FvH4_3g02690

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004788
Physical Location & Seq
Reverse (-)
1368552 .. 1371552
3001 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g02690.t3

Sequence Viewer

Length: 642 bp
ATGAGAGAACAAGAAGAGAAACTTGTCACAATACCAGAAATGGCGGAAACTCCCAAGTTGGATTTGGGTTCCATTGATGAGGTTTATGGATTAGAAGAGAAAATGGGCACCCAGAAAATCTCGGTTTCGGATCATATAAATGGATTTCACTACACAGCCGATAAATCTGATAGCTTTGTGATTGACATGGAGAGTTTCAACCATGCCATCACAGATAAAGATGTAACTGCAAATTCTAGAACCTCGAGAAATCTTTCACGGAAAGGGTCTCAGAGAGTTGGAGAGAAGAAGATAAGCACTAATGGAAATTCAAATGATAGAGATGTTTCAGCTTCAGCTGTAACTTCACCTACAGGGCCTCTTACCCCCAAAAAGCCGACGGTGGTTGCAGGGACCGCAGATCACCCGGGCAGCCCGCAAGTCCACCATCAGATAACCGTCACAGCGGCCAACATTGGCACCACCGCCGATGGCAGATGCGTTGTTAGGAGAAATAGTTTCCGGCGTTCTTCATCGTGGGCCGTTGATCCCAAGAGGGTTCTCTTCTTCTTTGCTACATTGTCAAGCATTGGTACAATCTTACTGATATATTTCACACTTGCAATTGGCAAGTACAATCTAGAGGAAAATAGTCTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

23.3

Weight (kDa)

6.6

Isoelectric Point (pI)

33.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 107, 458
AciI CCGC 5 cut(s) 44, 396, 416, 446, 465
AclWI GGATC 2 cut(s) 138, 521
AcoI YGGCCR 1 cut(s) 447
AcsI RAATTY 2 cut(s) 232, 307
AcuI CTGAAG 1 cut(s) 318
AfaI GTAC 2 cut(s) 574, 614
AgsI TTSAA 2 cut(s) 199, 312
AluBI AGCT 3 cut(s) 174, 332, 338
AluI AGCT 3 cut(s) 174, 332, 338
Alw26I GTCTC 1 cut(s) 273
AlwI GGATC 2 cut(s) 138, 521
Ama87I CYCGRG 2 cut(s) 244, 406
AoxI GGCC 3 cut(s) 356, 447, 519
ApeKI GCWGC 1 cut(s) 411
ApoI RAATTY 2 cut(s) 232, 307
Asp700I GAANNNNTTC 1 cut(s) 253
AspS9I GGNCC 3 cut(s) 356, 393, 519
AsuC2I CCSGG 2 cut(s) 407, 408
AsuHPI GGTGA 2 cut(s) 339, 395
AvaI CYCGRG 2 cut(s) 244, 406
AvaII GGWCC 1 cut(s) 393
BaeGI GKGCMC 1 cut(s) 110
BanI GGYRCC 2 cut(s) 107, 458
BbvI GCAGC 1 cut(s) 423
BccI CCATC 3 cut(s) 215, 435, 464
BceAI ACGGC 1 cut(s) 506
BcnI CCSGG 2 cut(s) 407, 408
BcoDI GTCTC 1 cut(s) 273
BfaI CTAG 2 cut(s) 237, 620
BfmI CTRYAG 1 cut(s) 351
BisI GCNGC 2 cut(s) 412, 447
BlsI GCNGC 2 cut(s) 413, 448
Bme1390I CCNGG 2 cut(s) 407, 408
Bme18I GGWCC 1 cut(s) 393
BmeT110I CYCGRG 2 cut(s) 244, 406
BmgT120I GGNCC 3 cut(s) 356, 393, 519
BmiI GGNNCC 4 cut(s) 70, 109, 394, 460
BmrFI CCNGG 2 cut(s) 407, 408
BmsI GCATC 1 cut(s) 467
BpuMI CCSGG 2 cut(s) 407, 408
BsaI GGTCTC 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 406
BsaXI ACNNNNNCTCC 2 cut(s) 481, 511
BseDI CCNNGG 1 cut(s) 406
BseMII CTCAG 1 cut(s) 284
BseSI GKGCMC 1 cut(s) 110
BseXI GCAGC 1 cut(s) 423
BshFI GGCC 3 cut(s) 358, 449, 521
BshNI GGYRCC 2 cut(s) 107, 458
BsiHKCI CYCGRG 2 cut(s) 244, 406
BsiSI CCGG 2 cut(s) 407, 502
BslFI GGGAC 1 cut(s) 406
BsmAI GTCTC 1 cut(s) 273
BsmFI GGGAC 1 cut(s) 406
BsnI GGCC 3 cut(s) 358, 449, 521
Bso31I GGTCTC 1 cut(s) 273
BsoBI CYCGRG 2 cut(s) 244, 406
Bsp1286I GDGCHC 1 cut(s) 110
Bsp143I GATC 3 cut(s) 130, 400, 526
BspACI CCGC 5 cut(s) 44, 396, 416, 446, 465
BspANI GGCC 3 cut(s) 358, 449, 521
BspCNI CTCAG 1 cut(s) 283
BspLI GGNNCC 4 cut(s) 70, 109, 394, 460
BspPI GGATC 2 cut(s) 138, 521
BspT107I GGYRCC 2 cut(s) 107, 458
BspTNI GGTCTC 1 cut(s) 273
BssECI CCNNGG 1 cut(s) 406
BssMI GATC 3 cut(s) 130, 400, 526
Bst4CI ACNGT 2 cut(s) 382, 439
Bst6I CTCTTC 3 cut(s) 9, 90, 548
BstC8I GCNNGC 1 cut(s) 416
BstDEI CTNAG 1 cut(s) 270
BstKTI GATC 3 cut(s) 133, 403, 529
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 3 cut(s) 130, 400, 526
BstMWI GCNNNNNNNGC 1 cut(s) 395
BstSCI CCNGG 2 cut(s) 405, 406
BstSFI CTRYAG 1 cut(s) 351
BstSLI GKGCMC 1 cut(s) 110
BstV1I GCAGC 1 cut(s) 423
BsuRI GGCC 3 cut(s) 358, 449, 521
Cac8I GCNNGC 1 cut(s) 416
Cfr13I GGNCC 3 cut(s) 356, 393, 519
Cfr9I CCCGGG 1 cut(s) 406
Csp6I GTAC 2 cut(s) 573, 613
CviAII CATG 2 cut(s) 187, 203
CviJI RGCY 9 cut(s) 158, 174, 332, 338, 358, 376, 414, 449, 521
CviKI_1 RGCY 9 cut(s) 158, 174, 332, 338, 358, 376, 414, 449, 521
CviQI GTAC 2 cut(s) 573, 613
DdeI CTNAG 1 cut(s) 270
DpnI GATC 3 cut(s) 132, 402, 528
DpnII GATC 3 cut(s) 130, 400, 526
EaeI YGGCCR 1 cut(s) 447
Eam1104I CTCTTC 3 cut(s) 9, 90, 548
EarI CTCTTC 3 cut(s) 9, 90, 548
EciI GGCGGA 1 cut(s) 59
Eco31I GGTCTC 1 cut(s) 273
Eco47I GGWCC 1 cut(s) 393
Eco57I CTGAAG 1 cut(s) 318
Eco88I CYCGRG 2 cut(s) 244, 406
EcoO109I RGGNCCY 1 cut(s) 356
FaeI CATG 2 cut(s) 190, 206
FaiI YATR 6 cut(s) 87, 135, 137, 188, 204, 589
FalI AAGNNNNNCTT 1 cut(s) 38
FaqI GGGAC 1 cut(s) 406
FatI CATG 2 cut(s) 186, 202
FauI CCCGC 1 cut(s) 423
Fnu4HI GCNGC 2 cut(s) 412, 447
Fsp4HI GCNGC 2 cut(s) 412, 447
FspBI CTAG 2 cut(s) 237, 620
GluI GCNGC 2 cut(s) 412, 447
HaeIII GGCC 3 cut(s) 358, 449, 521
HapII CCGG 2 cut(s) 407, 502
Hin1II CATG 2 cut(s) 190, 206
HpaII CCGG 2 cut(s) 407, 502
HphI GGTGA 2 cut(s) 339, 395
Hpy166II GTNNAC 1 cut(s) 424
Hpy188I TCNGA 4 cut(s) 130, 169, 273, 432
Hpy188III TCNNGA 4 cut(s) 237, 246, 620, 635
Hpy8I GTNNAC 1 cut(s) 424
Hpy99I CGWCG 1 cut(s) 382
HpyCH4III ACNGT 2 cut(s) 382, 439
HpyCH4V TGCA 3 cut(s) 230, 389, 602
HpyF10VI GCNNNNNNNGC 1 cut(s) 395
HpyF3I CTNAG 1 cut(s) 270
Hsp92II CATG 2 cut(s) 190, 206
Kzo9I GATC 3 cut(s) 130, 400, 526
LpnPI CCDG 6 cut(s) 48, 125, 339, 375, 420, 515
Lsp1109I GCAGC 1 cut(s) 423
LweI GCATC 1 cut(s) 467
MaeI CTAG 2 cut(s) 237, 620
MaeIII GTNAC 4 cut(s) 25, 223, 340, 439
MalI GATC 3 cut(s) 132, 402, 528
MboI GATC 3 cut(s) 130, 400, 526
MboII GAAGA 7 cut(s) 26, 107, 298, 301, 501, 535, 538
MfeI CAATTG 1 cut(s) 603
MhlI GDGCHC 1 cut(s) 110
MluCI AATT 3 cut(s) 232, 307, 603
MmeI TCCRAC 2 cut(s) 39, 259
MnlI CCTC 5 cut(s) 73, 253, 369, 528, 616
MroXI GAANNNNTTC 1 cut(s) 253
MslI CAYNNNNRTG 1 cut(s) 138
MspA1I CMGCKG 2 cut(s) 338, 446
MspI CCGG 2 cut(s) 407, 502
MspR9I CCNGG 2 cut(s) 407, 408
MunI CAATTG 1 cut(s) 603
MwoI GCNNNNNNNGC 1 cut(s) 395
NciI CCSGG 2 cut(s) 407, 408
NdeII GATC 3 cut(s) 130, 400, 526
NlaIII CATG 2 cut(s) 190, 206
NlaIV GGNNCC 4 cut(s) 70, 109, 394, 460
NmuCI GTSAC 2 cut(s) 25, 439
PaeR7I CTCGAG 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 253
PkrI GCNGC 2 cut(s) 413, 448
PspN4I GGNNCC 4 cut(s) 70, 109, 394, 460
PspPI GGNCC 3 cut(s) 356, 393, 519
PvuII CAGCTG 1 cut(s) 338
RsaI GTAC 2 cut(s) 574, 614
RsaNI GTAC 2 cut(s) 573, 613
RseI CAYNNNNRTG 1 cut(s) 138
SatI GCNGC 2 cut(s) 412, 447
Sau3AI GATC 3 cut(s) 130, 400, 526
Sau96I GGNCC 3 cut(s) 356, 393, 519
ScrFI CCNGG 2 cut(s) 407, 408
SduI GDGCHC 1 cut(s) 110
SetI ASST 6 cut(s) 84, 176, 245, 334, 340, 352
SfaNI GCATC 1 cut(s) 467
SfcI CTRYAG 1 cut(s) 351
Sfr274I CTCGAG 1 cut(s) 244
SinI GGWCC 1 cut(s) 393
SlaI CTCGAG 1 cut(s) 244
SmaI CCCGGG 1 cut(s) 408
SmiMI CAYNNNNRTG 1 cut(s) 138
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
Sse9I AATT 3 cut(s) 232, 307, 603
SsiI CCGC 5 cut(s) 44, 396, 416, 446, 465
SspMI CTAG 2 cut(s) 237, 620
StyD4I CCNGG 2 cut(s) 405, 406
TaaI ACNGT 2 cut(s) 382, 439
TaqI TCGA 1 cut(s) 245
TasI AATT 3 cut(s) 232, 307, 603
TatI WGTACW 1 cut(s) 612
TauI GCSGC 1 cut(s) 449
TseFI GTSAC 2 cut(s) 25, 439
TseI GCWGC 1 cut(s) 411
Tsp45I GTSAC 2 cut(s) 25, 439
TspDTI ATGAA 1 cut(s) 501
TspGWI ACGGA 1 cut(s) 274
TspMI CCCGGG 1 cut(s) 406
VpaK11BI GGWCC 1 cut(s) 393
XapI RAATTY 2 cut(s) 232, 307
XbaI TCTAGA 2 cut(s) 236, 619
XcmI CCANNNNNNNNNTGG 1 cut(s) 61
XhoI CTCGAG 1 cut(s) 244
XmaI CCCGGG 1 cut(s) 406
XmnI GAANNNNTTC 1 cut(s) 253
XspI CTAG 2 cut(s) 237, 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.