Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G21170 |
| fragaria_vesca | FvH4_3g02620 |
| malus_domestica | MD00G1180200.v1.1 |
| prunus_persica | Prupe.4G025500_v2.0.a1 |
| pyrus_communis | pycom05g31090 |
| rosa_chinensis | RchiOBHm_Chr5g0003911 |
| rosa_laevigata | RLG00000031187 |
| rosa_multiflora | Rmu_sc0011733.1_g000003 Rmu_sc0019391.1_g000005 |
| rosa_roxburghii | Rroxscaffold_1G00072060 |
| rosa_rugosa | Rorug04G0407800 |
| rosa_samantha | Rh5CG037900 Rh5DG034100 |
| rosa_wichuraiana | Rw5G003240 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 723, 1235, 1686 |
| Acc65I | GGTACC | 2 cut(s) | 133, 1052 |
| AccB1I | GGYRCC | 2 cut(s) | 133, 1052 |
| AccBSI | CCGCTC | 1 cut(s) | 1198 |
| AccII | CGCG | 1 cut(s) | 1001 |
| AccIII | TCCGGA | 1 cut(s) | 615 |
| AciI | CCGC | 3 cut(s) | 999, 1001, 1198 |
| AclWI | GGATC | 4 cut(s) | 607, 818, 831, 1585 |
| AcsI | RAATTY | 5 cut(s) | 256, 663, 683, 693, 1635 |
| AcuI | CTGAAG | 1 cut(s) | 513 |
| AcyI | GRCGYC | 1 cut(s) | 173 |
| AfaI | GTAC | 6 cut(s) | 135, 387, 415, 838, 1054, 1485 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 622, 1384, 1385 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 329, 361, 1445, 1477 |
| Alw26I | GTCTC | 5 cut(s) | 57, 115, 161, 229, 310 |
| AlwI | GGATC | 4 cut(s) | 607, 818, 831, 1585 |
| Aor13HI | TCCGGA | 1 cut(s) | 615 |
| AoxI | GGCC | 3 cut(s) | 246, 319, 604 |
| ApeKI | GCWGC | 5 cut(s) | 782, 1351, 1458, 1505, 1676 |
| ApoI | RAATTY | 5 cut(s) | 256, 663, 683, 693, 1635 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 139, 171 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 693 |
| Asp718I | GGTACC | 2 cut(s) | 133, 1052 |
| AspS9I | GGNCC | 3 cut(s) | 246, 274, 319 |
| AsuHPI | GGTGA | 2 cut(s) | 11, 1757 |
| AsuNHI | GCTAGC | 1 cut(s) | 88 |
| AvaII | GGWCC | 1 cut(s) | 274 |
| BamHI | GGATCC | 1 cut(s) | 823 |
| BanI | GGYRCC | 2 cut(s) | 133, 1052 |
| BanII | GRGCYC | 1 cut(s) | 1602 |
| BbsI | GAAGAC | 2 cut(s) | 1411, 1558 |
| BbvI | GCAGC | 5 cut(s) | 769, 1338, 1470, 1517, 1688 |
| BccI | CCATC | 8 cut(s) | 350, 671, 746, 851, 1043, 1145, 1299, 1435 |
| BcoDI | GTCTC | 5 cut(s) | 57, 115, 161, 229, 310 |
| BfaI | CTAG | 4 cut(s) | 89, 401, 1340, 1734 |
| BisI | GCNGC | 6 cut(s) | 783, 999, 1352, 1459, 1506, 1677 |
| BlpI | GCTNAGC | 1 cut(s) | 84 |
| BlsI | GCNGC | 6 cut(s) | 784, 1000, 1353, 1460, 1507, 1678 |
| BmcAI | AGTACT | 1 cut(s) | 838 |
| Bme18I | GGWCC | 1 cut(s) | 274 |
| BmgT120I | GGNCC | 3 cut(s) | 246, 274, 319 |
| BmiI | GGNNCC | 4 cut(s) | 135, 825, 1054, 1706 |
| BmrI | ACTGGG | 1 cut(s) | 139 |
| BmsI | GCATC | 4 cut(s) | 443, 769, 1268, 1663 |
| BmtI | GCTAGC | 1 cut(s) | 92 |
| BmuI | ACTGGG | 1 cut(s) | 139 |
| BpiI | GAAGAC | 2 cut(s) | 1411, 1558 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 84 |
| Bsa29I | ATCGAT | 1 cut(s) | 637 |
| BsaHI | GRCGYC | 1 cut(s) | 173 |
| BsaJI | CCNNGG | 2 cut(s) | 999, 1594 |
| BsaWI | WCCGGW | 3 cut(s) | 271, 615, 1357 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 126, 156 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 622, 1384, 1385 |
| Bse1I | ACTGG | 2 cut(s) | 134, 657 |
| Bse3DI | GCAATG | 4 cut(s) | 550, 1427, 1533, 1635 |
| BseAI | TCCGGA | 1 cut(s) | 615 |
| BseCI | ATCGAT | 1 cut(s) | 637 |
| BseDI | CCNNGG | 2 cut(s) | 999, 1594 |
| BseGI | GGATG | 6 cut(s) | 297, 367, 458, 1156, 1234, 1471 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 622, 1384, 1385 |
| BseMI | GCAATG | 4 cut(s) | 550, 1427, 1533, 1635 |
| BseMII | CTCAG | 4 cut(s) | 47, 98, 166, 1504 |
| BseNI | ACTGG | 2 cut(s) | 134, 657 |
| BseRI | GAGGAG | 1 cut(s) | 131 |
| BseXI | GCAGC | 5 cut(s) | 769, 1338, 1470, 1517, 1688 |
| Bsh1236I | CGCG | 1 cut(s) | 1001 |
| BshFI | GGCC | 3 cut(s) | 248, 321, 606 |
| BshNI | GGYRCC | 2 cut(s) | 133, 1052 |
| BshVI | ATCGAT | 1 cut(s) | 637 |
| BsiSI | CCGG | 3 cut(s) | 272, 616, 1358 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 622, 1384, 1385 |
| BsmAI | GTCTC | 5 cut(s) | 57, 115, 161, 229, 310 |
| BsmBI | CGTCTC | 2 cut(s) | 57, 115 |
| BsnI | GGCC | 3 cut(s) | 248, 321, 606 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1602 |
| Bsp13I | TCCGGA | 1 cut(s) | 615 |
| Bsp1407I | TGTACA | 1 cut(s) | 385 |
| Bsp143I | GATC | 4 cut(s) | 612, 634, 823, 1590 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 84 |
| BspACI | CCGC | 3 cut(s) | 999, 1001, 1198 |
| BspANI | GGCC | 3 cut(s) | 248, 321, 606 |
| BspCNI | CTCAG | 4 cut(s) | 48, 97, 165, 1503 |
| BspDI | ATCGAT | 1 cut(s) | 637 |
| BspEI | TCCGGA | 1 cut(s) | 615 |
| BspFNI | CGCG | 1 cut(s) | 1001 |
| BspHI | TCATGA | 2 cut(s) | 1587, 1639 |
| BspLI | GGNNCC | 4 cut(s) | 135, 825, 1054, 1706 |
| BspOI | GCTAGC | 1 cut(s) | 92 |
| BspPI | GGATC | 4 cut(s) | 607, 818, 831, 1585 |
| BspQI | GCTCTTC | 1 cut(s) | 1188 |
| BspT107I | GGYRCC | 2 cut(s) | 133, 1052 |
| BsrBI | CCGCTC | 1 cut(s) | 1198 |
| BsrDI | GCAATG | 4 cut(s) | 550, 1427, 1533, 1635 |
| BsrGI | TGTACA | 1 cut(s) | 385 |
| BsrI | ACTGG | 2 cut(s) | 134, 657 |
| BssECI | CCNNGG | 2 cut(s) | 999, 1594 |
| BssMI | GATC | 4 cut(s) | 612, 634, 823, 1590 |
| BssNI | GRCGYC | 1 cut(s) | 173 |
| Bst4CI | ACNGT | 1 cut(s) | 390 |
| Bst6I | CTCTTC | 2 cut(s) | 164, 1188 |
| BstACI | GRCGYC | 1 cut(s) | 173 |
| BstAUI | TGTACA | 1 cut(s) | 385 |
| BstC8I | GCNNGC | 4 cut(s) | 90, 177, 541, 1576 |
| BstDEI | CTNAG | 7 cut(s) | 56, 84, 152, 487, 698, 1490, 1726 |
| BstDSI | CCRYGG | 2 cut(s) | 999, 1594 |
| BstF5I | GGATG | 6 cut(s) | 297, 367, 458, 1156, 1234, 1471 |
| BstFNI | CGCG | 1 cut(s) | 1001 |
| BstKTI | GATC | 4 cut(s) | 615, 637, 826, 1593 |
| BstMAI | GTCTC | 5 cut(s) | 57, 115, 161, 229, 310 |
| BstMBI | GATC | 4 cut(s) | 612, 634, 823, 1590 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 89, 545, 768, 1575 |
| BstNSI | RCATGY | 3 cut(s) | 867, 998, 1026 |
| BstUI | CGCG | 1 cut(s) | 1001 |
| BstV1I | GCAGC | 5 cut(s) | 769, 1338, 1470, 1517, 1688 |
| BstV2I | GAAGAC | 2 cut(s) | 1411, 1558 |
| BstX2I | RGATCY | 1 cut(s) | 823 |
| BstYI | RGATCY | 1 cut(s) | 823 |
| Bsu15I | ATCGAT | 1 cut(s) | 637 |
| BsuRI | GGCC | 3 cut(s) | 248, 321, 606 |
| BsuTUI | ATCGAT | 1 cut(s) | 637 |
| BtgI | CCRYGG | 2 cut(s) | 999, 1594 |
| BtsCI | GGATG | 6 cut(s) | 297, 367, 458, 1156, 1234, 1471 |
| BtsI | GCAGTG | 1 cut(s) | 1576 |
| BtsIMutI | CAGTG | 4 cut(s) | 395, 650, 1498, 1576 |
| Cac8I | GCNNGC | 4 cut(s) | 90, 177, 541, 1576 |
| CciI | TCATGA | 2 cut(s) | 1587, 1639 |
| Cfr13I | GGNCC | 3 cut(s) | 246, 274, 319 |
| Cfr42I | CCGCGG | 1 cut(s) | 1002 |
| ClaI | ATCGAT | 1 cut(s) | 637 |
| CseI | GACGC | 2 cut(s) | 132, 181 |
| Csp6I | GTAC | 6 cut(s) | 134, 386, 414, 837, 1053, 1484 |
| CviAII | CATG | 8 cut(s) | 645, 864, 995, 1023, 1166, 1546, 1588, 1640 |
| CviQI | GTAC | 6 cut(s) | 134, 386, 414, 837, 1053, 1484 |
| DdeI | CTNAG | 7 cut(s) | 56, 84, 152, 487, 698, 1490, 1726 |
| DpnI | GATC | 4 cut(s) | 614, 636, 825, 1592 |
| DpnII | GATC | 4 cut(s) | 612, 634, 823, 1590 |
| Eam1104I | CTCTTC | 2 cut(s) | 164, 1188 |
| EarI | CTCTTC | 2 cut(s) | 164, 1188 |
| Eco24I | GRGCYC | 1 cut(s) | 1602 |
| Eco32I | GATATC | 1 cut(s) | 1698 |
| Eco47I | GGWCC | 1 cut(s) | 274 |
| Eco57I | CTGAAG | 1 cut(s) | 513 |
| EcoRI | GAATTC | 1 cut(s) | 693 |
| EcoRV | GATATC | 1 cut(s) | 1698 |
| EcoT22I | ATGCAT | 1 cut(s) | 1171 |
| EcoT38I | GRGCYC | 1 cut(s) | 1602 |
| Esp3I | CGTCTC | 2 cut(s) | 57, 115 |
| FaeI | CATG | 8 cut(s) | 648, 867, 998, 1026, 1169, 1549, 1591, 1643 |
| FatI | CATG | 8 cut(s) | 644, 863, 994, 1022, 1165, 1545, 1587, 1639 |
| Fnu4HI | GCNGC | 6 cut(s) | 783, 999, 1352, 1459, 1506, 1677 |
| FokI | GGATG | 6 cut(s) | 284, 354, 465, 1163, 1241, 1478 |
| FriOI | GRGCYC | 1 cut(s) | 1602 |
| Fsp4HI | GCNGC | 6 cut(s) | 783, 999, 1352, 1459, 1506, 1677 |
| FspBI | CTAG | 4 cut(s) | 89, 401, 1340, 1734 |
| GluI | GCNGC | 6 cut(s) | 783, 999, 1352, 1459, 1506, 1677 |
| HaeIII | GGCC | 3 cut(s) | 248, 321, 606 |
| HapII | CCGG | 3 cut(s) | 272, 616, 1358 |
| HgaI | GACGC | 2 cut(s) | 132, 181 |
| Hin1I | GRCGYC | 1 cut(s) | 173 |
| Hin1II | CATG | 8 cut(s) | 648, 867, 998, 1026, 1169, 1549, 1591, 1643 |
| HindIII | AAGCTT | 1 cut(s) | 1576 |
| HinfI | GANTC | 6 cut(s) | 303, 350, 419, 956, 1041, 1415 |
| HpaII | CCGG | 3 cut(s) | 272, 616, 1358 |
| HphI | GGTGA | 2 cut(s) | 11, 1757 |
| Hpy166II | GTNNAC | 1 cut(s) | 869 |
| Hpy188I | TCNGA | 8 cut(s) | 57, 146, 302, 379, 949, 1125, 1132, 1264 |
| Hpy188III | TCNNGA | 8 cut(s) | 462, 616, 827, 854, 1340, 1401, 1588, 1640 |
| Hpy8I | GTNNAC | 1 cut(s) | 869 |
| HpyAV | CCTTC | 6 cut(s) | 476, 537, 1066, 1202, 1263, 1606 |
| HpyCH4III | ACNGT | 1 cut(s) | 390 |
| HpyCH4IV | ACGT | 1 cut(s) | 434 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 89, 545, 768, 1575 |
| HpyF3I | CTNAG | 7 cut(s) | 56, 84, 152, 487, 698, 1490, 1726 |
| HpySE526I | ACGT | 1 cut(s) | 434 |
| Hsp92I | GRCGYC | 1 cut(s) | 173 |
| Hsp92II | CATG | 8 cut(s) | 648, 867, 998, 1026, 1169, 1549, 1591, 1643 |
| Kpn2I | TCCGGA | 1 cut(s) | 615 |
| KpnI | GGTACC | 2 cut(s) | 137, 1056 |
| KspI | CCGCGG | 1 cut(s) | 1002 |
| Kzo9I | GATC | 4 cut(s) | 612, 634, 823, 1590 |
| LguI | GCTCTTC | 1 cut(s) | 1188 |
| LmnI | GCTCC | 2 cut(s) | 860, 1264 |
| Lsp1109I | GCAGC | 5 cut(s) | 769, 1338, 1470, 1517, 1688 |
| LweI | GCATC | 4 cut(s) | 443, 769, 1268, 1663 |
| MaeI | CTAG | 4 cut(s) | 89, 401, 1340, 1734 |
| MaeII | ACGT | 1 cut(s) | 434 |
| MaeIII | GTNAC | 5 cut(s) | 648, 898, 977, 1468, 1711 |
| MalI | GATC | 4 cut(s) | 614, 636, 825, 1592 |
| MbiI | CCGCTC | 1 cut(s) | 1198 |
| MboI | GATC | 4 cut(s) | 612, 634, 823, 1590 |
| MboII | GAAGA | 9 cut(s) | 151, 229, 734, 931, 1205, 1416, 1532, 1563, 1666 |
| MfeI | CAATTG | 2 cut(s) | 241, 934 |
| MflI | RGATCY | 1 cut(s) | 823 |
| MhlI | GDGCHC | 1 cut(s) | 1602 |
| MlyI | GAGTC | 2 cut(s) | 312, 1035 |
| MmeI | TCCRAC | 2 cut(s) | 41, 309 |
| Mph1103I | ATGCAT | 1 cut(s) | 1171 |
| MroI | TCCGGA | 1 cut(s) | 615 |
| MroXI | GAANNNNTTC | 1 cut(s) | 693 |
| MseI | TTAA | 5 cut(s) | 437, 555, 797, 1014, 1223 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1288, 1586 |
| MspA1I | CMGCKG | 1 cut(s) | 1001 |
| MspI | CCGG | 3 cut(s) | 272, 616, 1358 |
| MunI | CAATTG | 2 cut(s) | 241, 934 |
| MvnI | CGCG | 1 cut(s) | 1001 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 89, 545, 768, 1575 |
| NdeII | GATC | 4 cut(s) | 612, 634, 823, 1590 |
| NheI | GCTAGC | 1 cut(s) | 88 |
| NlaIII | CATG | 8 cut(s) | 648, 867, 998, 1026, 1169, 1549, 1591, 1643 |
| NlaIV | GGNNCC | 4 cut(s) | 135, 825, 1054, 1706 |
| NmuCI | GTSAC | 2 cut(s) | 648, 977 |
| NsiI | ATGCAT | 1 cut(s) | 1171 |
| NspI | RCATGY | 3 cut(s) | 867, 998, 1026 |
| PagI | TCATGA | 2 cut(s) | 1587, 1639 |
| PciSI | GCTCTTC | 1 cut(s) | 1188 |
| PdmI | GAANNNNTTC | 1 cut(s) | 693 |
| PfeI | GAWTC | 4 cut(s) | 350, 419, 956, 1415 |
| PkrI | GCNGC | 6 cut(s) | 784, 1000, 1353, 1460, 1507, 1678 |
| PleI | GAGTC | 2 cut(s) | 311, 1035 |
| PpsI | GAGTC | 2 cut(s) | 311, 1035 |
| PsiI | TTATAA | 3 cut(s) | 723, 1235, 1686 |
| PspN4I | GGNNCC | 4 cut(s) | 135, 825, 1054, 1706 |
| PspPI | GGNCC | 3 cut(s) | 246, 274, 319 |
| PsuI | RGATCY | 1 cut(s) | 823 |
| RsaI | GTAC | 6 cut(s) | 135, 387, 415, 838, 1054, 1485 |
| RsaNI | GTAC | 6 cut(s) | 134, 386, 414, 837, 1053, 1484 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1288, 1586 |
| SacII | CCGCGG | 1 cut(s) | 1002 |
| SapI | GCTCTTC | 1 cut(s) | 1188 |
| SaqAI | TTAA | 5 cut(s) | 437, 555, 797, 1014, 1223 |
| SatI | GCNGC | 6 cut(s) | 783, 999, 1352, 1459, 1506, 1677 |
| Sau3AI | GATC | 4 cut(s) | 612, 634, 823, 1590 |
| Sau96I | GGNCC | 3 cut(s) | 246, 274, 319 |
| ScaI | AGTACT | 1 cut(s) | 838 |
| SchI | GAGTC | 2 cut(s) | 312, 1035 |
| SduI | GDGCHC | 1 cut(s) | 1602 |
| SfaNI | GCATC | 4 cut(s) | 443, 769, 1268, 1663 |
| Sfr303I | CCGCGG | 1 cut(s) | 1002 |
| SgrBI | CCGCGG | 1 cut(s) | 1002 |
| SinI | GGWCC | 1 cut(s) | 274 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1288, 1586 |
| SsiI | CCGC | 3 cut(s) | 999, 1001, 1198 |
| SspMI | CTAG | 4 cut(s) | 89, 401, 1340, 1734 |
| TaaI | ACNGT | 1 cut(s) | 390 |
| TaiI | ACGT | 1 cut(s) | 437 |
| TaqI | TCGA | 2 cut(s) | 328, 637 |
| TatI | WGTACW | 3 cut(s) | 385, 836, 1483 |
| TauI | GCSGC | 1 cut(s) | 1001 |
| TfiI | GAWTC | 4 cut(s) | 350, 419, 956, 1415 |
| Tru1I | TTAA | 5 cut(s) | 437, 555, 797, 1014, 1223 |
| Tru9I | TTAA | 5 cut(s) | 437, 555, 797, 1014, 1223 |
| TscAI | CASTG | 4 cut(s) | 395, 657, 1498, 1576 |
| TseFI | GTSAC | 2 cut(s) | 648, 977 |
| TseI | GCWGC | 5 cut(s) | 782, 1351, 1458, 1505, 1676 |
| Tsp45I | GTSAC | 2 cut(s) | 648, 977 |
| TspDTI | ATGAA | 6 cut(s) | 521, 1044, 1101, 1628, 1646, 1659 |
| TspGWI | ACGGA | 1 cut(s) | 1583 |
| TspRI | CASTG | 4 cut(s) | 395, 657, 1498, 1576 |
| VpaK11BI | GGWCC | 1 cut(s) | 274 |
| XapI | RAATTY | 5 cut(s) | 256, 663, 683, 693, 1635 |
| XbaI | TCTAGA | 1 cut(s) | 1339 |
| XceI | RCATGY | 3 cut(s) | 867, 998, 1026 |
| XmnI | GAANNNNTTC | 1 cut(s) | 693 |
| XspI | CTAG | 4 cut(s) | 89, 401, 1340, 1734 |
| ZrmI | AGTACT | 1 cut(s) | 838 |
| Zsp2I | ATGCAT | 1 cut(s) | 1171 |