Prupe.4G025500_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
1202756 .. 1204522
1767 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G025500.1

Sequence Viewer

Length: 1761 bp
ATGTTTCTTCACAAAGCTCACCAATTTCGCAGAGCGTATTCAACAGCTTCGTCTCTGAGTTGGAGAACCAATATCAAACAAGCTCAGCTAGCTTCCCAAATCTCCTACGCTCTCTTACAGAGACGCAACTGGGTACCACTCCTCCGAAACCTCAGTCTCTTCCCCAAACTGACGCCTGCTCTCTTTCTCCAAATCCTCCATAAAACCCAGAACAACCCACAAGTCTCTTTGGAGTTCTTCAATTGGGCCAAAGTAAATTTGAGGTTTGAACCGGACCTCAAATCCAACTGCCAAATCATCCGAGTCTCACTTGGGTCGGGCCTTGTTCGACCCGTGAAACCCATCTTGGATTCTCTAATTCAAACTCATCCTGTATCAGAGCTTGTACAGTGCATTACTCTAGCGTGTAAAGGTACAGATTCTCAATCCACTACGTTAAGTTTTGTTCTTGGATGCTATTCAAGAAAGGGTTTGTTTAGAGAAGGCTTAGAAGTATTTAGGAAAATGAATGTTCTTGGTTGTGTTCCTTCAGTTGTTGCCTGCAATGCTCTGCTTAATGCTATACAACGAGAAAATGAGATTAGATTGGCGTGGTGTTTCTATGGCCTTATGATCCGGAATGGGGTTTTACCAGATCGATTTACATGGTCACTGGTTGCTCAAATTCTTTGTAAAGATGGGAAATTTGAAAGAATTCTTAGACTTTTGGATTTGAACATTTATAATTCTATGATGTATAATCTTCTTGTTGATGGTTGTAGCAAAAGTGGCAACTTTGATGCTGCATTTTCCCACTTAAACGAGATGTGTGATAGAAAAGTGGATCCTGATTTTAGTACTTATAGCTCTATTCTTGATGGAGCATGTAAACTTGGGAATGTGGAAGTGGTTGAAAGGGTAACAAGTGTTATGGTAGAGAAGAAATTGCTTCCCAATTGCCCTTTATCAGAGTATGATTCAATAGTTGAGAAACTTTGTGACTTGGGCAAAACACATGCCGCGGAAATGTTCTTTAAGAAAGCATGTGATGAAAAAATTGGACTCCAAGATGGTACCTATGGGCTTATGTTGAAGGCATTGACTAATGAAGTGAGAACAAAAGAAGCAATTTCGGTTTATCGTCTGATTTCTGAACGGGGTATTGTAGTGGATGGCAGTAGTTATCATGCATTTGCAGATGTTCTTTGCAAGGAAGAGCGGTATGAGGAAGGGTTTGAGTTGTTAATGGATGTTATAAGTAGAGGGTGTAGTCCTTCTGCATCGGAGCTGTCCTGTTTTATATCATTTCTGTGTCGTAGGGGTAGATGGAGAGAAGCAGAGTATCTGTTGAATGTTGTTCTAGACAAGGGGCTGCTACCGGATTTGATTTGCTGTTCCCCGTTAGTGGGGCGATACTGCTCTGGAAGACAGATTGATTCAGCTATTGCATTGCATAATAAGATGGAAAAATTGAATGGCAGCTTGGATGTAACAACCTACAATGTACTTCTCAGTGGGCTGTTTGCAGCAAGGAGGATTGAAGAAGCAATGAGAGTGTTTGATTACATGAGAAGACACAACTTGATGAGCAGTGCAAGCTTCACAATCATGATCCGTGGGCTCTGTGGTGTGAAGGAGTTGAGAAAGGCAATGAAAATTCATGATGAAATGTTGAAGATGAGGCTGAAACCTGATGCAGCAACTTATAAGCGTTTGATATCTGGGTTCCAAGTAACCTTATCAAACTTAGAAACTAGAAATGAGGGTGATGAAGCAAAGTGA

Protein Analysis

587

Amino Acids

66.35

Weight (kDa)

8.87

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21170
fragaria_vesca FvH4_3g02620
malus_domestica MD00G1180200.v1.1
prunus_persica Prupe.4G025500_v2.0.a1
pyrus_communis pycom05g31090
rosa_chinensis RchiOBHm_Chr5g0003911
rosa_laevigata RLG00000031187
rosa_multiflora Rmu_sc0011733.1_g000003 Rmu_sc0019391.1_g000005
rosa_roxburghii Rroxscaffold_1G00072060
rosa_rugosa Rorug04G0407800
rosa_samantha Rh5CG037900 Rh5DG034100
rosa_wichuraiana Rw5G003240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 723, 1235, 1686
Acc65I GGTACC 2 cut(s) 133, 1052
AccB1I GGYRCC 2 cut(s) 133, 1052
AccBSI CCGCTC 1 cut(s) 1198
AccII CGCG 1 cut(s) 1001
AccIII TCCGGA 1 cut(s) 615
AciI CCGC 3 cut(s) 999, 1001, 1198
AclWI GGATC 4 cut(s) 607, 818, 831, 1585
AcsI RAATTY 5 cut(s) 256, 663, 683, 693, 1635
AcuI CTGAAG 1 cut(s) 513
AcyI GRCGYC 1 cut(s) 173
AfaI GTAC 6 cut(s) 135, 387, 415, 838, 1054, 1485
AfiI CCNNNNNNNGG 3 cut(s) 622, 1384, 1385
AjuI GAANNNNNNNTTGG 4 cut(s) 329, 361, 1445, 1477
Alw26I GTCTC 5 cut(s) 57, 115, 161, 229, 310
AlwI GGATC 4 cut(s) 607, 818, 831, 1585
Aor13HI TCCGGA 1 cut(s) 615
AoxI GGCC 3 cut(s) 246, 319, 604
ApeKI GCWGC 5 cut(s) 782, 1351, 1458, 1505, 1676
ApoI RAATTY 5 cut(s) 256, 663, 683, 693, 1635
ArsI GACNNNNNNTTYG 2 cut(s) 139, 171
Asp700I GAANNNNTTC 1 cut(s) 693
Asp718I GGTACC 2 cut(s) 133, 1052
AspS9I GGNCC 3 cut(s) 246, 274, 319
AsuHPI GGTGA 2 cut(s) 11, 1757
AsuNHI GCTAGC 1 cut(s) 88
AvaII GGWCC 1 cut(s) 274
BamHI GGATCC 1 cut(s) 823
BanI GGYRCC 2 cut(s) 133, 1052
BanII GRGCYC 1 cut(s) 1602
BbsI GAAGAC 2 cut(s) 1411, 1558
BbvI GCAGC 5 cut(s) 769, 1338, 1470, 1517, 1688
BccI CCATC 8 cut(s) 350, 671, 746, 851, 1043, 1145, 1299, 1435
BcoDI GTCTC 5 cut(s) 57, 115, 161, 229, 310
BfaI CTAG 4 cut(s) 89, 401, 1340, 1734
BisI GCNGC 6 cut(s) 783, 999, 1352, 1459, 1506, 1677
BlpI GCTNAGC 1 cut(s) 84
BlsI GCNGC 6 cut(s) 784, 1000, 1353, 1460, 1507, 1678
BmcAI AGTACT 1 cut(s) 838
Bme18I GGWCC 1 cut(s) 274
BmgT120I GGNCC 3 cut(s) 246, 274, 319
BmiI GGNNCC 4 cut(s) 135, 825, 1054, 1706
BmrI ACTGGG 1 cut(s) 139
BmsI GCATC 4 cut(s) 443, 769, 1268, 1663
BmtI GCTAGC 1 cut(s) 92
BmuI ACTGGG 1 cut(s) 139
BpiI GAAGAC 2 cut(s) 1411, 1558
Bpu1102I GCTNAGC 1 cut(s) 84
Bsa29I ATCGAT 1 cut(s) 637
BsaHI GRCGYC 1 cut(s) 173
BsaJI CCNNGG 2 cut(s) 999, 1594
BsaWI WCCGGW 3 cut(s) 271, 615, 1357
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bsc4I CCNNNNNNNGG 3 cut(s) 622, 1384, 1385
Bse1I ACTGG 2 cut(s) 134, 657
Bse3DI GCAATG 4 cut(s) 550, 1427, 1533, 1635
BseAI TCCGGA 1 cut(s) 615
BseCI ATCGAT 1 cut(s) 637
BseDI CCNNGG 2 cut(s) 999, 1594
BseGI GGATG 6 cut(s) 297, 367, 458, 1156, 1234, 1471
BseLI CCNNNNNNNGG 3 cut(s) 622, 1384, 1385
BseMI GCAATG 4 cut(s) 550, 1427, 1533, 1635
BseMII CTCAG 4 cut(s) 47, 98, 166, 1504
BseNI ACTGG 2 cut(s) 134, 657
BseRI GAGGAG 1 cut(s) 131
BseXI GCAGC 5 cut(s) 769, 1338, 1470, 1517, 1688
Bsh1236I CGCG 1 cut(s) 1001
BshFI GGCC 3 cut(s) 248, 321, 606
BshNI GGYRCC 2 cut(s) 133, 1052
BshVI ATCGAT 1 cut(s) 637
BsiSI CCGG 3 cut(s) 272, 616, 1358
BslI CCNNNNNNNGG 3 cut(s) 622, 1384, 1385
BsmAI GTCTC 5 cut(s) 57, 115, 161, 229, 310
BsmBI CGTCTC 2 cut(s) 57, 115
BsnI GGCC 3 cut(s) 248, 321, 606
Bsp1286I GDGCHC 1 cut(s) 1602
Bsp13I TCCGGA 1 cut(s) 615
Bsp1407I TGTACA 1 cut(s) 385
Bsp143I GATC 4 cut(s) 612, 634, 823, 1590
Bsp1720I GCTNAGC 1 cut(s) 84
BspACI CCGC 3 cut(s) 999, 1001, 1198
BspANI GGCC 3 cut(s) 248, 321, 606
BspCNI CTCAG 4 cut(s) 48, 97, 165, 1503
BspDI ATCGAT 1 cut(s) 637
BspEI TCCGGA 1 cut(s) 615
BspFNI CGCG 1 cut(s) 1001
BspHI TCATGA 2 cut(s) 1587, 1639
BspLI GGNNCC 4 cut(s) 135, 825, 1054, 1706
BspOI GCTAGC 1 cut(s) 92
BspPI GGATC 4 cut(s) 607, 818, 831, 1585
BspQI GCTCTTC 1 cut(s) 1188
BspT107I GGYRCC 2 cut(s) 133, 1052
BsrBI CCGCTC 1 cut(s) 1198
BsrDI GCAATG 4 cut(s) 550, 1427, 1533, 1635
BsrGI TGTACA 1 cut(s) 385
BsrI ACTGG 2 cut(s) 134, 657
BssECI CCNNGG 2 cut(s) 999, 1594
BssMI GATC 4 cut(s) 612, 634, 823, 1590
BssNI GRCGYC 1 cut(s) 173
Bst4CI ACNGT 1 cut(s) 390
Bst6I CTCTTC 2 cut(s) 164, 1188
BstACI GRCGYC 1 cut(s) 173
BstAUI TGTACA 1 cut(s) 385
BstC8I GCNNGC 4 cut(s) 90, 177, 541, 1576
BstDEI CTNAG 7 cut(s) 56, 84, 152, 487, 698, 1490, 1726
BstDSI CCRYGG 2 cut(s) 999, 1594
BstF5I GGATG 6 cut(s) 297, 367, 458, 1156, 1234, 1471
BstFNI CGCG 1 cut(s) 1001
BstKTI GATC 4 cut(s) 615, 637, 826, 1593
BstMAI GTCTC 5 cut(s) 57, 115, 161, 229, 310
BstMBI GATC 4 cut(s) 612, 634, 823, 1590
BstMWI GCNNNNNNNGC 4 cut(s) 89, 545, 768, 1575
BstNSI RCATGY 3 cut(s) 867, 998, 1026
BstUI CGCG 1 cut(s) 1001
BstV1I GCAGC 5 cut(s) 769, 1338, 1470, 1517, 1688
BstV2I GAAGAC 2 cut(s) 1411, 1558
BstX2I RGATCY 1 cut(s) 823
BstYI RGATCY 1 cut(s) 823
Bsu15I ATCGAT 1 cut(s) 637
BsuRI GGCC 3 cut(s) 248, 321, 606
BsuTUI ATCGAT 1 cut(s) 637
BtgI CCRYGG 2 cut(s) 999, 1594
BtsCI GGATG 6 cut(s) 297, 367, 458, 1156, 1234, 1471
BtsI GCAGTG 1 cut(s) 1576
BtsIMutI CAGTG 4 cut(s) 395, 650, 1498, 1576
Cac8I GCNNGC 4 cut(s) 90, 177, 541, 1576
CciI TCATGA 2 cut(s) 1587, 1639
Cfr13I GGNCC 3 cut(s) 246, 274, 319
Cfr42I CCGCGG 1 cut(s) 1002
ClaI ATCGAT 1 cut(s) 637
CseI GACGC 2 cut(s) 132, 181
Csp6I GTAC 6 cut(s) 134, 386, 414, 837, 1053, 1484
CviAII CATG 8 cut(s) 645, 864, 995, 1023, 1166, 1546, 1588, 1640
CviQI GTAC 6 cut(s) 134, 386, 414, 837, 1053, 1484
DdeI CTNAG 7 cut(s) 56, 84, 152, 487, 698, 1490, 1726
DpnI GATC 4 cut(s) 614, 636, 825, 1592
DpnII GATC 4 cut(s) 612, 634, 823, 1590
Eam1104I CTCTTC 2 cut(s) 164, 1188
EarI CTCTTC 2 cut(s) 164, 1188
Eco24I GRGCYC 1 cut(s) 1602
Eco32I GATATC 1 cut(s) 1698
Eco47I GGWCC 1 cut(s) 274
Eco57I CTGAAG 1 cut(s) 513
EcoRI GAATTC 1 cut(s) 693
EcoRV GATATC 1 cut(s) 1698
EcoT22I ATGCAT 1 cut(s) 1171
EcoT38I GRGCYC 1 cut(s) 1602
Esp3I CGTCTC 2 cut(s) 57, 115
FaeI CATG 8 cut(s) 648, 867, 998, 1026, 1169, 1549, 1591, 1643
FatI CATG 8 cut(s) 644, 863, 994, 1022, 1165, 1545, 1587, 1639
Fnu4HI GCNGC 6 cut(s) 783, 999, 1352, 1459, 1506, 1677
FokI GGATG 6 cut(s) 284, 354, 465, 1163, 1241, 1478
FriOI GRGCYC 1 cut(s) 1602
Fsp4HI GCNGC 6 cut(s) 783, 999, 1352, 1459, 1506, 1677
FspBI CTAG 4 cut(s) 89, 401, 1340, 1734
GluI GCNGC 6 cut(s) 783, 999, 1352, 1459, 1506, 1677
HaeIII GGCC 3 cut(s) 248, 321, 606
HapII CCGG 3 cut(s) 272, 616, 1358
HgaI GACGC 2 cut(s) 132, 181
Hin1I GRCGYC 1 cut(s) 173
Hin1II CATG 8 cut(s) 648, 867, 998, 1026, 1169, 1549, 1591, 1643
HindIII AAGCTT 1 cut(s) 1576
HinfI GANTC 6 cut(s) 303, 350, 419, 956, 1041, 1415
HpaII CCGG 3 cut(s) 272, 616, 1358
HphI GGTGA 2 cut(s) 11, 1757
Hpy166II GTNNAC 1 cut(s) 869
Hpy188I TCNGA 8 cut(s) 57, 146, 302, 379, 949, 1125, 1132, 1264
Hpy188III TCNNGA 8 cut(s) 462, 616, 827, 854, 1340, 1401, 1588, 1640
Hpy8I GTNNAC 1 cut(s) 869
HpyAV CCTTC 6 cut(s) 476, 537, 1066, 1202, 1263, 1606
HpyCH4III ACNGT 1 cut(s) 390
HpyCH4IV ACGT 1 cut(s) 434
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 545, 768, 1575
HpyF3I CTNAG 7 cut(s) 56, 84, 152, 487, 698, 1490, 1726
HpySE526I ACGT 1 cut(s) 434
Hsp92I GRCGYC 1 cut(s) 173
Hsp92II CATG 8 cut(s) 648, 867, 998, 1026, 1169, 1549, 1591, 1643
Kpn2I TCCGGA 1 cut(s) 615
KpnI GGTACC 2 cut(s) 137, 1056
KspI CCGCGG 1 cut(s) 1002
Kzo9I GATC 4 cut(s) 612, 634, 823, 1590
LguI GCTCTTC 1 cut(s) 1188
LmnI GCTCC 2 cut(s) 860, 1264
Lsp1109I GCAGC 5 cut(s) 769, 1338, 1470, 1517, 1688
LweI GCATC 4 cut(s) 443, 769, 1268, 1663
MaeI CTAG 4 cut(s) 89, 401, 1340, 1734
MaeII ACGT 1 cut(s) 434
MaeIII GTNAC 5 cut(s) 648, 898, 977, 1468, 1711
MalI GATC 4 cut(s) 614, 636, 825, 1592
MbiI CCGCTC 1 cut(s) 1198
MboI GATC 4 cut(s) 612, 634, 823, 1590
MboII GAAGA 9 cut(s) 151, 229, 734, 931, 1205, 1416, 1532, 1563, 1666
MfeI CAATTG 2 cut(s) 241, 934
MflI RGATCY 1 cut(s) 823
MhlI GDGCHC 1 cut(s) 1602
MlyI GAGTC 2 cut(s) 312, 1035
MmeI TCCRAC 2 cut(s) 41, 309
Mph1103I ATGCAT 1 cut(s) 1171
MroI TCCGGA 1 cut(s) 615
MroXI GAANNNNTTC 1 cut(s) 693
MseI TTAA 5 cut(s) 437, 555, 797, 1014, 1223
MslI CAYNNNNRTG 2 cut(s) 1288, 1586
MspA1I CMGCKG 1 cut(s) 1001
MspI CCGG 3 cut(s) 272, 616, 1358
MunI CAATTG 2 cut(s) 241, 934
MvnI CGCG 1 cut(s) 1001
MwoI GCNNNNNNNGC 4 cut(s) 89, 545, 768, 1575
NdeII GATC 4 cut(s) 612, 634, 823, 1590
NheI GCTAGC 1 cut(s) 88
NlaIII CATG 8 cut(s) 648, 867, 998, 1026, 1169, 1549, 1591, 1643
NlaIV GGNNCC 4 cut(s) 135, 825, 1054, 1706
NmuCI GTSAC 2 cut(s) 648, 977
NsiI ATGCAT 1 cut(s) 1171
NspI RCATGY 3 cut(s) 867, 998, 1026
PagI TCATGA 2 cut(s) 1587, 1639
PciSI GCTCTTC 1 cut(s) 1188
PdmI GAANNNNTTC 1 cut(s) 693
PfeI GAWTC 4 cut(s) 350, 419, 956, 1415
PkrI GCNGC 6 cut(s) 784, 1000, 1353, 1460, 1507, 1678
PleI GAGTC 2 cut(s) 311, 1035
PpsI GAGTC 2 cut(s) 311, 1035
PsiI TTATAA 3 cut(s) 723, 1235, 1686
PspN4I GGNNCC 4 cut(s) 135, 825, 1054, 1706
PspPI GGNCC 3 cut(s) 246, 274, 319
PsuI RGATCY 1 cut(s) 823
RsaI GTAC 6 cut(s) 135, 387, 415, 838, 1054, 1485
RsaNI GTAC 6 cut(s) 134, 386, 414, 837, 1053, 1484
RseI CAYNNNNRTG 2 cut(s) 1288, 1586
SacII CCGCGG 1 cut(s) 1002
SapI GCTCTTC 1 cut(s) 1188
SaqAI TTAA 5 cut(s) 437, 555, 797, 1014, 1223
SatI GCNGC 6 cut(s) 783, 999, 1352, 1459, 1506, 1677
Sau3AI GATC 4 cut(s) 612, 634, 823, 1590
Sau96I GGNCC 3 cut(s) 246, 274, 319
ScaI AGTACT 1 cut(s) 838
SchI GAGTC 2 cut(s) 312, 1035
SduI GDGCHC 1 cut(s) 1602
SfaNI GCATC 4 cut(s) 443, 769, 1268, 1663
Sfr303I CCGCGG 1 cut(s) 1002
SgrBI CCGCGG 1 cut(s) 1002
SinI GGWCC 1 cut(s) 274
SmiMI CAYNNNNRTG 2 cut(s) 1288, 1586
SsiI CCGC 3 cut(s) 999, 1001, 1198
SspMI CTAG 4 cut(s) 89, 401, 1340, 1734
TaaI ACNGT 1 cut(s) 390
TaiI ACGT 1 cut(s) 437
TaqI TCGA 2 cut(s) 328, 637
TatI WGTACW 3 cut(s) 385, 836, 1483
TauI GCSGC 1 cut(s) 1001
TfiI GAWTC 4 cut(s) 350, 419, 956, 1415
Tru1I TTAA 5 cut(s) 437, 555, 797, 1014, 1223
Tru9I TTAA 5 cut(s) 437, 555, 797, 1014, 1223
TscAI CASTG 4 cut(s) 395, 657, 1498, 1576
TseFI GTSAC 2 cut(s) 648, 977
TseI GCWGC 5 cut(s) 782, 1351, 1458, 1505, 1676
Tsp45I GTSAC 2 cut(s) 648, 977
TspDTI ATGAA 6 cut(s) 521, 1044, 1101, 1628, 1646, 1659
TspGWI ACGGA 1 cut(s) 1583
TspRI CASTG 4 cut(s) 395, 657, 1498, 1576
VpaK11BI GGWCC 1 cut(s) 274
XapI RAATTY 5 cut(s) 256, 663, 683, 693, 1635
XbaI TCTAGA 1 cut(s) 1339
XceI RCATGY 3 cut(s) 867, 998, 1026
XmnI GAANNNNTTC 1 cut(s) 693
XspI CTAG 4 cut(s) 89, 401, 1340, 1734
ZrmI AGTACT 1 cut(s) 838
Zsp2I ATGCAT 1 cut(s) 1171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.