Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G21170 |
| fragaria_vesca | FvH4_3g02620 |
| malus_domestica | MD00G1180200.v1.1 |
| prunus_persica | Prupe.4G025500_v2.0.a1 |
| pyrus_communis | pycom05g31090 |
| rosa_chinensis | RchiOBHm_Chr5g0003911 |
| rosa_laevigata | RLG00000031187 |
| rosa_multiflora | Rmu_sc0011733.1_g000003 Rmu_sc0019391.1_g000005 |
| rosa_roxburghii | Rroxscaffold_1G00072060 |
| rosa_rugosa | Rorug04G0407800 |
| rosa_samantha | Rh5CG037900 Rh5DG034100 |
| rosa_wichuraiana | Rw5G003240 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 420 |
| AcsI | RAATTY | 3 cut(s) | 64, 262, 325 |
| AfaI | GTAC | 2 cut(s) | 155, 346 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 276 |
| AgsI | TTSAA | 3 cut(s) | 38, 247, 330 |
| AjnI | CCWGG | 1 cut(s) | 211 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 168, 200 |
| AluBI | AGCT | 2 cut(s) | 243, 337 |
| AluI | AGCT | 2 cut(s) | 243, 337 |
| Alw21I | GWGCWC | 1 cut(s) | 234 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 340 |
| AoxI | GGCC | 1 cut(s) | 74 |
| ApeKI | GCWGC | 2 cut(s) | 337, 340 |
| ApoI | RAATTY | 3 cut(s) | 64, 262, 325 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 133, 165 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 317 |
| AsuHPI | GGTGA | 2 cut(s) | 40, 116 |
| Bbv12I | GWGCWC | 1 cut(s) | 234 |
| BbvI | GCAGC | 2 cut(s) | 324, 327 |
| BciT130I | CCWGG | 1 cut(s) | 213 |
| BfaI | CTAG | 1 cut(s) | 144 |
| BisI | GCNGC | 2 cut(s) | 338, 341 |
| BlsI | GCNGC | 2 cut(s) | 339, 342 |
| Bme1390I | CCNGG | 1 cut(s) | 213 |
| BmiI | GGNNCC | 1 cut(s) | 400 |
| BmrFI | CCNGG | 1 cut(s) | 213 |
| BpuEI | CTTGAG | 1 cut(s) | 235 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 276 |
| Bse1I | ACTGG | 1 cut(s) | 400 |
| Bse3DI | GCAATG | 1 cut(s) | 305 |
| BseBI | CCWGG | 1 cut(s) | 213 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 276 |
| BseMI | GCAATG | 1 cut(s) | 305 |
| BseMII | CTCAG | 3 cut(s) | 210, 397, 422 |
| BseNI | ACTGG | 1 cut(s) | 400 |
| BseRI | GAGGAG | 1 cut(s) | 292 |
| BseXI | GCAGC | 2 cut(s) | 324, 327 |
| BseYI | CCCAGC | 1 cut(s) | 114 |
| BshFI | GGCC | 1 cut(s) | 76 |
| BsiHKAI | GWGCWC | 1 cut(s) | 234 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 276 |
| BsmI | GAATGC | 1 cut(s) | 307 |
| BsnI | GGCC | 1 cut(s) | 76 |
| Bsp1286I | GDGCHC | 1 cut(s) | 234 |
| Bsp1407I | TGTACA | 1 cut(s) | 153 |
| BspANI | GGCC | 1 cut(s) | 76 |
| BspCNI | CTCAG | 3 cut(s) | 211, 396, 421 |
| BspLI | GGNNCC | 1 cut(s) | 400 |
| BsrDI | GCAATG | 1 cut(s) | 305 |
| BsrGI | TGTACA | 1 cut(s) | 153 |
| BsrI | ACTGG | 1 cut(s) | 400 |
| Bst2UI | CCWGG | 1 cut(s) | 213 |
| Bst6I | CTCTTC | 1 cut(s) | 269 |
| BstAUI | TGTACA | 1 cut(s) | 153 |
| BstC8I | GCNNGC | 1 cut(s) | 414 |
| BstDEI | CTNAG | 3 cut(s) | 219, 383, 408 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 349 |
| BstNI | CCWGG | 1 cut(s) | 213 |
| BstNSI | RCATGY | 2 cut(s) | 379, 416 |
| BstSCI | CCNGG | 1 cut(s) | 211 |
| BstV1I | GCAGC | 2 cut(s) | 324, 327 |
| BsuRI | GGCC | 1 cut(s) | 76 |
| Cac8I | GCNNGC | 1 cut(s) | 414 |
| CaiI | CAGNNNCTG | 1 cut(s) | 340 |
| Csp6I | GTAC | 2 cut(s) | 154, 345 |
| CviAII | CATG | 2 cut(s) | 376, 413 |
| CviJI | RGCY | 8 cut(s) | 76, 118, 243, 269, 337, 352, 388, 399 |
| CviKI_1 | RGCY | 8 cut(s) | 76, 118, 243, 269, 337, 352, 388, 399 |
| CviQI | GTAC | 2 cut(s) | 154, 345 |
| DdeI | CTNAG | 3 cut(s) | 219, 383, 408 |
| Eam1104I | CTCTTC | 1 cut(s) | 269 |
| EarI | CTCTTC | 1 cut(s) | 269 |
| EcoRI | GAATTC | 1 cut(s) | 64 |
| EcoRII | CCWGG | 1 cut(s) | 211 |
| EcoT22I | ATGCAT | 1 cut(s) | 307 |
| FaeI | CATG | 2 cut(s) | 379, 416 |
| FaiI | YATR | 6 cut(s) | 24, 61, 111, 363, 377, 414 |
| FatI | CATG | 2 cut(s) | 375, 412 |
| FblI | GTMKAC | 1 cut(s) | 420 |
| Fnu4HI | GCNGC | 2 cut(s) | 338, 341 |
| Fsp4HI | GCNGC | 2 cut(s) | 338, 341 |
| FspBI | CTAG | 1 cut(s) | 144 |
| GluI | GCNGC | 2 cut(s) | 338, 341 |
| GsaI | CCCAGC | 1 cut(s) | 118 |
| HaeIII | GGCC | 1 cut(s) | 76 |
| Hin1II | CATG | 2 cut(s) | 379, 416 |
| HincII | GTYRAC | 1 cut(s) | 421 |
| HindII | GTYRAC | 1 cut(s) | 421 |
| HinfI | GANTC | 1 cut(s) | 368 |
| HphI | GGTGA | 2 cut(s) | 40, 116 |
| Hpy166II | GTNNAC | 2 cut(s) | 31, 421 |
| Hpy188I | TCNGA | 3 cut(s) | 70, 220, 258 |
| Hpy8I | GTNNAC | 2 cut(s) | 31, 421 |
| HpyAV | CCTTC | 1 cut(s) | 32 |
| HpyCH4V | TGCA | 2 cut(s) | 170, 305 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 349 |
| HpyF3I | CTNAG | 3 cut(s) | 219, 383, 408 |
| Hsp92II | CATG | 2 cut(s) | 379, 416 |
| LmnI | GCTCC | 1 cut(s) | 404 |
| LpnPI | CCDG | 9 cut(s) | 29, 87, 128, 132, 198, 225, 357, 370, 381 |
| Lsp1109I | GCAGC | 2 cut(s) | 324, 327 |
| MaeI | CTAG | 1 cut(s) | 144 |
| MaeIII | GTNAC | 1 cut(s) | 104 |
| MboII | GAAGA | 3 cut(s) | 200, 286, 307 |
| MhlI | GDGCHC | 1 cut(s) | 234 |
| MluCI | AATT | 4 cut(s) | 12, 64, 262, 325 |
| MlyI | GAGTC | 1 cut(s) | 377 |
| MnlI | CCTC | 2 cut(s) | 87, 270 |
| Mph1103I | ATGCAT | 1 cut(s) | 307 |
| MroXI | GAANNNNTTC | 1 cut(s) | 317 |
| MseI | TTAA | 2 cut(s) | 11, 15 |
| MspA1I | CMGCKG | 1 cut(s) | 337 |
| MspR9I | CCNGG | 1 cut(s) | 213 |
| Mva1269I | GAATGC | 1 cut(s) | 307 |
| MvaI | CCWGG | 1 cut(s) | 213 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 349 |
| NlaIII | CATG | 2 cut(s) | 379, 416 |
| NlaIV | GGNNCC | 1 cut(s) | 400 |
| NmuCI | GTSAC | 1 cut(s) | 104 |
| NsiI | ATGCAT | 1 cut(s) | 307 |
| NspI | RCATGY | 2 cut(s) | 379, 416 |
| PacI | TTAATTAA | 1 cut(s) | 15 |
| PaeI | GCATGC | 1 cut(s) | 416 |
| PctI | GAATGC | 1 cut(s) | 307 |
| PdmI | GAANNNNTTC | 1 cut(s) | 317 |
| PkrI | GCNGC | 2 cut(s) | 339, 342 |
| PleI | GAGTC | 1 cut(s) | 376 |
| PpsI | GAGTC | 1 cut(s) | 376 |
| Psp6I | CCWGG | 1 cut(s) | 211 |
| PspFI | CCCAGC | 1 cut(s) | 114 |
| PspGI | CCWGG | 1 cut(s) | 211 |
| PspN4I | GGNNCC | 1 cut(s) | 400 |
| PstNI | CAGNNNCTG | 1 cut(s) | 340 |
| PvuII | CAGCTG | 1 cut(s) | 337 |
| RsaI | GTAC | 2 cut(s) | 155, 346 |
| RsaNI | GTAC | 2 cut(s) | 154, 345 |
| SalI | GTCGAC | 1 cut(s) | 419 |
| SaqAI | TTAA | 2 cut(s) | 11, 15 |
| SatI | GCNGC | 2 cut(s) | 338, 341 |
| SchI | GAGTC | 1 cut(s) | 377 |
| ScrFI | CCNGG | 1 cut(s) | 213 |
| SduI | GDGCHC | 1 cut(s) | 234 |
| SetI | ASST | 4 cut(s) | 36, 106, 245, 339 |
| SmlI | CTYRAG | 1 cut(s) | 250 |
| SmoI | CTYRAG | 1 cut(s) | 250 |
| SphI | GCATGC | 1 cut(s) | 416 |
| Sse9I | AATT | 4 cut(s) | 12, 64, 262, 325 |
| SspI | AATATT | 1 cut(s) | 56 |
| SspMI | CTAG | 1 cut(s) | 144 |
| StyD4I | CCNGG | 1 cut(s) | 211 |
| TaqI | TCGA | 1 cut(s) | 420 |
| TasI | AATT | 4 cut(s) | 12, 64, 262, 325 |
| TatI | WGTACW | 1 cut(s) | 153 |
| Tru1I | TTAA | 2 cut(s) | 11, 15 |
| Tru9I | TTAA | 2 cut(s) | 11, 15 |
| TseFI | GTSAC | 1 cut(s) | 104 |
| TseI | GCWGC | 2 cut(s) | 337, 340 |
| Tsp45I | GTSAC | 1 cut(s) | 104 |
| TspDTI | ATGAA | 4 cut(s) | 17, 187, 189, 314 |
| XapI | RAATTY | 3 cut(s) | 64, 262, 325 |
| XceI | RCATGY | 2 cut(s) | 379, 416 |
| XmiI | GTMKAC | 1 cut(s) | 420 |
| XmnI | GAANNNNTTC | 1 cut(s) | 317 |
| XspI | CTAG | 1 cut(s) | 144 |
| Zsp2I | ATGCAT | 1 cut(s) | 307 |