Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G21170 |
| fragaria_vesca | FvH4_3g02620 |
| malus_domestica | MD00G1180200.v1.1 |
| prunus_persica | Prupe.4G025500_v2.0.a1 |
| pyrus_communis | pycom05g31090 |
| rosa_chinensis | RchiOBHm_Chr5g0003911 |
| rosa_laevigata | RLG00000031187 |
| rosa_multiflora | Rmu_sc0011733.1_g000003 Rmu_sc0019391.1_g000005 |
| rosa_roxburghii | Rroxscaffold_1G00072060 |
| rosa_rugosa | Rorug04G0407800 |
| rosa_samantha | Rh5CG037900 Rh5DG034100 |
| rosa_wichuraiana | Rw5G003240 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1229, 1680 |
| AciI | CCGC | 2 cut(s) | 327, 992 |
| AclI | AACGTT | 1 cut(s) | 1684 |
| AcsI | RAATTY | 5 cut(s) | 677, 766, 917, 1324, 1629 |
| AcuI | CTGAAG | 1 cut(s) | 507 |
| AfaI | GTAC | 5 cut(s) | 46, 381, 409, 832, 1479 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 57, 1183 |
| AflII | CTTAAG | 2 cut(s) | 959, 1658 |
| AgsI | TTSAA | 9 cut(s) | 235, 683, 887, 954, 1034, 1324, 1514, 1648, 1702 |
| AjnI | CCWGG | 1 cut(s) | 820 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 242, 274, 1439, 1471 |
| AluBI | AGCT | 7 cut(s) | 26, 80, 376, 967, 1100, 1415, 1572 |
| AluI | AGCT | 7 cut(s) | 26, 80, 376, 967, 1100, 1415, 1572 |
| Alw26I | GTCTC | 3 cut(s) | 112, 396, 648 |
| Ama87I | CYCGRG | 1 cut(s) | 305 |
| AoxI | GGCC | 3 cut(s) | 240, 313, 1620 |
| ApeKI | GCWGC | 4 cut(s) | 776, 1063, 1499, 1670 |
| ApoI | RAATTY | 5 cut(s) | 677, 766, 917, 1324, 1629 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 687, 1101 |
| AspS9I | GGNCC | 1 cut(s) | 240 |
| AsuHPI | GGTGA | 1 cut(s) | 310 |
| AsuII | TTCGAA | 1 cut(s) | 261 |
| AvaI | CYCGRG | 1 cut(s) | 305 |
| BbsI | GAAGAC | 2 cut(s) | 728, 1405 |
| BbvI | GCAGC | 4 cut(s) | 763, 1050, 1511, 1682 |
| BccI | CCATC | 9 cut(s) | 344, 369, 665, 740, 800, 845, 1293, 1552, 1645 |
| BceAI | ACGGC | 1 cut(s) | 1465 |
| BciT130I | CCWGG | 1 cut(s) | 822 |
| BcoDI | GTCTC | 3 cut(s) | 112, 396, 648 |
| BfaI | CTAG | 3 cut(s) | 576, 1334, 1395 |
| BfmI | CTRYAG | 2 cut(s) | 1064, 1668 |
| BfrI | CTTAAG | 2 cut(s) | 959, 1658 |
| BisI | GCNGC | 5 cut(s) | 777, 993, 1064, 1500, 1671 |
| BlsI | GCNGC | 5 cut(s) | 778, 994, 1065, 1501, 1672 |
| BmcAI | AGTACT | 1 cut(s) | 832 |
| Bme1390I | CCNGG | 1 cut(s) | 822 |
| BmeT110I | CYCGRG | 1 cut(s) | 305 |
| BmgT120I | GGNCC | 1 cut(s) | 240 |
| BmiI | GGNNCC | 2 cut(s) | 132, 819 |
| BmrFI | CCNGG | 1 cut(s) | 822 |
| BmrI | ACTGGG | 2 cut(s) | 136, 247 |
| BmsI | GCATC | 2 cut(s) | 763, 1262 |
| BmuI | ACTGGG | 2 cut(s) | 136, 247 |
| BpiI | GAAGAC | 2 cut(s) | 728, 1405 |
| BpmI | CTGGAG | 1 cut(s) | 167 |
| Bpu14I | TTCGAA | 1 cut(s) | 261 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1273 |
| BsaI | GGTCTC | 1 cut(s) | 648 |
| BsaWI | WCCGGW | 1 cut(s) | 1351 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 74, 104 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 57, 1183 |
| Bse1I | ACTGG | 5 cut(s) | 42, 131, 242, 423, 631 |
| Bse3DI | GCAATG | 3 cut(s) | 542, 544, 1421 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1273 |
| BseBI | CCWGG | 1 cut(s) | 822 |
| BseGI | GGATG | 8 cut(s) | 189, 291, 751, 877, 1061, 1150, 1228, 1465 |
| BseJI | GATNNNNATC | 1 cut(s) | 1273 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 57, 1183 |
| BseMI | GCAATG | 3 cut(s) | 542, 544, 1421 |
| BseMII | CTCAG | 4 cut(s) | 407, 668, 1188, 1604 |
| BseNI | ACTGG | 5 cut(s) | 42, 131, 242, 423, 631 |
| BseRI | GAGGAG | 5 cut(s) | 91, 128, 162, 1214, 1519 |
| BseXI | GCAGC | 4 cut(s) | 763, 1050, 1511, 1682 |
| BshFI | GGCC | 3 cut(s) | 242, 315, 1622 |
| BsiHKCI | CYCGRG | 1 cut(s) | 305 |
| BsiSI | CCGG | 1 cut(s) | 1352 |
| BslFI | GGGAC | 2 cut(s) | 34, 1668 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 57, 1183 |
| BsmAI | GTCTC | 3 cut(s) | 112, 396, 648 |
| BsmBI | CGTCTC | 1 cut(s) | 112 |
| BsmFI | GGGAC | 2 cut(s) | 34, 1668 |
| BsmI | GAATGC | 1 cut(s) | 1697 |
| BsnI | GGCC | 3 cut(s) | 242, 315, 1622 |
| Bso31I | GGTCTC | 1 cut(s) | 648 |
| BsoBI | CYCGRG | 1 cut(s) | 305 |
| Bsp119I | TTCGAA | 1 cut(s) | 261 |
| Bsp1407I | TGTACA | 1 cut(s) | 379 |
| Bsp143I | GATC | 3 cut(s) | 186, 1193, 1578 |
| BspACI | CCGC | 2 cut(s) | 327, 992 |
| BspANI | GGCC | 3 cut(s) | 242, 315, 1622 |
| BspCNI | CTCAG | 4 cut(s) | 406, 667, 1189, 1605 |
| BspHI | TCATGA | 2 cut(s) | 1581, 1633 |
| BspLI | GGNNCC | 2 cut(s) | 132, 819 |
| BspMAI | CTGCAG | 2 cut(s) | 1068, 1672 |
| BspQI | GCTCTTC | 1 cut(s) | 1182 |
| BspT104I | TTCGAA | 1 cut(s) | 261 |
| BspTI | CTTAAG | 2 cut(s) | 959, 1658 |
| BspTNI | GGTCTC | 1 cut(s) | 648 |
| BsrDI | GCAATG | 3 cut(s) | 542, 544, 1421 |
| BsrGI | TGTACA | 1 cut(s) | 379 |
| BsrI | ACTGG | 5 cut(s) | 42, 131, 242, 423, 631 |
| BssMI | GATC | 3 cut(s) | 186, 1193, 1578 |
| Bst2UI | CCWGG | 1 cut(s) | 822 |
| Bst4CI | ACNGT | 2 cut(s) | 384, 1430 |
| Bst6I | CTCTTC | 1 cut(s) | 1182 |
| BstAFI | CTTAAG | 2 cut(s) | 959, 1658 |
| BstAUI | TGTACA | 1 cut(s) | 379 |
| BstBI | TTCGAA | 1 cut(s) | 261 |
| BstC8I | GCNNGC | 3 cut(s) | 535, 1068, 1292 |
| BstDEI | CTNAG | 6 cut(s) | 85, 393, 654, 692, 1197, 1613 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1181 |
| BstF5I | GGATG | 8 cut(s) | 189, 291, 751, 877, 1061, 1150, 1228, 1465 |
| BstKTI | GATC | 3 cut(s) | 189, 1196, 1581 |
| BstMAI | GTCTC | 3 cut(s) | 112, 396, 648 |
| BstMBI | GATC | 3 cut(s) | 186, 1193, 1578 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 86, 539, 1569 |
| BstNI | CCWGG | 1 cut(s) | 822 |
| BstNSI | RCATGY | 1 cut(s) | 861 |
| BstSCI | CCNGG | 1 cut(s) | 820 |
| BstSFI | CTRYAG | 2 cut(s) | 1064, 1668 |
| BstV1I | GCAGC | 4 cut(s) | 763, 1050, 1511, 1682 |
| BstV2I | GAAGAC | 2 cut(s) | 728, 1405 |
| BsuRI | GGCC | 3 cut(s) | 242, 315, 1622 |
| BtsCI | GGATG | 8 cut(s) | 189, 291, 751, 877, 1061, 1150, 1228, 1465 |
| BtsI | GCAGTG | 3 cut(s) | 280, 1527, 1570 |
| BtsIMutI | CAGTG | 4 cut(s) | 280, 430, 1527, 1570 |
| Cac8I | GCNNGC | 3 cut(s) | 535, 1068, 1292 |
| CciI | TCATGA | 2 cut(s) | 1581, 1633 |
| Cfr13I | GGNCC | 1 cut(s) | 240 |
| CseI | GACGC | 1 cut(s) | 129 |
| CsiI | ACCWGGT | 1 cut(s) | 820 |
| Csp6I | GTAC | 5 cut(s) | 45, 380, 408, 831, 1478 |
| CviAII | CATG | 8 cut(s) | 365, 388, 639, 858, 1540, 1582, 1624, 1634 |
| CviQI | GTAC | 5 cut(s) | 45, 380, 408, 831, 1478 |
| DdeI | CTNAG | 6 cut(s) | 85, 393, 654, 692, 1197, 1613 |
| DpnI | GATC | 3 cut(s) | 188, 1195, 1580 |
| DpnII | GATC | 3 cut(s) | 186, 1193, 1578 |
| Eam1104I | CTCTTC | 1 cut(s) | 1182 |
| EarI | CTCTTC | 1 cut(s) | 1182 |
| Eco31I | GGTCTC | 1 cut(s) | 648 |
| Eco57I | CTGAAG | 1 cut(s) | 507 |
| Eco88I | CYCGRG | 1 cut(s) | 305 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1181 |
| EcoRI | GAATTC | 1 cut(s) | 1324 |
| EcoRII | CCWGG | 1 cut(s) | 820 |
| EcoT22I | ATGCAT | 3 cut(s) | 544, 1165, 1699 |
| Esp3I | CGTCTC | 1 cut(s) | 112 |
| FaeI | CATG | 8 cut(s) | 368, 391, 642, 861, 1543, 1585, 1627, 1637 |
| FaqI | GGGAC | 2 cut(s) | 34, 1668 |
| FatI | CATG | 8 cut(s) | 364, 387, 638, 857, 1539, 1581, 1623, 1633 |
| FauI | CCCGC | 1 cut(s) | 334 |
| Fnu4HI | GCNGC | 5 cut(s) | 777, 993, 1064, 1500, 1671 |
| FokI | GGATG | 8 cut(s) | 176, 278, 758, 884, 1068, 1157, 1235, 1472 |
| Fsp4HI | GCNGC | 5 cut(s) | 777, 993, 1064, 1500, 1671 |
| FspBI | CTAG | 3 cut(s) | 576, 1334, 1395 |
| GluI | GCNGC | 5 cut(s) | 777, 993, 1064, 1500, 1671 |
| GsuI | CTGGAG | 1 cut(s) | 167 |
| HaeIII | GGCC | 3 cut(s) | 242, 315, 1622 |
| HapII | CCGG | 1 cut(s) | 1352 |
| HgaI | GACGC | 1 cut(s) | 129 |
| Hin1II | CATG | 8 cut(s) | 368, 391, 642, 861, 1543, 1585, 1627, 1637 |
| HindIII | AAGCTT | 4 cut(s) | 24, 374, 965, 1570 |
| HinfI | GANTC | 8 cut(s) | 106, 413, 688, 719, 931, 950, 1409, 1585 |
| HpaII | CCGG | 1 cut(s) | 1352 |
| HphI | GGTGA | 1 cut(s) | 310 |
| Hpy166II | GTNNAC | 2 cut(s) | 636, 863 |
| Hpy188I | TCNGA | 3 cut(s) | 928, 1198, 1258 |
| Hpy188III | TCNNGA | 8 cut(s) | 184, 355, 848, 1266, 1334, 1395, 1582, 1634 |
| Hpy8I | GTNNAC | 2 cut(s) | 636, 863 |
| HpyAV | CCTTC | 2 cut(s) | 470, 531 |
| HpyCH4III | ACNGT | 2 cut(s) | 384, 1430 |
| HpyCH4IV | ACGT | 3 cut(s) | 47, 256, 1684 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 86, 539, 1569 |
| HpyF3I | CTNAG | 6 cut(s) | 85, 393, 654, 692, 1197, 1613 |
| HpySE526I | ACGT | 3 cut(s) | 47, 256, 1684 |
| Hsp92II | CATG | 8 cut(s) | 368, 391, 642, 861, 1543, 1585, 1627, 1637 |
| Kzo9I | GATC | 3 cut(s) | 186, 1193, 1578 |
| LguI | GCTCTTC | 1 cut(s) | 1182 |
| Lsp1109I | GCAGC | 4 cut(s) | 763, 1050, 1511, 1682 |
| LweI | GCATC | 2 cut(s) | 763, 1262 |
| MabI | ACCWGGT | 1 cut(s) | 820 |
| MaeI | CTAG | 3 cut(s) | 576, 1334, 1395 |
| MaeII | ACGT | 3 cut(s) | 47, 256, 1684 |
| MaeIII | GTNAC | 2 cut(s) | 1462, 1547 |
| MalI | GATC | 3 cut(s) | 188, 1195, 1580 |
| MboI | GATC | 3 cut(s) | 186, 1193, 1578 |
| MlyI | GAGTC | 1 cut(s) | 940 |
| MmeI | TCCRAC | 1 cut(s) | 319 |
| Mph1103I | ATGCAT | 3 cut(s) | 544, 1165, 1699 |
| MroXI | GAANNNNTTC | 2 cut(s) | 687, 1101 |
| MseI | TTAA | 6 cut(s) | 431, 549, 960, 1008, 1217, 1659 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1282 |
| MspCI | CTTAAG | 2 cut(s) | 959, 1658 |
| MspI | CCGG | 1 cut(s) | 1352 |
| MspR9I | CCNGG | 1 cut(s) | 822 |
| Mva1269I | GAATGC | 1 cut(s) | 1697 |
| MvaI | CCWGG | 1 cut(s) | 822 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 86, 539, 1569 |
| NdeII | GATC | 3 cut(s) | 186, 1193, 1578 |
| NlaIII | CATG | 8 cut(s) | 368, 391, 642, 861, 1543, 1585, 1627, 1637 |
| NlaIV | GGNNCC | 2 cut(s) | 132, 819 |
| NmuCI | GTSAC | 2 cut(s) | 1462, 1547 |
| NsiI | ATGCAT | 3 cut(s) | 544, 1165, 1699 |
| NspI | RCATGY | 1 cut(s) | 861 |
| NspV | TTCGAA | 1 cut(s) | 261 |
| PagI | TCATGA | 2 cut(s) | 1581, 1633 |
| PciSI | GCTCTTC | 1 cut(s) | 1182 |
| PctI | GAATGC | 1 cut(s) | 1697 |
| PdmI | GAANNNNTTC | 2 cut(s) | 687, 1101 |
| PfeI | GAWTC | 7 cut(s) | 106, 413, 688, 719, 950, 1409, 1585 |
| PkrI | GCNGC | 5 cut(s) | 778, 994, 1065, 1501, 1672 |
| PleI | GAGTC | 1 cut(s) | 939 |
| PpsI | GAGTC | 1 cut(s) | 939 |
| PsiI | TTATAA | 2 cut(s) | 1229, 1680 |
| Psp1406I | AACGTT | 1 cut(s) | 1684 |
| Psp6I | CCWGG | 1 cut(s) | 820 |
| PspGI | CCWGG | 1 cut(s) | 820 |
| PspN4I | GGNNCC | 2 cut(s) | 132, 819 |
| PspPI | GGNCC | 1 cut(s) | 240 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 823, 855 |
| PstI | CTGCAG | 2 cut(s) | 1068, 1672 |
| RsaI | GTAC | 5 cut(s) | 46, 381, 409, 832, 1479 |
| RsaNI | GTAC | 5 cut(s) | 45, 380, 408, 831, 1478 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1282 |
| SapI | GCTCTTC | 1 cut(s) | 1182 |
| SaqAI | TTAA | 6 cut(s) | 431, 549, 960, 1008, 1217, 1659 |
| SatI | GCNGC | 5 cut(s) | 777, 993, 1064, 1500, 1671 |
| Sau3AI | GATC | 3 cut(s) | 186, 1193, 1578 |
| Sau96I | GGNCC | 1 cut(s) | 240 |
| ScaI | AGTACT | 1 cut(s) | 832 |
| SchI | GAGTC | 1 cut(s) | 940 |
| ScrFI | CCNGG | 1 cut(s) | 822 |
| SexAI | ACCWGGT | 1 cut(s) | 820 |
| SfaNI | GCATC | 2 cut(s) | 763, 1262 |
| SfcI | CTRYAG | 2 cut(s) | 1064, 1668 |
| SfuI | TTCGAA | 1 cut(s) | 261 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1282 |
| SmlI | CTYRAG | 2 cut(s) | 959, 1658 |
| SmoI | CTYRAG | 2 cut(s) | 959, 1658 |
| SsiI | CCGC | 2 cut(s) | 327, 992 |
| SspMI | CTAG | 3 cut(s) | 576, 1334, 1395 |
| StyD4I | CCNGG | 1 cut(s) | 820 |
| TaaI | ACNGT | 2 cut(s) | 384, 1430 |
| TaiI | ACGT | 3 cut(s) | 50, 259, 1687 |
| TaqI | TCGA | 3 cut(s) | 104, 261, 1209 |
| TatI | WGTACW | 3 cut(s) | 379, 830, 1477 |
| TauI | GCSGC | 1 cut(s) | 995 |
| TfiI | GAWTC | 7 cut(s) | 106, 413, 688, 719, 950, 1409, 1585 |
| Tru1I | TTAA | 6 cut(s) | 431, 549, 960, 1008, 1217, 1659 |
| Tru9I | TTAA | 6 cut(s) | 431, 549, 960, 1008, 1217, 1659 |
| TscAI | CASTG | 4 cut(s) | 287, 430, 1527, 1570 |
| TseFI | GTSAC | 2 cut(s) | 1462, 1547 |
| TseI | GCWGC | 4 cut(s) | 776, 1063, 1499, 1670 |
| Tsp45I | GTSAC | 2 cut(s) | 1462, 1547 |
| TspDTI | ATGAA | 5 cut(s) | 585, 1362, 1622, 1640, 1653 |
| TspGWI | ACGGA | 1 cut(s) | 1417 |
| TspRI | CASTG | 4 cut(s) | 287, 430, 1527, 1570 |
| Vha464I | CTTAAG | 2 cut(s) | 959, 1658 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1181 |
| XapI | RAATTY | 5 cut(s) | 677, 766, 917, 1324, 1629 |
| XbaI | TCTAGA | 2 cut(s) | 1333, 1394 |
| XceI | RCATGY | 1 cut(s) | 861 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 337 |
| XmnI | GAANNNNTTC | 2 cut(s) | 687, 1101 |
| XspI | CTAG | 3 cut(s) | 576, 1334, 1395 |
| ZrmI | AGTACT | 1 cut(s) | 832 |
| Zsp2I | ATGCAT | 3 cut(s) | 544, 1165, 1699 |