Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0016541

Physical Location & Seq

Genomic Coordinates Forward (+)

30961356 .. 30962768

Gene Structure 1413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g31090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGATCCAGACCCATCACGTATCGGAGCTTCTTCAGAGCTTCACTCAGGCATGTGAAGGTACAGATTCTCAATCCGAAATGTTGAGTTTTGTTCTTGGATGCTATTCCAGAAAGGGTTTGTTTAGAGAAGGATTAGAAGTGTTTAGGAAGATGAATTCTCTGGGTTTTGTTCCTTCTGTTGTTTCGTGCAACGCTCTGCTTAATGCAATTCAGAGAGAAAACGAGATTAGATTGGCTTGGTGTTTCTATGGCGTTATGTTCCGGAACGGGGTTTTAGGAGACAGGTTTACGTGGTCTCTCGTTGCTCAGATTCTTTGTAAAGATGGAAAATTTGAGAGAATTGTTAGGATTTTCGATTCGGGCGTTTATAATTCTGTAATGTATGATCTTCTTGTGGATGGTTATAGCAAAAGTGGCGATTTTGATGCTGCATTTTACCGTTTGAATGAGATGTGTGATAAAAAAATGGACCCGGGGTTTAGTATTTATAGCTCTGTTCTTGATGGAGCATGTAAACTTGGGGCTGTGGAAGTGGTTGAAAGTGTGATGAACACTATGATAGAGAAGAAATTGCTTCCAAAAAGTCGTTTCTCTGAGTATGATTTGATAGTTGAGAAGCTTTGTGAGTTGGGTAAAACGAATGCAGCTGAGATGTTCTTTAAGAAGGCGTGTGATGAGAAGATTGGATTGCAGGATGCTACTTATGGGCTTGTGCTGAAGGCATTTACTAATGAAGTGAGAACAAAAGACGCAATTCATGTGTACCATCTGATTTCTGAAAGGGGTATTGTAGTGGATGACAGTAGTTGTCGTGCATTTGCAGATCTTCTTTGCAAGGAACTGCGGTCTGATGAAGGGTTCGAGTTGTTAATGGATGTTATAAGAAGAGGGTTTTGCCCGTGTGCATCGGAATTGTCTGGATTTATATCGTTTCTATGTCGTAGGGGTAGATGGGGAGAGGCTGAAGATCTATTGAATGTAGTTATAGACAAGGGGCTTCAACCGGACTTGGATTTGATTTGTTGTTCGTCATTGGTGCGTCGTTACTGCTCTAGAAGACAGATTGATTCGGCTCTTGCATTGCATAACAAGATGGAAAAATTGGATGGCAGTTTGGATGCTACAACCTACAATGTACTTCTCAGCGGACTGTTTGCAGCAAGGAGGATTGAAGAAGCAATTAGAGTGTTCGATTACATGAGACAGCGCGGTTTGATGAGCAGTGCAAGCTTTACGATCATGATTCGCGGGCTTTGTGGTGTGAAGGAATTGAGAAGGGCTATGAAACTTCATGATGAAATGTTGAAGATGAGGCTTAAACCTGATGCAGCAACTTATAAACGGTTGATTTCTGGATTCCAAGTAACCTTATCGAACTTACAAACTATAAGTGAGGATAATGAAGCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009536 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

471

Amino Acids

53.2

Weight (kDa)

6.63

Isoelectric Point (pI)

44.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	58 - 107	4.8e-07	PPR repeat family
PPR_2	PF13041	124 - 172	1.5e-06	PPR repeat family
PPR_2	PF13041	338 - 384	1e-07	PPR repeat family
PPR_1	PF12854	372 - 401	7.4e-06	PPR repeat
PPR_2	PF13041	373 - 419	2.9e-12	PPR repeat family
PPR	PF01535	376 - 405	6.3e-06	PPR repeat
PPR_2	PF13041	408 - 453	1.5e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016541)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21170
fragaria_vesca	FvH4_3g02620
malus_domestica	MD00G1180200.v1.1
prunus_persica	Prupe.4G025500_v2.0.a1
pyrus_communis	pycom05g31090
rosa_chinensis	RchiOBHm_Chr5g0003911
rosa_laevigata	RLG00000031187
rosa_multiflora	Rmu_sc0011733.1_g000003 Rmu_sc0019391.1_g000005
rosa_roxburghii	Rroxscaffold_1G00072060
rosa_rugosa	Rorug04G0407800
rosa_samantha	Rh5CG037900 Rh5DG034100
rosa_wichuraiana	Rw5G003240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	369, 881, 1338
AccII	CGCG	2 cut(s)	1209, 1248
AccIII	TCCGGA	1 cut(s)	261
AciI	CCGC	4 cut(s)	844, 1146, 1209, 1248
AcsI	RAATTY	2 cut(s)	154, 329
AcuI	CTGAAG	3 cut(s)	17, 737, 984
AfaI	GTAC	3 cut(s)	61, 764, 1137
AfiI	CCNNNNNNNGG	1 cut(s)	268
AgsI	TTSAA	6 cut(s)	445, 539, 976, 1001, 1172, 1306
AluBI	AGCT	6 cut(s)	28, 39, 492, 619, 647, 1230
AluI	AGCT	6 cut(s)	28, 39, 492, 619, 647, 1230
Alw26I	GTCTC	3 cut(s)	273, 300, 1195
Ama87I	CYCGRG	1 cut(s)	472
Aor13HI	TCCGGA	1 cut(s)	261
ApeKI	GCWGC	4 cut(s)	428, 644, 1157, 1328
ApoI	RAATTY	2 cut(s)	154, 329
AspLEI	GCGC	1 cut(s)	1209
AspS9I	GGNCC	1 cut(s)	469
AsuC2I	CCSGG	2 cut(s)	473, 474
AvaI	CYCGRG	1 cut(s)	472
AvaII	GGWCC	1 cut(s)	469
BarI	GAAGNNNNNNTAC	2 cut(s)	12, 44
BbsI	GAAGAC	1 cut(s)	1063
BbvI	GCAGC	4 cut(s)	415, 656, 1169, 1340
BccI	CCATC	8 cut(s)	21, 317, 392, 497, 774, 945, 1087, 1100
BcgI	CGANNNNNNTGC	2 cut(s)	407, 441
BcnI	CCSGG	2 cut(s)	473, 474
BcoDI	GTCTC	3 cut(s)	273, 300, 1195
BfaI	CTAG	1 cut(s)	1053
BglII	AGATCT	2 cut(s)	823, 967
BisI	GCNGC	4 cut(s)	429, 645, 1158, 1329
BlsI	GCNGC	4 cut(s)	430, 646, 1159, 1330
Bme1390I	CCNGG	2 cut(s)	473, 474
Bme18I	GGWCC	1 cut(s)	469
BmeT110I	CYCGRG	1 cut(s)	472
BmgT120I	GGNCC	1 cut(s)	469
BmiI	GGNNCC	1 cut(s)	471
BmrFI	CCNGG	2 cut(s)	473, 474
BmsI	GCATC	6 cut(s)	89, 415, 685, 914, 1108, 1315
BpiI	GAAGAC	1 cut(s)	1063
BplI	GAGNNNNNCTC	2 cut(s)	28, 60
BpuMI	CCSGG	2 cut(s)	473, 474
BsaAI	YACGTR	2 cut(s)	19, 291
BsaBI	GATNNNNATC	1 cut(s)	925
BsaI	GGTCTC	1 cut(s)	300
BsaJI	CCNNGG	2 cut(s)	472, 473
BsaWI	WCCGGW	2 cut(s)	261, 1003
Bsc4I	CCNNNNNNNGG	1 cut(s)	268
Bse3DI	GCAATG	1 cut(s)	1079
Bse8I	GATNNNNATC	1 cut(s)	925
BseAI	TCCGGA	1 cut(s)	261
BseDI	CCNNGG	2 cut(s)	472, 473
BseGI	GGATG	7 cut(s)	104, 403, 700, 802, 880, 1111, 1123
BseJI	GATNNNNATC	1 cut(s)	925
BseLI	CCNNNNNNNGG	1 cut(s)	268
BseMI	GCAATG	1 cut(s)	1079
BseMII	CTCAG	5 cut(s)	59, 320, 585, 639, 1156
BseXI	GCAGC	4 cut(s)	415, 656, 1169, 1340
Bsh1236I	CGCG	2 cut(s)	1209, 1248
BsiHKCI	CYCGRG	1 cut(s)	472
BsiSI	CCGG	3 cut(s)	262, 473, 1004
BslI	CCNNNNNNNGG	1 cut(s)	268
BsmAI	GTCTC	3 cut(s)	273, 300, 1195
BsmI	GAATGC	1 cut(s)	646
Bso31I	GGTCTC	1 cut(s)	300
BsoBI	CYCGRG	1 cut(s)	472
Bsp13I	TCCGGA	1 cut(s)	261
Bsp143I	GATC	5 cut(s)	3, 385, 823, 967, 1236
BspACI	CCGC	4 cut(s)	844, 1146, 1209, 1248
BspCNI	CTCAG	5 cut(s)	58, 319, 586, 640, 1155
BspEI	TCCGGA	1 cut(s)	261
BspFNI	CGCG	2 cut(s)	1209, 1248
BspHI	TCATGA	2 cut(s)	1239, 1291
BspLI	GGNNCC	1 cut(s)	471
BspTNI	GGTCTC	1 cut(s)	300
BsrDI	GCAATG	1 cut(s)	1079
BssECI	CCNNGG	2 cut(s)	472, 473
BssMI	GATC	5 cut(s)	3, 385, 823, 967, 1236
Bst4CI	ACNGT	4 cut(s)	440, 803, 1152, 1344
Bst6I	CTCTTC	1 cut(s)	880
BstBAI	YACGTR	2 cut(s)	19, 291
BstC8I	GCNNGC	2 cut(s)	1228, 1250
BstDEI	CTNAG	5 cut(s)	45, 306, 594, 648, 1142
BstF5I	GGATG	7 cut(s)	104, 403, 700, 802, 880, 1111, 1123
BstFNI	CGCG	2 cut(s)	1209, 1248
BstHHI	GCGC	1 cut(s)	1209
BstKTI	GATC	5 cut(s)	6, 388, 826, 970, 1239
BstMAI	GTCTC	3 cut(s)	273, 300, 1195
BstMBI	GATC	5 cut(s)	3, 385, 823, 967, 1236
BstMWI	GCNNNNNNNGC	2 cut(s)	414, 1227
BstNSI	RCATGY	2 cut(s)	54, 513
BstSCI	CCNGG	2 cut(s)	471, 472
BstUI	CGCG	2 cut(s)	1209, 1248
BstV1I	GCAGC	4 cut(s)	415, 656, 1169, 1340
BstV2I	GAAGAC	1 cut(s)	1063
BstX2I	RGATCY	2 cut(s)	823, 967
BstYI	RGATCY	2 cut(s)	823, 967
BtsCI	GGATG	7 cut(s)	104, 403, 700, 802, 880, 1111, 1123
BtsI	GCAGTG	1 cut(s)	1228
BtsIMutI	CAGTG	1 cut(s)	1228
Cac8I	GCNNGC	2 cut(s)	1228, 1250
CciI	TCATGA	2 cut(s)	1239, 1291
CfoI	GCGC	1 cut(s)	1209
Cfr13I	GGNCC	1 cut(s)	469
Cfr9I	CCCGGG	1 cut(s)	472
CseI	GACGC	2 cut(s)	758, 1028
Csp6I	GTAC	3 cut(s)	60, 763, 1136
CviAII	CATG	6 cut(s)	51, 510, 758, 1198, 1240, 1292
CviQI	GTAC	3 cut(s)	60, 763, 1136
DdeI	CTNAG	5 cut(s)	45, 306, 594, 648, 1142
DpnI	GATC	5 cut(s)	5, 387, 825, 969, 1238
DpnII	GATC	5 cut(s)	3, 385, 823, 967, 1236
Eam1104I	CTCTTC	1 cut(s)	880
EarI	CTCTTC	1 cut(s)	880
Eco31I	GGTCTC	1 cut(s)	300
Eco47I	GGWCC	1 cut(s)	469
Eco57I	CTGAAG	3 cut(s)	17, 737, 984
Eco88I	CYCGRG	1 cut(s)	472
EcoRI	GAATTC	1 cut(s)	154
FaeI	CATG	6 cut(s)	54, 513, 761, 1201, 1243, 1295
FatI	CATG	6 cut(s)	50, 509, 757, 1197, 1239, 1291
FauI	CCCGC	1 cut(s)	1241
Fnu4HI	GCNGC	4 cut(s)	429, 645, 1158, 1329
FokI	GGATG	7 cut(s)	111, 410, 707, 809, 887, 1118, 1130
Fsp4HI	GCNGC	4 cut(s)	429, 645, 1158, 1329
FspBI	CTAG	1 cut(s)	1053
GlaI	GCGC	1 cut(s)	1208
GluI	GCNGC	4 cut(s)	429, 645, 1158, 1329
HapII	CCGG	3 cut(s)	262, 473, 1004
HgaI	GACGC	2 cut(s)	758, 1028
HhaI	GCGC	1 cut(s)	1209
Hin1II	CATG	6 cut(s)	54, 513, 761, 1201, 1243, 1295
Hin6I	GCGC	1 cut(s)	1207
HinP1I	GCGC	1 cut(s)	1207
HindIII	AAGCTT	2 cut(s)	617, 1228
HinfI	GANTC	6 cut(s)	65, 310, 356, 1067, 1243, 1356
HpaII	CCGG	3 cut(s)	262, 473, 1004
Hpy166II	GTNNAC	3 cut(s)	288, 515, 763
Hpy188III	TCNNGA	9 cut(s)	7, 108, 262, 500, 918, 1053, 1240, 1292, 1353
Hpy8I	GTNNAC	3 cut(s)	288, 515, 763
Hpy99I	CGWCG	1 cut(s)	1044
HpyAV	CCTTC	8 cut(s)	50, 122, 183, 658, 712, 848, 1258, 1269
HpyCH4III	ACNGT	4 cut(s)	440, 803, 1152, 1344
HpyCH4IV	ACGT	2 cut(s)	18, 290
HpyF10VI	GCNNNNNNNGC	2 cut(s)	414, 1227
HpyF3I	CTNAG	5 cut(s)	45, 306, 594, 648, 1142
HpySE526I	ACGT	2 cut(s)	18, 290
Hsp92II	CATG	6 cut(s)	54, 513, 761, 1201, 1243, 1295
HspAI	GCGC	1 cut(s)	1207
Kpn2I	TCCGGA	1 cut(s)	261
Kzo9I	GATC	5 cut(s)	3, 385, 823, 967, 1236
LmnI	GCTCC	2 cut(s)	25, 506
Lsp1109I	GCAGC	4 cut(s)	415, 656, 1169, 1340
LweI	GCATC	6 cut(s)	89, 415, 685, 914, 1108, 1315
MaeI	CTAG	1 cut(s)	1053
MaeII	ACGT	2 cut(s)	18, 290
MaeIII	GTNAC	2 cut(s)	1043, 1363
MalI	GATC	5 cut(s)	5, 387, 825, 969, 1238
MboI	GATC	5 cut(s)	3, 385, 823, 967, 1236
MflI	RGATCY	2 cut(s)	823, 967
MnlI	CCTC	5 cut(s)	881, 952, 1158, 1305, 1387
MroI	TCCGGA	1 cut(s)	261
MseI	TTAA	4 cut(s)	201, 660, 869, 1317
MspA1I	CMGCKG	2 cut(s)	647, 1146
MspI	CCGG	3 cut(s)	262, 473, 1004
MspR9I	CCNGG	2 cut(s)	473, 474
Mva1269I	GAATGC	1 cut(s)	646
MvnI	CGCG	2 cut(s)	1209, 1248
MwoI	GCNNNNNNNGC	2 cut(s)	414, 1227
NciI	CCSGG	2 cut(s)	473, 474
NdeII	GATC	5 cut(s)	3, 385, 823, 967, 1236
NlaIII	CATG	6 cut(s)	54, 513, 761, 1201, 1243, 1295
NlaIV	GGNNCC	1 cut(s)	471
NspI	RCATGY	2 cut(s)	54, 513
PagI	TCATGA	2 cut(s)	1239, 1291
PcsI	WCGNNNNNNNCGW	1 cut(s)	360
PctI	GAATGC	1 cut(s)	646
PfeI	GAWTC	6 cut(s)	65, 310, 356, 1067, 1243, 1356
PkrI	GCNGC	4 cut(s)	430, 646, 1159, 1330
Ppu21I	YACGTR	2 cut(s)	19, 291
PsiI	TTATAA	3 cut(s)	369, 881, 1338
PspN4I	GGNNCC	1 cut(s)	471
PspPI	GGNCC	1 cut(s)	469
PsuI	RGATCY	2 cut(s)	823, 967
PvuII	CAGCTG	1 cut(s)	647
RsaI	GTAC	3 cut(s)	61, 764, 1137
RsaNI	GTAC	3 cut(s)	60, 763, 1136
SaqAI	TTAA	4 cut(s)	201, 660, 869, 1317
SatI	GCNGC	4 cut(s)	429, 645, 1158, 1329
Sau3AI	GATC	5 cut(s)	3, 385, 823, 967, 1236
Sau96I	GGNCC	1 cut(s)	469
ScrFI	CCNGG	2 cut(s)	473, 474
SfaNI	GCATC	6 cut(s)	89, 415, 685, 914, 1108, 1315
SinI	GGWCC	1 cut(s)	469
SmaI	CCCGGG	1 cut(s)	474
SsiI	CCGC	4 cut(s)	844, 1146, 1209, 1248
SspMI	CTAG	1 cut(s)	1053
StyD4I	CCNGG	2 cut(s)	471, 472
TaaI	ACNGT	4 cut(s)	440, 803, 1152, 1344
TaiI	ACGT	2 cut(s)	21, 293
TaqI	TCGA	4 cut(s)	354, 861, 1191, 1373
TatI	WGTACW	1 cut(s)	1135
TfiI	GAWTC	6 cut(s)	65, 310, 356, 1067, 1243, 1356
Tru1I	TTAA	4 cut(s)	201, 660, 869, 1317
Tru9I	TTAA	4 cut(s)	201, 660, 869, 1317
TscAI	CASTG	1 cut(s)	1228
TseI	GCWGC	4 cut(s)	428, 644, 1157, 1328
TspDTI	ATGAA	8 cut(s)	167, 563, 746, 747, 867, 1280, 1298, 1311
TspMI	CCCGGG	1 cut(s)	472
TspRI	CASTG	1 cut(s)	1228
VpaK11BI	GGWCC	1 cut(s)	469
XapI	RAATTY	2 cut(s)	154, 329
XbaI	TCTAGA	1 cut(s)	1052
XceI	RCATGY	2 cut(s)	54, 513
XmaI	CCCGGG	1 cut(s)	472
XspI	CTAG	1 cut(s)	1053

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.