Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0016541

Physical Location & Seq

Genomic Coordinates Reverse (-)

1326638 .. 1327957

Gene Structure 1320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g02620.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGTTCAGGTTACAGGTACAGATTCTCTATCTAATGTCTTAAGTTTTGTGCTTGGTTGCTATGCAAGAAAGGGTTTGGTTAAAGAAGGCATAGAGGTTTATAGAGAAATGAGTGTTATTGGTTGTGTGCCTTCAGTTTTAGCTTGCAATGCATTGCTTGATGCAATGAGGCAAGGAAATGAGACTAGATTGGCTTGGTGTTTCTATGGGGTTATGATCAGAAATGGGGTTTTACCAGACCAGTTTACATGGTCTCTGGTTGCTCAGTTTCTCTGTAAAGATGGGAAATTTGAAAGGATTATTAGACTTTTAGATTTGGGTGTTTGTAATTCTATGTTTTATAGTCTTCTTGTGGATGGTTATAGCCAAAGTGGGAATTTTGATGCTGCATTTTGCTACTTGGAGAAAATGAGTGATGGGAAATTGGAATCTGGTTTTAGTACTTATATTTCTGTTCTTGATGGGGCGTGTAAACTTGGGGAAGTGGAAGTGGTTGAAAGGGTAATGAGGATTATGGTGGAGAAAAAATTGCTTTCGGAGAGTCCTGTATCGGAGTATGATTCAGTTATTAAGAAGCTTTGTGATTTGGAGAAAACTTATGCGGCGGAGATGTTATTTAAGAAAGCGTGTGATGAGAAAATTGAATTACAAAATGCTACTTATGGATGTATCCTGCAGGCATTGACTAAAGGTATGAGAATAGTGGAAGCTATTCGGGTGTATCGGGTGGTTTGTGAGAGGGGAATTGTAGTGGATGATAGTAGTTATTATGCATTTGCTAATGTTCTTTGCAAGGAAGAGCGATCTGAGGAGGGTTTCGACTTGTTAATGGATGTTATAAGAAGAGGGTTTAGTCCTTGTGCATTAGAATTGTCTGGATTTATATCATTTCTATGTGGCAAGCGTAGATGGAGAGAAGCCGAAAATCTGTTGAATTCAGTACTAGACAAAGAGCTACTACCGGATTTGACTTCTTGTTCCTCATTAGTACGACATTACTGCTCTACAAGACGGATTAATTCAGCTATGGCATTGCACAGTAAGATTGAAAAACTGAATGGCAGTTTGGATGTGACAACTTACAATGTACTTCTTGCTGGGCTGTTTGCAGCAAGGAGAGTCGAAGAAGCAGTGAAAGTGTTTGATTACATGAAAACTCACAACTTGGTTAGCAGTGAAAGCTTTACGATCATGATTCGCGGGCTTTGTCAAGTAAAGGAACTGAGGAAGGCCATGAAAATTCATGATGAAATGTTGAAGATGGGACTTAAGCCTCCTGCAGCCACTTACAAACGTTTGATATATGGATTCAAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009536 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

440

Amino Acids

49.48

Weight (kDa)

8.01

Isoelectric Point (pI)

42.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	44 - 93	1.1e-06	PPR repeat family
PPR_2	PF13041	321 - 368	2e-06	PPR repeat family
PPR_1	PF12854	356 - 385	2.1e-06	PPR repeat
PPR_2	PF13041	357 - 404	6.1e-12	PPR repeat family
PPR_2	PF13041	393 - 437	3.8e-09	PPR repeat family
PPR	PF01535	394 - 423	2.3e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016541)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21170
fragaria_vesca	FvH4_3g02620
malus_domestica	MD00G1180200.v1.1
prunus_persica	Prupe.4G025500_v2.0.a1
pyrus_communis	pycom05g31090
rosa_chinensis	RchiOBHm_Chr5g0003911
rosa_laevigata	RLG00000031187
rosa_multiflora	Rmu_sc0011733.1_g000003 Rmu_sc0019391.1_g000005
rosa_roxburghii	Rroxscaffold_1G00072060
rosa_rugosa	Rorug04G0407800
rosa_samantha	Rh5CG037900 Rh5DG034100
rosa_wichuraiana	Rw5G003240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	839
AccII	CGCG	1 cut(s)	1200
AciI	CCGC	3 cut(s)	602, 605, 1200
AclI	AACGTT	1 cut(s)	1294
AcsI	RAATTY	4 cut(s)	287, 376, 934, 1239
AcuI	CTGAAG	1 cut(s)	117
AfaI	GTAC	5 cut(s)	19, 442, 942, 990, 1089
AflII	CTTAAG	2 cut(s)	40, 1268
AgsI	TTSAA	7 cut(s)	293, 497, 644, 934, 1049, 1258, 1312
AjuI	GAANNNNNNNTTGG	2 cut(s)	1049, 1081
AluBI	AGCT	6 cut(s)	143, 577, 710, 955, 1025, 1182
AluI	AGCT	6 cut(s)	143, 577, 710, 955, 1025, 1182
Alw26I	GTCTC	2 cut(s)	176, 258
AoxI	GGCC	1 cut(s)	1230
ApeKI	GCWGC	3 cut(s)	386, 1109, 1280
ApoI	RAATTY	4 cut(s)	287, 376, 934, 1239
AseI	ATTAAT	1 cut(s)	1017
Asp700I	GAANNNNTTC	1 cut(s)	711
BbsI	GAAGAC	1 cut(s)	338
BbvI	GCAGC	3 cut(s)	373, 1121, 1292
BccI	CCATC	6 cut(s)	275, 350, 410, 455, 903, 1255
BcgI	CGANNNNNNTGC	2 cut(s)	981, 1015
BciVI	GTATCC	1 cut(s)	680
BclI	TGATCA	1 cut(s)	216
BcoDI	GTCTC	2 cut(s)	176, 258
BfaI	CTAG	2 cut(s)	186, 944
BfmI	CTRYAG	2 cut(s)	674, 1278
BfrI	CTTAAG	2 cut(s)	40, 1268
BfuI	GTATCC	1 cut(s)	680
BisI	GCNGC	4 cut(s)	387, 603, 1110, 1281
BlsI	GCNGC	4 cut(s)	388, 604, 1111, 1282
BmcAI	AGTACT	2 cut(s)	442, 942
BmsI	GCATC	2 cut(s)	151, 373
BpiI	GAAGAC	1 cut(s)	338
BsaBI	GATNNNNATC	1 cut(s)	883
BsaI	GGTCTC	1 cut(s)	258
BsaWI	WCCGGW	1 cut(s)	961
Bse1I	ACTGG	1 cut(s)	241
Bse3DI	GCAATG	4 cut(s)	152, 154, 171, 1031
Bse8I	GATNNNNATC	1 cut(s)	883
BseGI	GGATG	5 cut(s)	361, 671, 760, 838, 1075
BseJI	GATNNNNATC	1 cut(s)	883
BseMI	GCAATG	4 cut(s)	152, 154, 171, 1031
BseMII	CTCAG	3 cut(s)	278, 798, 1214
BseNI	ACTGG	1 cut(s)	241
BseRI	GAGGAG	1 cut(s)	824
BseXI	GCAGC	3 cut(s)	373, 1121, 1292
BseYI	CCCAGC	1 cut(s)	1097
Bsh1236I	CGCG	1 cut(s)	1200
BshFI	GGCC	1 cut(s)	1232
BsiSI	CCGG	1 cut(s)	962
BslFI	GGGAC	1 cut(s)	1278
BsmAI	GTCTC	2 cut(s)	176, 258
BsmFI	GGGAC	1 cut(s)	1278
BsnI	GGCC	1 cut(s)	1232
Bso31I	GGTCTC	1 cut(s)	258
Bsp143I	GATC	3 cut(s)	216, 803, 1188
BspACI	CCGC	3 cut(s)	602, 605, 1200
BspANI	GGCC	1 cut(s)	1232
BspCNI	CTCAG	3 cut(s)	277, 799, 1215
BspFNI	CGCG	1 cut(s)	1200
BspHI	TCATGA	2 cut(s)	1191, 1243
BspMAI	CTGCAG	2 cut(s)	678, 1282
BspQI	GCTCTTC	1 cut(s)	792
BspTI	CTTAAG	2 cut(s)	40, 1268
BspTNI	GGTCTC	1 cut(s)	258
BsrDI	GCAATG	4 cut(s)	152, 154, 171, 1031
BsrI	ACTGG	1 cut(s)	241
BssMI	GATC	3 cut(s)	216, 803, 1188
Bst4CI	ACNGT	1 cut(s)	1040
Bst6I	CTCTTC	2 cut(s)	792, 838
BstAFI	CTTAAG	2 cut(s)	40, 1268
BstC8I	GCNNGC	4 cut(s)	145, 678, 902, 1202
BstDEI	CTNAG	3 cut(s)	264, 807, 1223
BstF5I	GGATG	5 cut(s)	361, 671, 760, 838, 1075
BstFNI	CGCG	1 cut(s)	1200
BstKTI	GATC	3 cut(s)	219, 806, 1191
BstMAI	GTCTC	2 cut(s)	176, 258
BstMBI	GATC	3 cut(s)	216, 803, 1188
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 1179
BstSFI	CTRYAG	2 cut(s)	674, 1278
BstUI	CGCG	1 cut(s)	1200
BstV1I	GCAGC	3 cut(s)	373, 1121, 1292
BstV2I	GAAGAC	1 cut(s)	338
BsuI	GTATCC	1 cut(s)	680
BsuRI	GGCC	1 cut(s)	1232
BtsCI	GGATG	5 cut(s)	361, 671, 760, 838, 1075
BtsI	GCAGTG	2 cut(s)	1137, 1180
BtsIMutI	CAGTG	2 cut(s)	1137, 1180
Cac8I	GCNNGC	4 cut(s)	145, 678, 902, 1202
CciI	TCATGA	2 cut(s)	1191, 1243
Csp6I	GTAC	5 cut(s)	18, 441, 941, 989, 1088
CviAII	CATG	5 cut(s)	249, 1150, 1192, 1234, 1244
CviQI	GTAC	5 cut(s)	18, 441, 941, 989, 1088
DdeI	CTNAG	3 cut(s)	264, 807, 1223
DpnI	GATC	3 cut(s)	218, 805, 1190
DpnII	GATC	3 cut(s)	216, 803, 1188
Eam1104I	CTCTTC	2 cut(s)	792, 838
EarI	CTCTTC	2 cut(s)	792, 838
EciI	GGCGGA	1 cut(s)	620
Eco31I	GGTCTC	1 cut(s)	258
Eco57I	CTGAAG	1 cut(s)	117
EcoRI	GAATTC	1 cut(s)	934
EcoT22I	ATGCAT	2 cut(s)	154, 775
FaeI	CATG	5 cut(s)	252, 1153, 1195, 1237, 1247
FaqI	GGGAC	1 cut(s)	1278
FatI	CATG	5 cut(s)	248, 1149, 1191, 1233, 1243
FauI	CCCGC	1 cut(s)	1193
FbaI	TGATCA	1 cut(s)	216
Fnu4HI	GCNGC	4 cut(s)	387, 603, 1110, 1281
FokI	GGATG	5 cut(s)	368, 678, 767, 845, 1082
Fsp4HI	GCNGC	4 cut(s)	387, 603, 1110, 1281
FspBI	CTAG	2 cut(s)	186, 944
GluI	GCNGC	4 cut(s)	387, 603, 1110, 1281
GsaI	CCCAGC	1 cut(s)	1101
HaeIII	GGCC	1 cut(s)	1232
HapII	CCGG	1 cut(s)	962
Hin1II	CATG	5 cut(s)	252, 1153, 1195, 1237, 1247
HindIII	AAGCTT	2 cut(s)	575, 1180
HinfI	GANTC	7 cut(s)	23, 428, 541, 560, 1119, 1195, 1308
HpaII	CCGG	1 cut(s)	962
Hpy166II	GTNNAC	2 cut(s)	246, 473
Hpy188I	TCNGA	4 cut(s)	221, 538, 553, 808
Hpy188III	TCNNGA	4 cut(s)	458, 876, 1192, 1244
Hpy8I	GTNNAC	2 cut(s)	246, 473
HpyAV	CCTTC	3 cut(s)	80, 141, 1222
HpyCH4III	ACNGT	1 cut(s)	1040
HpyCH4IV	ACGT	1 cut(s)	1294
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 1179
HpyF3I	CTNAG	3 cut(s)	264, 807, 1223
HpySE526I	ACGT	1 cut(s)	1294
Hsp92II	CATG	5 cut(s)	252, 1153, 1195, 1237, 1247
Ksp22I	TGATCA	1 cut(s)	216
Kzo9I	GATC	3 cut(s)	216, 803, 1188
LguI	GCTCTTC	1 cut(s)	792
Lsp1109I	GCAGC	3 cut(s)	373, 1121, 1292
LweI	GCATC	2 cut(s)	151, 373
MaeI	CTAG	2 cut(s)	186, 944
MaeII	ACGT	1 cut(s)	1294
MaeIII	GTNAC	2 cut(s)	10, 1072
MalI	GATC	3 cut(s)	218, 805, 1190
MboI	GATC	3 cut(s)	216, 803, 1188
MboII	GAAGA	5 cut(s)	338, 809, 855, 1136, 1270
MlyI	GAGTC	2 cut(s)	550, 1128
Mph1103I	ATGCAT	2 cut(s)	154, 775
MroXI	GAANNNNTTC	1 cut(s)	711
MseI	TTAA	7 cut(s)	41, 81, 570, 618, 827, 1017, 1269
MslI	CAYNNNNRTG	1 cut(s)	892
MspCI	CTTAAG	2 cut(s)	40, 1268
MspI	CCGG	1 cut(s)	962
MvnI	CGCG	1 cut(s)	1200
MwoI	GCNNNNNNNGC	2 cut(s)	149, 1179
NdeII	GATC	3 cut(s)	216, 803, 1188
NlaIII	CATG	5 cut(s)	252, 1153, 1195, 1237, 1247
NmuCI	GTSAC	1 cut(s)	1072
NsiI	ATGCAT	2 cut(s)	154, 775
PagI	TCATGA	2 cut(s)	1191, 1243
PciSI	GCTCTTC	1 cut(s)	792
PdmI	GAANNNNTTC	1 cut(s)	711
PfeI	GAWTC	5 cut(s)	23, 428, 560, 1195, 1308
PkrI	GCNGC	4 cut(s)	388, 604, 1111, 1282
PleI	GAGTC	2 cut(s)	549, 1127
PpsI	GAGTC	2 cut(s)	549, 1127
PshBI	ATTAAT	1 cut(s)	1017
PsiI	TTATAA	1 cut(s)	839
Psp1406I	AACGTT	1 cut(s)	1294
PspFI	CCCAGC	1 cut(s)	1097
PstI	CTGCAG	2 cut(s)	678, 1282
RsaI	GTAC	5 cut(s)	19, 442, 942, 990, 1089
RsaNI	GTAC	5 cut(s)	18, 441, 941, 989, 1088
RseI	CAYNNNNRTG	1 cut(s)	892
SapI	GCTCTTC	1 cut(s)	792
SaqAI	TTAA	7 cut(s)	41, 81, 570, 618, 827, 1017, 1269
SatI	GCNGC	4 cut(s)	387, 603, 1110, 1281
Sau3AI	GATC	3 cut(s)	216, 803, 1188
SbfI	CCTGCAGG	1 cut(s)	678
ScaI	AGTACT	2 cut(s)	442, 942
SchI	GAGTC	2 cut(s)	550, 1128
SdaI	CCTGCAGG	1 cut(s)	678
SfaNI	GCATC	2 cut(s)	151, 373
SfcI	CTRYAG	2 cut(s)	674, 1278
SmiMI	CAYNNNNRTG	1 cut(s)	892
SmlI	CTYRAG	2 cut(s)	40, 1268
SmoI	CTYRAG	2 cut(s)	40, 1268
Sse8387I	CCTGCAGG	1 cut(s)	678
SsiI	CCGC	3 cut(s)	602, 605, 1200
SspMI	CTAG	2 cut(s)	186, 944
TaaI	ACNGT	1 cut(s)	1040
TaiI	ACGT	1 cut(s)	1297
TaqI	TCGA	2 cut(s)	819, 1122
TatI	WGTACW	3 cut(s)	440, 940, 1087
TauI	GCSGC	1 cut(s)	605
TfiI	GAWTC	5 cut(s)	23, 428, 560, 1195, 1308
Tru1I	TTAA	7 cut(s)	41, 81, 570, 618, 827, 1017, 1269
Tru9I	TTAA	7 cut(s)	41, 81, 570, 618, 827, 1017, 1269
TscAI	CASTG	2 cut(s)	1137, 1180
TseFI	GTSAC	1 cut(s)	1072
TseI	GCWGC	3 cut(s)	386, 1109, 1280
Tsp45I	GTSAC	1 cut(s)	1072
TspDTI	ATGAA	4 cut(s)	1166, 1232, 1250, 1263
TspGWI	ACGGA	1 cut(s)	1027
TspRI	CASTG	2 cut(s)	1137, 1180
Vha464I	CTTAAG	2 cut(s)	40, 1268
VspI	ATTAAT	1 cut(s)	1017
XapI	RAATTY	4 cut(s)	287, 376, 934, 1239
XmnI	GAANNNNTTC	1 cut(s)	711
XspI	CTAG	2 cut(s)	186, 944
ZrmI	AGTACT	2 cut(s)	442, 942
Zsp2I	ATGCAT	2 cut(s)	154, 775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.