Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004788

Physical Location & Seq

Genomic Coordinates Reverse (-)

11310348 .. 11313850

Gene Structure 3503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G21215.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGAAAACGGTGGAACAATTCCGGGTCAAGAAATCGGATCAGGGCTTCAAAAACCCGTTAACCCAGATGGGTTTGTGACGATCGATGTTGAAAGTTTCTCTAATGTCATCCACAAAGACTTCTCTTCTTCTAGTCCAAGAATTACTAGGAATGTATCGAGGAAAGGGTCTCCAAGAAGCAACAACGAGAGAAAACTCCATTTTGACGCAAATGGTAATGACAAGGAGATCTCATTTCCTCAGTCCCCACTTAGAGGGTCAAGCACGCCGGAAAAGGCTAGCACCGTGGGCCCCACAGAACATGCAGGCACGGCCACAACCGCTGCCACAGCTGTTTCAGCCTCGCCGCTTCATCAGATCACCGTTACTACGGCTGCCACGGCCGCAGGAAATATGATTACCGACCAAAATAGAGAAAGAAGGTTCGGTTTTTCGAGGAAATCGAGTTTTAAACGCTCTCACACTTCTTGGATGCTTGATCCGAAGAAAATCGTCCTCTTCTTTGCAACTTTGTCAAGCATGGGATCAATCTTGTTAATCATATTCACACTCTCGATCAGCAAGTCCAATCCCGGAGATATGCCTCTAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

197

Amino Acids

21.17

Weight (kDa)

9.75

Isoelectric Point (pI)

45.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21215 AT4G21215
fragaria_vesca	FvH4_3g02690 FvH4_3g02690 FvH4_3g02690
malus_domestica	MD05G1340800.v1.1 MD10G1314300.v1.1
prunus_persica	Prupe.4G026600_v2.0.a1 Prupe.4G026600_v2.0.a1 Prupe.4G026600_v2.0.a1 Prupe.4G026600_v2.0.a1 Prupe.4G026600_v2.0.a1 Prupe.4G026600_v2.0.a1
pyrus_communis	pycom05g31000 pycom10g26640
rosa_chinensis	RchiOBHm_Chr5g0004031
rosa_laevigata	RLG00000031197
rosa_roxburghii	Rroxscaffold_1G00071680 Rroxscaffold_1G00071950
rosa_rugosa	Rorug04G0409100 Rorug04G0409200 Rorug04G0409200 Rorug04G0409300 Rorug04G0409400 Rorug04G0409400 Rorug04G0409400
rosa_samantha	Rh5AG036800 Rh5BG035900 Rh5CG039500 Rh5DG035400
rosa_wichuraiana	Rw5G003340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	321, 347, 384
AclWI	GGATC	3 cut(s)	46, 473, 532
AcoI	YGGCCR	2 cut(s)	312, 381
AfiI	CCNNNNNNNGG	1 cut(s)	254
AgsI	TTSAA	2 cut(s)	50, 92
AluBI	AGCT	1 cut(s)	332
AluI	AGCT	1 cut(s)	332
Alw26I	GTCTC	1 cut(s)	174
AlwI	GGATC	3 cut(s)	46, 473, 532
AoxI	GGCC	3 cut(s)	289, 312, 381
ApaI	GGGCCC	1 cut(s)	293
ApeKI	GCWGC	2 cut(s)	323, 374
AspS9I	GGNCC	2 cut(s)	289, 290
AsuC2I	CCSGG	2 cut(s)	24, 573
AsuHPI	GGTGA	1 cut(s)	352
AsuNHI	GCTAGC	1 cut(s)	278
BaeGI	GKGCMC	1 cut(s)	293
BanII	GRGCYC	1 cut(s)	293
BbvI	GCAGC	2 cut(s)	310, 361
BccI	CCATC	1 cut(s)	62
BceAI	ACGGC	3 cut(s)	327, 387, 396
BcnI	CCSGG	2 cut(s)	24, 573
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	4 cut(s)	132, 147, 279, 587
BglII	AGATCT	1 cut(s)	228
BisI	GCNGC	4 cut(s)	324, 347, 375, 384
BlsI	GCNGC	4 cut(s)	325, 348, 376, 385
Bme1390I	CCNGG	2 cut(s)	24, 573
BmgT120I	GGNCC	2 cut(s)	289, 290
BmiI	GGNNCC	2 cut(s)	291, 292
BmrFI	CCNGG	2 cut(s)	24, 573
BmsI	GCATC	1 cut(s)	462
BmtI	GCTAGC	1 cut(s)	282
BpuMI	CCSGG	2 cut(s)	24, 573
Bsa29I	ATCGAT	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	174
BsaJI	CCNNGG	2 cut(s)	285, 378
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
BseCI	ATCGAT	1 cut(s)	84
BseDI	CCNNGG	2 cut(s)	285, 378
BseGI	GGATG	2 cut(s)	108, 477
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMII	CTCAG	1 cut(s)	254
BseSI	GKGCMC	1 cut(s)	293
BseX3I	CGGCCG	1 cut(s)	381
BseXI	GCAGC	2 cut(s)	310, 361
Bsh1285I	CGRYCG	2 cut(s)	84, 384
BshFI	GGCC	3 cut(s)	291, 314, 383
BshVI	ATCGAT	1 cut(s)	84
BsiEI	CGRYCG	2 cut(s)	84, 384
BsiSI	CCGG	3 cut(s)	23, 269, 573
BslFI	GGGAC	1 cut(s)	229
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmAI	GTCTC	1 cut(s)	174
BsmFI	GGGAC	1 cut(s)	229
BsnI	GGCC	3 cut(s)	291, 314, 383
Bso31I	GGTCTC	1 cut(s)	174
Bsp120I	GGGCCC	1 cut(s)	289
Bsp1286I	GDGCHC	1 cut(s)	293
Bsp143I	GATC	7 cut(s)	38, 81, 228, 357, 478, 524, 555
BspACI	CCGC	3 cut(s)	321, 347, 384
BspANI	GGCC	3 cut(s)	291, 314, 383
BspCNI	CTCAG	1 cut(s)	253
BspDI	ATCGAT	1 cut(s)	84
BspLI	GGNNCC	2 cut(s)	291, 292
BspOI	GCTAGC	1 cut(s)	282
BspPI	GGATC	3 cut(s)	46, 473, 532
BspTNI	GGTCTC	1 cut(s)	174
BssECI	CCNNGG	2 cut(s)	285, 378
BssMI	GATC	7 cut(s)	38, 81, 228, 357, 478, 524, 555
Bst4CI	ACNGT	3 cut(s)	11, 286, 364
Bst6I	CTCTTC	2 cut(s)	130, 503
BstC8I	GCNNGC	3 cut(s)	266, 280, 307
BstDEI	CTNAG	2 cut(s)	240, 251
BstDSI	CCRYGG	2 cut(s)	285, 378
BstF5I	GGATG	2 cut(s)	108, 477
BstKTI	GATC	7 cut(s)	41, 84, 231, 360, 481, 527, 558
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	7 cut(s)	38, 81, 228, 357, 478, 524, 555
BstMCI	CGRYCG	2 cut(s)	84, 384
BstMWI	GCNNNNNNNGC	7 cut(s)	288, 311, 320, 329, 338, 380, 383
BstNSI	RCATGY	1 cut(s)	305
BstSCI	CCNGG	2 cut(s)	22, 571
BstSLI	GKGCMC	1 cut(s)	293
BstV1I	GCAGC	2 cut(s)	310, 361
BstX2I	RGATCY	1 cut(s)	228
BstYI	RGATCY	1 cut(s)	228
BstZI	CGGCCG	1 cut(s)	381
Bsu15I	ATCGAT	1 cut(s)	84
BsuRI	GGCC	3 cut(s)	291, 314, 383
BsuTUI	ATCGAT	1 cut(s)	84
BtgI	CCRYGG	2 cut(s)	285, 378
BtsCI	GGATG	2 cut(s)	108, 477
Cac8I	GCNNGC	3 cut(s)	266, 280, 307
Cfr13I	GGNCC	2 cut(s)	289, 290
ClaI	ATCGAT	1 cut(s)	84
CseI	GACGC	1 cut(s)	215
CviAII	CATG	2 cut(s)	302, 520
CviJI	RGCY	8 cut(s)	46, 278, 291, 314, 332, 341, 374, 383
CviKI_1	RGCY	8 cut(s)	46, 278, 291, 314, 332, 341, 374, 383
DdeI	CTNAG	2 cut(s)	240, 251
DpnI	GATC	7 cut(s)	40, 83, 230, 359, 480, 526, 557
DpnII	GATC	7 cut(s)	38, 81, 228, 357, 478, 524, 555
DraI	TTTAAA	1 cut(s)	451
EaeI	YGGCCR	2 cut(s)	312, 381
EagI	CGGCCG	1 cut(s)	381
Eam1104I	CTCTTC	2 cut(s)	130, 503
EarI	CTCTTC	2 cut(s)	130, 503
EclXI	CGGCCG	1 cut(s)	381
Eco24I	GRGCYC	1 cut(s)	293
Eco31I	GGTCTC	1 cut(s)	174
Eco52I	CGGCCG	1 cut(s)	381
EcoO109I	RGGNCCY	1 cut(s)	290
EcoT38I	GRGCYC	1 cut(s)	293
FaeI	CATG	2 cut(s)	305, 523
FaiI	YATR	5 cut(s)	303, 395, 521, 542, 581
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	2 cut(s)	301, 519
Fnu4HI	GCNGC	4 cut(s)	324, 347, 375, 384
FokI	GGATG	2 cut(s)	95, 484
FriOI	GRGCYC	1 cut(s)	293
Fsp4HI	GCNGC	4 cut(s)	324, 347, 375, 384
FspBI	CTAG	4 cut(s)	132, 147, 279, 587
GluI	GCNGC	4 cut(s)	324, 347, 375, 384
HaeIII	GGCC	3 cut(s)	291, 314, 383
HapII	CCGG	3 cut(s)	23, 269, 573
HgaI	GACGC	1 cut(s)	215
Hin1II	CATG	2 cut(s)	305, 523
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HpaI	GTTAAC	1 cut(s)	61
HpaII	CCGG	3 cut(s)	23, 269, 573
HphI	GGTGA	1 cut(s)	352
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	3 cut(s)	38, 357, 483
Hpy188III	TCNNGA	3 cut(s)	29, 553, 587
Hpy8I	GTNNAC	1 cut(s)	61
HpyAV	CCTTC	1 cut(s)	414
HpyCH4III	ACNGT	3 cut(s)	11, 286, 364
HpyCH4V	TGCA	2 cut(s)	305, 506
HpyF10VI	GCNNNNNNNGC	7 cut(s)	288, 311, 320, 329, 338, 380, 383
HpyF3I	CTNAG	2 cut(s)	240, 251
Hsp92II	CATG	2 cut(s)	305, 523
KspAI	GTTAAC	1 cut(s)	61
Kzo9I	GATC	7 cut(s)	38, 81, 228, 357, 478, 524, 555
LpnPI	CCDG	7 cut(s)	27, 36, 78, 282, 291, 372, 586
Lsp1109I	GCAGC	2 cut(s)	310, 361
LweI	GCATC	1 cut(s)	462
MaeI	CTAG	4 cut(s)	132, 147, 279, 587
MaeIII	GTNAC	2 cut(s)	76, 364
MalI	GATC	7 cut(s)	40, 83, 230, 359, 480, 526, 557
MboI	GATC	7 cut(s)	38, 81, 228, 357, 478, 524, 555
MboII	GAAGA	4 cut(s)	117, 120, 490, 496
MflI	RGATCY	1 cut(s)	228
MhlI	GDGCHC	1 cut(s)	293
MluCI	AATT	2 cut(s)	18, 141
MnlI	CCTC	7 cut(s)	153, 248, 249, 352, 429, 506, 594
MseI	TTAA	3 cut(s)	60, 450, 536
MspA1I	CMGCKG	2 cut(s)	323, 332
MspI	CCGG	3 cut(s)	23, 269, 573
MspR9I	CCNGG	2 cut(s)	24, 573
MwoI	GCNNNNNNNGC	7 cut(s)	288, 311, 320, 329, 338, 380, 383
NciI	CCSGG	2 cut(s)	24, 573
NdeII	GATC	7 cut(s)	38, 81, 228, 357, 478, 524, 555
NheI	GCTAGC	1 cut(s)	278
NlaIII	CATG	2 cut(s)	305, 523
NlaIV	GGNNCC	2 cut(s)	291, 292
NmuCI	GTSAC	1 cut(s)	76
NspI	RCATGY	1 cut(s)	305
PcsI	WCGNNNNNNNCGW	1 cut(s)	440
PfoI	TCCNGGA	1 cut(s)	571
PkrI	GCNGC	4 cut(s)	325, 348, 376, 385
Ple19I	CGATCG	1 cut(s)	84
PspN4I	GGNNCC	2 cut(s)	291, 292
PspOMI	GGGCCC	1 cut(s)	289
PspPI	GGNCC	2 cut(s)	289, 290
PsuI	RGATCY	1 cut(s)	228
PvuI	CGATCG	1 cut(s)	84
PvuII	CAGCTG	1 cut(s)	332
SaqAI	TTAA	3 cut(s)	60, 450, 536
SatI	GCNGC	4 cut(s)	324, 347, 375, 384
Sau3AI	GATC	7 cut(s)	38, 81, 228, 357, 478, 524, 555
Sau96I	GGNCC	2 cut(s)	289, 290
ScrFI	CCNGG	2 cut(s)	24, 573
SduI	GDGCHC	1 cut(s)	293
SetI	ASST	2 cut(s)	334, 425
SfaNI	GCATC	1 cut(s)	462
Sse9I	AATT	2 cut(s)	18, 141
SsiI	CCGC	3 cut(s)	321, 347, 384
SspMI	CTAG	4 cut(s)	132, 147, 279, 587
StyD4I	CCNGG	2 cut(s)	22, 571
TaaI	ACNGT	3 cut(s)	11, 286, 364
TaqI	TCGA	5 cut(s)	84, 158, 434, 443, 554
TasI	AATT	2 cut(s)	18, 141
TauI	GCSGC	2 cut(s)	349, 386
Tru1I	TTAA	3 cut(s)	60, 450, 536
Tru9I	TTAA	3 cut(s)	60, 450, 536
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	2 cut(s)	323, 374
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	1 cut(s)	341
XbaI	TCTAGA	1 cut(s)	586
XceI	RCATGY	1 cut(s)	305
XspI	CTAG	4 cut(s)	132, 147, 279, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.