RLG00000031197

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004788
Physical Location & Seq
Reverse (-)
2896508 .. 2898487
1980 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031197

Sequence Viewer

Length: 606 bp
ATGGCGGAAATTCCCAAGTTGGATTTGGCTTCCATTGATGAGGTTTATGGATTAGAAGAGAAAATGGGCACCCAGAAAATCTCAGTTTCGGATCATATAAATGGATTTCACTACACAGCTGATAAATCTGATAGCTTTGTGATTGACATGGAGAGTTTCAGCCATGGCATCACAGATAAAGATGTAACTGCAAATTCTAGAATCTCGAGAAATCTTTCAAGGAAATGGTCACAGAGAGTTGGAGAGAAGAAGATAAGCACTAATGGAAATTCAAATGATAGAGATGTTTCAGGTTCAGCTATAACTTCACCCAAAGGTCCTATTACGCCCGAAAAGCCAGCGGTGGTTGCAGGGACCGCAGATCACCCAGGCAGCCCACAAGTCCACCATCAGATTACCGTCACAGCAGCCAACATTGGCACCACCACCGATGGCAGATGCGTTGCTAGGAGAAATAGTTTCCGGCGTTCTTCATCGTGGGCCGTTGATCCCAAGAGGGTTCTCTTCTTCTTTGCAACATTGTCAAGCATTGGTACAATCTTATTGATATACTTCACACTTACAATTGGCAAGTACAATATAGAGGAAAATAGTCTTGATTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

22.06

Weight (kDa)

7.02

Isoelectric Point (pI)

39.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 68, 419
AciI CCGC 3 cut(s) 5, 341, 357
AclWI GGATC 2 cut(s) 99, 482
AcsI RAATTY 3 cut(s) 9, 193, 268
AfaI GTAC 2 cut(s) 535, 575
AgsI TTSAA 2 cut(s) 219, 273
AjnI CCWGG 1 cut(s) 367
AluBI AGCT 3 cut(s) 119, 135, 299
AluI AGCT 3 cut(s) 119, 135, 299
AlwI GGATC 2 cut(s) 99, 482
Ama87I CYCGRG 1 cut(s) 205
AoxI GGCC 1 cut(s) 480
ApeKI GCWGC 2 cut(s) 372, 407
ApoI RAATTY 3 cut(s) 9, 193, 268
Asp700I GAANNNNTTC 1 cut(s) 214
AspS9I GGNCC 3 cut(s) 317, 354, 480
AsuHPI GGTGA 2 cut(s) 300, 356
AvaI CYCGRG 1 cut(s) 205
AvaII GGWCC 2 cut(s) 317, 354
BaeGI GKGCMC 1 cut(s) 71
BanI GGYRCC 2 cut(s) 68, 419
BbvI GCAGC 2 cut(s) 384, 419
BccI CCATC 2 cut(s) 396, 425
BceAI ACGGC 1 cut(s) 467
BciT130I CCWGG 1 cut(s) 369
BfaI CTAG 2 cut(s) 198, 447
BisI GCNGC 2 cut(s) 373, 408
BlsI GCNGC 2 cut(s) 374, 409
Bme1390I CCNGG 1 cut(s) 369
Bme18I GGWCC 2 cut(s) 317, 354
BmeT110I CYCGRG 1 cut(s) 205
BmgT120I GGNCC 3 cut(s) 317, 354, 480
BmiI GGNNCC 3 cut(s) 70, 355, 421
BmrFI CCNGG 1 cut(s) 369
BmsI GCATC 2 cut(s) 177, 428
BsaJI CCNNGG 2 cut(s) 163, 367
BsaXI ACNNNNNCTCC 2 cut(s) 442, 472
BseBI CCWGG 1 cut(s) 369
BseDI CCNNGG 2 cut(s) 163, 367
BseMII CTCAG 1 cut(s) 96
BseSI GKGCMC 1 cut(s) 71
BseXI GCAGC 2 cut(s) 384, 419
BshFI GGCC 1 cut(s) 482
BshNI GGYRCC 2 cut(s) 68, 419
BsiHKCI CYCGRG 1 cut(s) 205
BsiSI CCGG 1 cut(s) 463
BslFI GGGAC 1 cut(s) 367
BsmFI GGGAC 1 cut(s) 367
BsnI GGCC 1 cut(s) 482
BsoBI CYCGRG 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 71
Bsp143I GATC 3 cut(s) 91, 361, 487
Bsp19I CCATGG 1 cut(s) 163
BspACI CCGC 3 cut(s) 5, 341, 357
BspANI GGCC 1 cut(s) 482
BspCNI CTCAG 1 cut(s) 95
BspLI GGNNCC 3 cut(s) 70, 355, 421
BspPI GGATC 2 cut(s) 99, 482
BspT107I GGYRCC 2 cut(s) 68, 419
BssECI CCNNGG 2 cut(s) 163, 367
BssMI GATC 3 cut(s) 91, 361, 487
BssT1I CCWWGG 1 cut(s) 163
Bst2UI CCWGG 1 cut(s) 369
Bst4CI ACNGT 1 cut(s) 400
Bst6I CTCTTC 2 cut(s) 51, 509
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 1 cut(s) 82
BstDSI CCRYGG 1 cut(s) 163
BstKTI GATC 3 cut(s) 94, 364, 490
BstMBI GATC 3 cut(s) 91, 361, 487
BstMWI GCNNNNNNNGC 3 cut(s) 334, 347, 356
BstNI CCWGG 1 cut(s) 369
BstSCI CCNGG 1 cut(s) 367
BstSLI GKGCMC 1 cut(s) 71
BstV1I GCAGC 2 cut(s) 384, 419
BsuRI GGCC 1 cut(s) 482
BtgI CCRYGG 1 cut(s) 163
Cac8I GCNNGC 1 cut(s) 339
Cfr13I GGNCC 3 cut(s) 317, 354, 480
Csp6I GTAC 2 cut(s) 534, 574
CviAII CATG 2 cut(s) 148, 164
CviJI RGCY 9 cut(s) 29, 119, 135, 162, 299, 337, 375, 410, 482
CviKI_1 RGCY 9 cut(s) 29, 119, 135, 162, 299, 337, 375, 410, 482
CviQI GTAC 2 cut(s) 534, 574
DdeI CTNAG 1 cut(s) 82
DpnI GATC 3 cut(s) 93, 363, 489
DpnII GATC 3 cut(s) 91, 361, 487
Eam1104I CTCTTC 2 cut(s) 51, 509
EarI CTCTTC 2 cut(s) 51, 509
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 163
Eco47I GGWCC 2 cut(s) 317, 354
Eco88I CYCGRG 1 cut(s) 205
EcoO109I RGGNCCY 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 367
EcoT14I CCWWGG 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 163
FaeI CATG 2 cut(s) 151, 167
FaiI YATR 8 cut(s) 48, 96, 98, 149, 165, 302, 550, 581
FaqI GGGAC 1 cut(s) 367
FatI CATG 2 cut(s) 147, 163
Fnu4HI GCNGC 2 cut(s) 373, 408
Fsp4HI GCNGC 2 cut(s) 373, 408
FspBI CTAG 2 cut(s) 198, 447
GluI GCNGC 2 cut(s) 373, 408
HaeIII GGCC 1 cut(s) 482
HapII CCGG 1 cut(s) 463
Hin1II CATG 2 cut(s) 151, 167
HinfI GANTC 1 cut(s) 201
HpaII CCGG 1 cut(s) 463
HphI GGTGA 2 cut(s) 300, 356
Hpy166II GTNNAC 1 cut(s) 385
Hpy188I TCNGA 3 cut(s) 91, 130, 393
Hpy188III TCNNGA 4 cut(s) 198, 205, 207, 596
Hpy8I GTNNAC 1 cut(s) 385
HpyCH4III ACNGT 1 cut(s) 400
HpyCH4V TGCA 3 cut(s) 191, 350, 515
HpyF10VI GCNNNNNNNGC 3 cut(s) 334, 347, 356
HpyF3I CTNAG 1 cut(s) 82
Hsp92II CATG 2 cut(s) 151, 167
Kzo9I GATC 3 cut(s) 91, 361, 487
LpnPI CCDG 7 cut(s) 86, 276, 336, 351, 354, 381, 476
Lsp1109I GCAGC 2 cut(s) 384, 419
LweI GCATC 2 cut(s) 177, 428
MaeI CTAG 2 cut(s) 198, 447
MaeIII GTNAC 3 cut(s) 184, 228, 400
MalI GATC 3 cut(s) 93, 363, 489
MboI GATC 3 cut(s) 91, 361, 487
MboII GAAGA 6 cut(s) 68, 259, 262, 462, 496, 499
MfeI CAATTG 1 cut(s) 564
MhlI GDGCHC 1 cut(s) 71
MluCI AATT 4 cut(s) 9, 193, 268, 564
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 3 cut(s) 34, 489, 577
MroXI GAANNNNTTC 1 cut(s) 214
MslI CAYNNNNRTG 1 cut(s) 99
MspA1I CMGCKG 2 cut(s) 119, 341
MspI CCGG 1 cut(s) 463
MspR9I CCNGG 1 cut(s) 369
MunI CAATTG 1 cut(s) 564
MvaI CCWGG 1 cut(s) 369
MwoI GCNNNNNNNGC 3 cut(s) 334, 347, 356
NcoI CCATGG 1 cut(s) 163
NdeII GATC 3 cut(s) 91, 361, 487
NlaIII CATG 2 cut(s) 151, 167
NlaIV GGNNCC 3 cut(s) 70, 355, 421
NmuCI GTSAC 2 cut(s) 228, 400
PaeR7I CTCGAG 1 cut(s) 205
PdmI GAANNNNTTC 1 cut(s) 214
PfeI GAWTC 1 cut(s) 201
PkrI GCNGC 2 cut(s) 374, 409
PpuMI RGGWCCY 1 cut(s) 317
Psp5II RGGWCCY 1 cut(s) 317
Psp6I CCWGG 1 cut(s) 367
PspGI CCWGG 1 cut(s) 367
PspN4I GGNNCC 3 cut(s) 70, 355, 421
PspPI GGNCC 3 cut(s) 317, 354, 480
PspPPI RGGWCCY 1 cut(s) 317
PvuII CAGCTG 1 cut(s) 119
RsaI GTAC 2 cut(s) 535, 575
RsaNI GTAC 2 cut(s) 534, 574
RseI CAYNNNNRTG 1 cut(s) 99
SatI GCNGC 2 cut(s) 373, 408
Sau3AI GATC 3 cut(s) 91, 361, 487
Sau96I GGNCC 3 cut(s) 317, 354, 480
ScrFI CCNGG 1 cut(s) 369
SduI GDGCHC 1 cut(s) 71
SetI ASST 6 cut(s) 45, 121, 137, 295, 301, 319
SfaNI GCATC 2 cut(s) 177, 428
Sfr274I CTCGAG 1 cut(s) 205
SinI GGWCC 2 cut(s) 317, 354
SlaI CTCGAG 1 cut(s) 205
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 205
SmoI CTYRAG 1 cut(s) 205
Sse9I AATT 4 cut(s) 9, 193, 268, 564
SsiI CCGC 3 cut(s) 5, 341, 357
SspMI CTAG 2 cut(s) 198, 447
StyD4I CCNGG 1 cut(s) 367
StyI CCWWGG 1 cut(s) 163
TaaI ACNGT 1 cut(s) 400
TaqI TCGA 1 cut(s) 206
TasI AATT 4 cut(s) 9, 193, 268, 564
TatI WGTACW 1 cut(s) 573
TfiI GAWTC 1 cut(s) 201
TseFI GTSAC 2 cut(s) 228, 400
TseI GCWGC 2 cut(s) 372, 407
Tsp45I GTSAC 2 cut(s) 228, 400
TspDTI ATGAA 1 cut(s) 462
VpaK11BI GGWCC 2 cut(s) 317, 354
XapI RAATTY 3 cut(s) 9, 193, 268
XbaI TCTAGA 1 cut(s) 197
XcmI CCANNNNNNNNNTGG 1 cut(s) 22
XhoI CTCGAG 1 cut(s) 205
XmnI GAANNNNTTC 1 cut(s) 214
XspI CTAG 2 cut(s) 198, 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.