgtaaaggtacagattctctatccaatgtgttaagttttgtgcttggttgctatgcaagaaagggtttggttagagaaggcatagaggtttatagagaaatgagtgttcttggttgtgtgccttcagttttagcctgcaatgcattgcttaatgctatgaggcaaggaaatgaaactagaatgggttggtgtttctatggggttatgatcagaaatgaggttttaccagaccagtttacatggtctctggttgctcagtttctttgtaaagatgggaaatttgaaaggattcttagacttttggatttgggtgtttgtgattctatgttttatagtcttcttgtggatggttatagcaaaagtgggaattttgatgctgcattttgctacttggagaaaatgagtgatgggaaattggaacctggttttagtacttatagttctgttcttgatggggcatgtaaacttggggatgtggaagtggttgaaagggtaatgaggattatggtggagaagaaattgctttcggcgagtcctgtttttgagtatgattcaattgttaagaagctttgtgctttggacaaaacttatgcggcagagatgttctttaagaaagcgtgtgatgagaaaattgaattgcaaggtgctacttatggatgtatgctgcaggcattgactaaagaaatgagaatagtggaagctattcgggtttatcgggtggtttgtgagaggggtatggtagtggatgatagcagttattatgcatttgctaatgttctatgcaaggaagagcgatctgaggagggtttcgagttgttaatggatgttataagaagagggtttagtccttgtgcatcagaattgtctggatttatatcatttctatgtggcaggcgtagatggagcgaagcagaagatgtgttgaattcagttctagacaaagggctactaccggatttgacttcttgttcttcattagtagggcattactgctctagaagacggattgattcagctatggcattgcacggtaagatggaaaaactgaacggcagtttggatgtgaccacttacaatgtacttcttggtgggctttttgcagcgaggagaattgaagaagcagtgagagtgtttgattacatgagaagtcacaacttgatgggcagtgaaagctttacgatcatgattcgcgggctttgtcaagtaaaggaactgagaaaggccatgaaaattcatgatgaaatgttgaagatgggacttaagcctcctgcagcaacttataaacgtttgatatatgcattcaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009536 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

569

Amino Acids

64.3

Weight (kDa)

8.85

Isoelectric Point (pI)

48.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016541)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21170
fragaria_vesca	FvH4_3g02620
malus_domestica	MD00G1180200.v1.1
prunus_persica	Prupe.4G025500_v2.0.a1
pyrus_communis	pycom05g31090
rosa_chinensis	RchiOBHm_Chr5g0003911
rosa_laevigata	RLG00000031187
rosa_multiflora	Rmu_sc0011733.1_g000003 Rmu_sc0019391.1_g000005
rosa_roxburghii	Rroxscaffold_1G00072060
rosa_rugosa	Rorug04G0407800
rosa_samantha	Rh5CG037900 Rh5DG034100
rosa_wichuraiana	Rw5G003240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1232, 1683
AccII	CGCG	1 cut(s)	1593
AciI	CCGC	3 cut(s)	330, 995, 1593
AclI	AACGTT	1 cut(s)	1687
AcsI	RAATTY	4 cut(s)	680, 769, 1327, 1632
AcuI	CTGAAG	1 cut(s)	510
AfaI	GTAC	5 cut(s)	49, 384, 412, 835, 1482
AfiI	CCNNNNNNNGG	1 cut(s)	60
AflII	CTTAAG	1 cut(s)	1661
AgsI	TTSAA	9 cut(s)	238, 686, 890, 957, 1037, 1327, 1517, 1651, 1705
AjnI	CCWGG	1 cut(s)	823
AjuI	GAANNNNNNNTTGG	4 cut(s)	245, 277, 1442, 1474
AluBI	AGCT	7 cut(s)	29, 83, 379, 970, 1103, 1418, 1575
AluI	AGCT	7 cut(s)	29, 83, 379, 970, 1103, 1418, 1575
Alw26I	GTCTC	3 cut(s)	115, 399, 651
Ama87I	CYCGRG	1 cut(s)	308
AoxI	GGCC	3 cut(s)	243, 316, 1623
ApeKI	GCWGC	4 cut(s)	779, 1066, 1502, 1673
ApoI	RAATTY	4 cut(s)	680, 769, 1327, 1632
Asp700I	GAANNNNTTC	2 cut(s)	690, 1104
AspS9I	GGNCC	1 cut(s)	243
AsuHPI	GGTGA	1 cut(s)	313
AsuII	TTCGAA	1 cut(s)	264
AvaI	CYCGRG	1 cut(s)	308
BbsI	GAAGAC	2 cut(s)	731, 1408
BbvI	GCAGC	4 cut(s)	766, 1053, 1514, 1685
BceAI	ACGGC	1 cut(s)	1468
BciT130I	CCWGG	1 cut(s)	825
BclI	TGATCA	1 cut(s)	609
BcoDI	GTCTC	3 cut(s)	115, 399, 651
BfaI	CTAG	3 cut(s)	579, 1337, 1398
BfmI	CTRYAG	2 cut(s)	1067, 1671
BfrI	CTTAAG	1 cut(s)	1661
BisI	GCNGC	5 cut(s)	780, 996, 1067, 1503, 1674
BlsI	GCNGC	5 cut(s)	781, 997, 1068, 1504, 1675
BmcAI	AGTACT	2 cut(s)	49, 835
Bme1390I	CCNGG	1 cut(s)	825
BmeT110I	CYCGRG	1 cut(s)	308
BmgT120I	GGNCC	1 cut(s)	243
BmiI	GGNNCC	2 cut(s)	135, 822
BmrFI	CCNGG	1 cut(s)	825
BmrI	ACTGGG	2 cut(s)	139, 250
BmsI	GCATC	3 cut(s)	101, 766, 1265
BmuI	ACTGGG	2 cut(s)	139, 250
BpiI	GAAGAC	2 cut(s)	731, 1408
Bpu14I	TTCGAA	1 cut(s)	264
BsaBI	GATNNNNATC	1 cut(s)	1276
BsaI	GGTCTC	1 cut(s)	651
BsaWI	WCCGGW	1 cut(s)	1354
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
Bse1I	ACTGG	4 cut(s)	45, 134, 245, 634
Bse3DI	GCAATG	3 cut(s)	545, 547, 1424
Bse8I	GATNNNNATC	1 cut(s)	1276
BseBI	CCWGG	1 cut(s)	825
BseGI	GGATG	9 cut(s)	92, 192, 294, 754, 880, 1064, 1153, 1231, 1468
BseJI	GATNNNNATC	1 cut(s)	1276
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseMI	GCAATG	3 cut(s)	545, 547, 1424
BseMII	CTCAG	4 cut(s)	410, 671, 1191, 1607
BseNI	ACTGG	4 cut(s)	45, 134, 245, 634
BseRI	GAGGAG	5 cut(s)	94, 131, 165, 1217, 1522
BseXI	GCAGC	4 cut(s)	766, 1053, 1514, 1685
Bsh1236I	CGCG	1 cut(s)	1593
BshFI	GGCC	3 cut(s)	245, 318, 1625
BsiHKCI	CYCGRG	1 cut(s)	308
BsiSI	CCGG	1 cut(s)	1355
BslFI	GGGAC	1 cut(s)	1671
BslI	CCNNNNNNNGG	1 cut(s)	60
BsmAI	GTCTC	3 cut(s)	115, 399, 651
BsmBI	CGTCTC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	1671
BsmI	GAATGC	1 cut(s)	1700
BsnI	GGCC	3 cut(s)	245, 318, 1625
Bso31I	GGTCTC	1 cut(s)	651
BsoBI	CYCGRG	1 cut(s)	308
Bsp119I	TTCGAA	1 cut(s)	264
Bsp1407I	TGTACA	1 cut(s)	382
Bsp143I	GATC	3 cut(s)	609, 1196, 1581
BspACI	CCGC	3 cut(s)	330, 995, 1593
BspANI	GGCC	3 cut(s)	245, 318, 1625
BspCNI	CTCAG	4 cut(s)	409, 670, 1192, 1608
BspFNI	CGCG	1 cut(s)	1593
BspHI	TCATGA	2 cut(s)	1584, 1636
BspLI	GGNNCC	2 cut(s)	135, 822
BspMAI	CTGCAG	2 cut(s)	1071, 1675
BspQI	GCTCTTC	1 cut(s)	1185
BspT104I	TTCGAA	1 cut(s)	264
BspTI	CTTAAG	1 cut(s)	1661
BspTNI	GGTCTC	1 cut(s)	651
BsrDI	GCAATG	3 cut(s)	545, 547, 1424
BsrGI	TGTACA	1 cut(s)	382
BsrI	ACTGG	4 cut(s)	45, 134, 245, 634
BssMI	GATC	3 cut(s)	609, 1196, 1581
Bst2UI	CCWGG	1 cut(s)	825
Bst4CI	ACNGT	2 cut(s)	387, 1433
Bst6I	CTCTTC	2 cut(s)	1185, 1231
BstAFI	CTTAAG	1 cut(s)	1661
BstAUI	TGTACA	1 cut(s)	382
BstBI	TTCGAA	1 cut(s)	264
BstC8I	GCNNGC	4 cut(s)	538, 1071, 1295, 1595
BstDEI	CTNAG	6 cut(s)	88, 396, 657, 695, 1200, 1616
BstF5I	GGATG	9 cut(s)	92, 192, 294, 754, 880, 1064, 1153, 1231, 1468
BstFNI	CGCG	1 cut(s)	1593
BstKTI	GATC	3 cut(s)	612, 1199, 1584
BstMAI	GTCTC	3 cut(s)	115, 399, 651
BstMBI	GATC	3 cut(s)	609, 1196, 1581
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 542, 1572
BstNI	CCWGG	1 cut(s)	825
BstNSI	RCATGY	1 cut(s)	864
BstSCI	CCNGG	1 cut(s)	823
BstSFI	CTRYAG	2 cut(s)	1067, 1671
BstUI	CGCG	1 cut(s)	1593
BstV1I	GCAGC	4 cut(s)	766, 1053, 1514, 1685
BstV2I	GAAGAC	2 cut(s)	731, 1408
BsuRI	GGCC	3 cut(s)	245, 318, 1625
BtsCI	GGATG	9 cut(s)	92, 192, 294, 754, 880, 1064, 1153, 1231, 1468
BtsI	GCAGTG	3 cut(s)	283, 1530, 1573
BtsIMutI	CAGTG	3 cut(s)	283, 1530, 1573
Cac8I	GCNNGC	4 cut(s)	538, 1071, 1295, 1595
CciI	TCATGA	2 cut(s)	1584, 1636
Cfr13I	GGNCC	1 cut(s)	243
CseI	GACGC	1 cut(s)	132
CsiI	ACCWGGT	1 cut(s)	823
Csp6I	GTAC	5 cut(s)	48, 383, 411, 834, 1481
CviAII	CATG	8 cut(s)	368, 391, 642, 861, 1543, 1585, 1627, 1637
CviQI	GTAC	5 cut(s)	48, 383, 411, 834, 1481
DdeI	CTNAG	6 cut(s)	88, 396, 657, 695, 1200, 1616
DpnI	GATC	3 cut(s)	611, 1198, 1583
DpnII	GATC	3 cut(s)	609, 1196, 1581
Eam1104I	CTCTTC	2 cut(s)	1185, 1231
EarI	CTCTTC	2 cut(s)	1185, 1231
Eco31I	GGTCTC	1 cut(s)	651
Eco57I	CTGAAG	1 cut(s)	510
Eco88I	CYCGRG	1 cut(s)	308
EcoRI	GAATTC	1 cut(s)	1327
EcoRII	CCWGG	1 cut(s)	823
EcoT22I	ATGCAT	3 cut(s)	547, 1168, 1702
Esp3I	CGTCTC	1 cut(s)	115
FaeI	CATG	8 cut(s)	371, 394, 645, 864, 1546, 1588, 1630, 1640
FaqI	GGGAC	1 cut(s)	1671
FatI	CATG	8 cut(s)	367, 390, 641, 860, 1542, 1584, 1626, 1636
FauI	CCCGC	2 cut(s)	337, 1586
FbaI	TGATCA	1 cut(s)	609
Fnu4HI	GCNGC	5 cut(s)	780, 996, 1067, 1503, 1674
FokI	GGATG	9 cut(s)	79, 179, 281, 761, 887, 1071, 1160, 1238, 1475
Fsp4HI	GCNGC	5 cut(s)	780, 996, 1067, 1503, 1674
FspBI	CTAG	3 cut(s)	579, 1337, 1398
GluI	GCNGC	5 cut(s)	780, 996, 1067, 1503, 1674
HaeIII	GGCC	3 cut(s)	245, 318, 1625
HapII	CCGG	1 cut(s)	1355
HgaI	GACGC	1 cut(s)	132
Hin1II	CATG	8 cut(s)	371, 394, 645, 864, 1546, 1588, 1630, 1640
HindIII	AAGCTT	4 cut(s)	27, 377, 968, 1573
HinfI	GANTC	8 cut(s)	109, 416, 691, 722, 934, 953, 1412, 1588
HpaII	CCGG	1 cut(s)	1355
HphI	GGTGA	1 cut(s)	313
Hpy166II	GTNNAC	2 cut(s)	639, 866
Hpy188I	TCNGA	3 cut(s)	614, 1201, 1261
Hpy188III	TCNNGA	7 cut(s)	358, 851, 1269, 1337, 1398, 1585, 1637
Hpy8I	GTNNAC	2 cut(s)	639, 866
HpyAV	CCTTC	2 cut(s)	473, 534
HpyCH4III	ACNGT	2 cut(s)	387, 1433
HpyCH4IV	ACGT	2 cut(s)	259, 1687
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 542, 1572
HpyF3I	CTNAG	6 cut(s)	88, 396, 657, 695, 1200, 1616
HpySE526I	ACGT	2 cut(s)	259, 1687
Hsp92II	CATG	8 cut(s)	371, 394, 645, 864, 1546, 1588, 1630, 1640
Ksp22I	TGATCA	1 cut(s)	609
Kzo9I	GATC	3 cut(s)	609, 1196, 1581
LguI	GCTCTTC	1 cut(s)	1185
LmnI	GCTCC	1 cut(s)	1305
Lsp1109I	GCAGC	4 cut(s)	766, 1053, 1514, 1685
LweI	GCATC	3 cut(s)	101, 766, 1265
MabI	ACCWGGT	1 cut(s)	823
MaeI	CTAG	3 cut(s)	579, 1337, 1398
MaeII	ACGT	2 cut(s)	259, 1687
MaeIII	GTNAC	2 cut(s)	1465, 1550
MalI	GATC	3 cut(s)	611, 1198, 1583
MboI	GATC	3 cut(s)	609, 1196, 1581
MfeI	CAATTG	1 cut(s)	957
MlyI	GAGTC	1 cut(s)	943
MmeI	TCCRAC	1 cut(s)	322
Mph1103I	ATGCAT	3 cut(s)	547, 1168, 1702
MroXI	GAANNNNTTC	2 cut(s)	690, 1104
MseI	TTAA	6 cut(s)	434, 552, 963, 1011, 1220, 1662
MslI	CAYNNNNRTG	1 cut(s)	1285
MspCI	CTTAAG	1 cut(s)	1661
MspI	CCGG	1 cut(s)	1355
MspR9I	CCNGG	1 cut(s)	825
MunI	CAATTG	1 cut(s)	957
Mva1269I	GAATGC	1 cut(s)	1700
MvaI	CCWGG	1 cut(s)	825
MvnI	CGCG	1 cut(s)	1593
MwoI	GCNNNNNNNGC	3 cut(s)	89, 542, 1572
NdeII	GATC	3 cut(s)	609, 1196, 1581
NlaIII	CATG	8 cut(s)	371, 394, 645, 864, 1546, 1588, 1630, 1640
NlaIV	GGNNCC	2 cut(s)	135, 822
NmuCI	GTSAC	2 cut(s)	1465, 1550
NsiI	ATGCAT	3 cut(s)	547, 1168, 1702
NspI	RCATGY	1 cut(s)	864
NspV	TTCGAA	1 cut(s)	264
PagI	TCATGA	2 cut(s)	1584, 1636
PciSI	GCTCTTC	1 cut(s)	1185
PctI	GAATGC	1 cut(s)	1700
PdmI	GAANNNNTTC	2 cut(s)	690, 1104
PfeI	GAWTC	7 cut(s)	109, 416, 691, 722, 953, 1412, 1588
PkrI	GCNGC	5 cut(s)	781, 997, 1068, 1504, 1675
PleI	GAGTC	1 cut(s)	942
PpsI	GAGTC	1 cut(s)	942
PsiI	TTATAA	2 cut(s)	1232, 1683
Psp1406I	AACGTT	1 cut(s)	1687
Psp6I	CCWGG	1 cut(s)	823
PspGI	CCWGG	1 cut(s)	823
PspN4I	GGNNCC	2 cut(s)	135, 822
PspPI	GGNCC	1 cut(s)	243
PsrI	GAACNNNNNNTAC	2 cut(s)	826, 858
PstI	CTGCAG	2 cut(s)	1071, 1675
RsaI	GTAC	5 cut(s)	49, 384, 412, 835, 1482
RsaNI	GTAC	5 cut(s)	48, 383, 411, 834, 1481
RseI	CAYNNNNRTG	1 cut(s)	1285
SapI	GCTCTTC	1 cut(s)	1185
SaqAI	TTAA	6 cut(s)	434, 552, 963, 1011, 1220, 1662
SatI	GCNGC	5 cut(s)	780, 996, 1067, 1503, 1674
Sau3AI	GATC	3 cut(s)	609, 1196, 1581
Sau96I	GGNCC	1 cut(s)	243
ScaI	AGTACT	2 cut(s)	49, 835
SchI	GAGTC	1 cut(s)	943
ScrFI	CCNGG	1 cut(s)	825
SexAI	ACCWGGT	1 cut(s)	823
SfaNI	GCATC	3 cut(s)	101, 766, 1265
SfcI	CTRYAG	2 cut(s)	1067, 1671
SfuI	TTCGAA	1 cut(s)	264
SmiMI	CAYNNNNRTG	1 cut(s)	1285
SmlI	CTYRAG	1 cut(s)	1661
SmoI	CTYRAG	1 cut(s)	1661
SsiI	CCGC	3 cut(s)	330, 995, 1593
SspMI	CTAG	3 cut(s)	579, 1337, 1398
StyD4I	CCNGG	1 cut(s)	823
TaaI	ACNGT	2 cut(s)	387, 1433
TaiI	ACGT	2 cut(s)	262, 1690
TaqI	TCGA	3 cut(s)	107, 264, 1212
TatI	WGTACW	4 cut(s)	47, 382, 833, 1480
TauI	GCSGC	1 cut(s)	998
TfiI	GAWTC	7 cut(s)	109, 416, 691, 722, 953, 1412, 1588
Tru1I	TTAA	6 cut(s)	434, 552, 963, 1011, 1220, 1662
Tru9I	TTAA	6 cut(s)	434, 552, 963, 1011, 1220, 1662
TscAI	CASTG	3 cut(s)	290, 1530, 1573
TseFI	GTSAC	2 cut(s)	1465, 1550
TseI	GCWGC	4 cut(s)	779, 1066, 1502, 1673
Tsp45I	GTSAC	2 cut(s)	1465, 1550
TspDTI	ATGAA	5 cut(s)	588, 1365, 1625, 1643, 1656
TspGWI	ACGGA	1 cut(s)	1420
TspRI	CASTG	3 cut(s)	290, 1530, 1573
Vha464I	CTTAAG	1 cut(s)	1661
XapI	RAATTY	4 cut(s)	680, 769, 1327, 1632
XbaI	TCTAGA	2 cut(s)	1336, 1397
XceI	RCATGY	1 cut(s)	864
XcmI	CCANNNNNNNNNTGG	1 cut(s)	340
XmnI	GAANNNNTTC	2 cut(s)	690, 1104
XspI	CTAG	3 cut(s)	579, 1337, 1398
ZrmI	AGTACT	2 cut(s)	49, 835
Zsp2I	ATGCAT	3 cut(s)	547, 1168, 1702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.