Rorug04G0409100

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0004788
Physical Location & Seq
Reverse (-)
57163623 .. 57164765
1143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0409100.1

Sequence Viewer

Length: 1143 bp
ATGGCTTCTTCTTCTTCAACCTCACTCTTCCTCTTCTTCTCTCTCCTCCTCCTCCTCTCTCTCCTCTCCTTCTCCTCCGCCCAAACCATCACCAACGCCGCCGAGATCCTCTCCAATTCCGGCTACAAATCCATGTCCCTCGCCCTCGACCTCGCCTCTCACTCCATCACCTCCCAGTCGCCGTCGATCACCGTCTTCGCTCCGGCCGACGCCGCCTTCGCCTACTCCGGCCACCCCACTCTCAACCTCCTCCGCTACCACCTCCTCCCCATCGCTTTCCCTCTCCGATCACTCAAGTCCCTCCCGTTCGGCGCCAAGATCCCCACTCTGCTCGACGGCCACTCTCTCACCGTCACCACTCTTCCGGCCGACCGCCTCGTCTCTCTCAACAACGTCACCATCACGGCGGCCCCAATTTTCGACGACGGGTCGTTGATCGTCTTCGGAACCAGCGGATTCTTCAACCGGTATTTCCGGATCTCGGGTCCGATTGGGAGCTACAGCCCCAAGACTCTAGGCTGCTTGGCGCCGCGAAACCCTAACAGAGCGATGGCGGTCGAAACGGCGGCGTATTACCCGTTCAGTGAAGCAAGCAAGGTGCTGAGATCGAAAGGCTGCTCTGTCATGGCTTCGTTTCTTGAAATGCAATTCCATGGGTTTCTCAAGTACCAGACCATGTTGACCGTCTTCGCTCCCGTTGACCAAGTCATGGTGAAGCGGATCGGAAATCTGAGCGAGTACTCGTCGATGTTGCGCCGCCACGTGGTCCCCTGCCGGCTTTCTTGGAGCGATTTGAAGAGTCTTGAGGATGGGACTGTGTTGAGGACTAATCTGCAAGGGTTTATGATCAACGTGAGTCGATACGACAGCGTTTTTGTGCTCAATGGGGTCCCGGTGATTATGCCGGAGCTGTATCACAACGGCTGGCTTGTGGTTCACGGAATCAGTGAGGTTCTTGAACTTCCAGTGAGCCTAACTCAGAGCCCAATTCAGAGTCAAACGGAGCCAGTGGTGGATACGGTGGATCCGGTGGCTTCTTCACCTCCCTCTCCGGCACTTCATCGCAGCTCCGGTGAGGTTCTTTGTTTGCAGGCCTTCATAATCTGGGTACCTTTTCTCTTTTTCTATGTTTTTAGGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

380

Amino Acids

41.56

Weight (kDa)

8.31

Isoelectric Point (pI)

52.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 207 - 319 5.9e-09 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 377
Acc65I GGTACC 1 cut(s) 1108
AccB1I GGYRCC 3 cut(s) 311, 526, 1108
AccB7I CCANNNNNTGG 1 cut(s) 709
AccII CGCG 1 cut(s) 532
AccIII TCCGGA 1 cut(s) 474
AclWI GGATC 6 cut(s) 100, 313, 485, 728, 1019, 1032
AcoI YGGCCR 4 cut(s) 204, 229, 337, 366
AcvI CACGTG 1 cut(s) 763
AcyI GRCGYC 3 cut(s) 210, 312, 527
AfaI GTAC 3 cut(s) 668, 740, 1110
AfiI CCNNNNNNNGG 3 cut(s) 481, 709, 763
AgeI ACCGGT 1 cut(s) 465
AgsI TTSAA 5 cut(s) 18, 463, 641, 796, 959
AhdI GACNNNNNGTC 1 cut(s) 427
AluBI AGCT 3 cut(s) 498, 910, 1068
AluI AGCT 3 cut(s) 498, 910, 1068
Alw21I GWGCWC 1 cut(s) 882
Alw26I GTCTC 1 cut(s) 385
AlwI GGATC 6 cut(s) 100, 313, 485, 728, 1019, 1032
Ama87I CYCGRG 1 cut(s) 481
Aor13HI TCCGGA 1 cut(s) 474
AoxI GGCC 7 cut(s) 204, 229, 337, 366, 408, 1092, 1136
ApeKI GCWGC 3 cut(s) 519, 615, 1065
ArsI GACNNNNNNTTYG 4 cut(s) 200, 232, 857, 889
AsiGI ACCGGT 1 cut(s) 465
Asp718I GGTACC 1 cut(s) 1108
AspLEI GCGC 3 cut(s) 314, 529, 756
AspS9I GGNCC 4 cut(s) 409, 485, 766, 889
AsuC2I CCSGG 1 cut(s) 893
AvaI CYCGRG 1 cut(s) 481
AvaII GGWCC 3 cut(s) 485, 766, 889
BamHI GGATCC 1 cut(s) 1024
BanI GGYRCC 3 cut(s) 311, 526, 1108
BanII GRGCYC 1 cut(s) 986
BbrPI CACGTG 1 cut(s) 763
BbsI GAAGAC 3 cut(s) 187, 433, 679
Bbv12I GWGCWC 1 cut(s) 882
BbvI GCAGC 3 cut(s) 506, 602, 1077
BccI CCATC 6 cut(s) 95, 173, 278, 407, 544, 803
BceAI ACGGC 5 cut(s) 166, 352, 420, 579, 937
BciVI GTATCC 1 cut(s) 1009
BclI TGATCA 1 cut(s) 846
BcnI CCSGG 1 cut(s) 893
BcoDI GTCTC 1 cut(s) 385
BfaI CTAG 1 cut(s) 515
BfmI CTRYAG 1 cut(s) 499
BfoI RGCGCY 2 cut(s) 315, 530
BfuI GTATCC 1 cut(s) 1009
BisI GCNGC 9 cut(s) 99, 213, 408, 520, 530, 567, 616, 757, 1066
BlsI GCNGC 9 cut(s) 100, 214, 409, 521, 531, 568, 617, 758, 1067
BmcAI AGTACT 1 cut(s) 740
Bme1390I CCNGG 1 cut(s) 893
Bme18I GGWCC 3 cut(s) 485, 766, 889
BmeRI GACNNNNNGTC 1 cut(s) 427
BmeT110I CYCGRG 1 cut(s) 481
BmgT120I GGNCC 4 cut(s) 409, 485, 766, 889
BmrFI CCNGG 1 cut(s) 893
BmrI ACTGGG 1 cut(s) 169
BmuI ACTGGG 1 cut(s) 169
BpiI GAAGAC 3 cut(s) 187, 433, 679
BplI GAGNNNNNCTC 4 cut(s) 95, 127, 961, 993
BpuEI CTTGAG 3 cut(s) 278, 647, 824
BpuMI CCSGG 1 cut(s) 893
BsaAI YACGTR 1 cut(s) 763
BsaHI GRCGYC 3 cut(s) 210, 312, 527
BsaJI CCNNGG 1 cut(s) 652
BsaWI WCCGGW 4 cut(s) 465, 474, 1027, 1070
Bsc4I CCNNNNNNNGG 3 cut(s) 481, 709, 763
Bse118I RCCGGY 2 cut(s) 465, 774
Bse1I ACTGG 3 cut(s) 175, 965, 1007
BseAI TCCGGA 1 cut(s) 474
BseDI CCNNGG 1 cut(s) 652
BseGI GGATG 1 cut(s) 814
BseLI CCNNNNNNNGG 3 cut(s) 481, 709, 763
BseMII CTCAG 3 cut(s) 593, 722, 992
BseNI ACTGG 3 cut(s) 175, 965, 1007
BseRI GAGGAG 8 cut(s) 35, 38, 41, 44, 53, 64, 239, 254
BseX3I CGGCCG 2 cut(s) 204, 366
BseXI GCAGC 3 cut(s) 506, 602, 1077
Bsh1236I CGCG 1 cut(s) 532
Bsh1285I CGRYCG 4 cut(s) 207, 369, 373, 558
BshFI GGCC 7 cut(s) 206, 231, 339, 368, 410, 1094, 1138
BshNI GGYRCC 3 cut(s) 311, 526, 1108
BshTI ACCGGT 1 cut(s) 465
BsiEI CGRYCG 4 cut(s) 207, 369, 373, 558
BsiHKAI GWGCWC 1 cut(s) 882
BsiHKCI CYCGRG 1 cut(s) 481
BslFI GGGAC 5 cut(s) 121, 283, 752, 826, 875
BslI CCNNNNNNNGG 3 cut(s) 481, 709, 763
BsmAI GTCTC 1 cut(s) 385
BsmBI CGTCTC 1 cut(s) 385
BsmFI GGGAC 5 cut(s) 121, 283, 752, 826, 875
BsnI GGCC 7 cut(s) 206, 231, 339, 368, 410, 1094, 1138
BsoBI CYCGRG 1 cut(s) 481
Bsp1286I GDGCHC 2 cut(s) 882, 986
Bsp13I TCCGGA 1 cut(s) 474
Bsp19I CCATGG 1 cut(s) 652
BspANI GGCC 7 cut(s) 206, 231, 339, 368, 410, 1094, 1138
BspCNI CTCAG 3 cut(s) 594, 723, 991
BspEI TCCGGA 1 cut(s) 474
BspFNI CGCG 1 cut(s) 532
BspPI GGATC 6 cut(s) 100, 313, 485, 728, 1019, 1032
BspT107I GGYRCC 3 cut(s) 311, 526, 1108
BsrFI RCCGGY 2 cut(s) 465, 774
BsrI ACTGG 3 cut(s) 175, 965, 1007
BssAI RCCGGY 2 cut(s) 465, 774
BssECI CCNNGG 1 cut(s) 652
BssNI GRCGYC 3 cut(s) 210, 312, 527
BssT1I CCWWGG 1 cut(s) 652
Bst4CI ACNGT 5 cut(s) 193, 352, 685, 817, 1021
Bst6I CTCTTC 4 cut(s) 32, 38, 366, 791
BstACI GRCGYC 3 cut(s) 210, 312, 527
BstBAI YACGTR 1 cut(s) 763
BstC8I GCNNGC 4 cut(s) 592, 776, 926, 1092
BstDEI CTNAG 3 cut(s) 602, 731, 978
BstDSI CCRYGG 1 cut(s) 652
BstF5I GGATG 1 cut(s) 814
BstFNI CGCG 1 cut(s) 532
BstH2I RGCGCY 2 cut(s) 315, 530
BstHHI GCGC 3 cut(s) 314, 529, 756
BstMAI GTCTC 1 cut(s) 385
BstMCI CGRYCG 4 cut(s) 207, 369, 373, 558
BstMWI GCNNNNNNNGC 2 cut(s) 212, 218
BstSCI CCNGG 1 cut(s) 891
BstSFI CTRYAG 1 cut(s) 499
BstUI CGCG 1 cut(s) 532
BstV1I GCAGC 3 cut(s) 506, 602, 1077
BstV2I GAAGAC 3 cut(s) 187, 433, 679
BstX2I RGATCY 4 cut(s) 105, 318, 477, 1024
BstYI RGATCY 4 cut(s) 105, 318, 477, 1024
BstZI CGGCCG 2 cut(s) 204, 366
BsuI GTATCC 1 cut(s) 1009
BsuRI GGCC 7 cut(s) 206, 231, 339, 368, 410, 1094, 1138
BtgI CCRYGG 1 cut(s) 652
BtgZI GCGATG 3 cut(s) 256, 563, 1046
BtsCI GGATG 1 cut(s) 814
BtsIMutI CAGTG 4 cut(s) 589, 952, 972, 1014
Cac8I GCNNGC 4 cut(s) 592, 776, 926, 1092
CfoI GCGC 3 cut(s) 314, 529, 756
Cfr10I RCCGGY 2 cut(s) 465, 774
Cfr13I GGNCC 4 cut(s) 409, 485, 766, 889
CseI GACGC 1 cut(s) 218
Csp6I GTAC 3 cut(s) 667, 739, 1109
CspAI ACCGGT 1 cut(s) 465
CviAII CATG 5 cut(s) 133, 625, 653, 676, 709
CviQI GTAC 3 cut(s) 667, 739, 1109
DdeI CTNAG 3 cut(s) 602, 731, 978
DinI GGCGCC 2 cut(s) 313, 528
DrdI GACNNNNNNGTC 1 cut(s) 377
DriI GACNNNNNGTC 1 cut(s) 427
DseDI GACNNNNNNGTC 1 cut(s) 377
EaeI YGGCCR 4 cut(s) 204, 229, 337, 366
EagI CGGCCG 2 cut(s) 204, 366
Eam1104I CTCTTC 4 cut(s) 32, 38, 366, 791
Eam1105I GACNNNNNGTC 1 cut(s) 427
EarI CTCTTC 4 cut(s) 32, 38, 366, 791
EciI GGCGGA 1 cut(s) 67
EclXI CGGCCG 2 cut(s) 204, 366
Eco130I CCWWGG 1 cut(s) 652
Eco147I AGGCCT 2 cut(s) 1094, 1138
Eco24I GRGCYC 1 cut(s) 986
Eco47I GGWCC 3 cut(s) 485, 766, 889
Eco52I CGGCCG 2 cut(s) 204, 366
Eco72I CACGTG 1 cut(s) 763
Eco88I CYCGRG 1 cut(s) 481
EcoO109I RGGNCCY 1 cut(s) 889
EcoT14I CCWWGG 1 cut(s) 652
EcoT38I GRGCYC 1 cut(s) 986
EgeI GGCGCC 2 cut(s) 313, 528
EheI GGCGCC 2 cut(s) 313, 528
ErhI CCWWGG 1 cut(s) 652
Esp3I CGTCTC 1 cut(s) 385
FaeI CATG 5 cut(s) 136, 628, 656, 679, 712
FaiI YATR 9 cut(s) 134, 626, 654, 677, 710, 845, 902, 1100, 1128
FaqI GGGAC 5 cut(s) 121, 283, 752, 826, 875
FatI CATG 5 cut(s) 132, 624, 652, 675, 708
FbaI TGATCA 1 cut(s) 846
Fnu4HI GCNGC 9 cut(s) 99, 213, 408, 520, 530, 567, 616, 757, 1066
FokI GGATG 1 cut(s) 821
FriOI GRGCYC 1 cut(s) 986
Fsp4HI GCNGC 9 cut(s) 99, 213, 408, 520, 530, 567, 616, 757, 1066
FspBI CTAG 1 cut(s) 515
GlaI GCGC 3 cut(s) 313, 528, 755
GluI GCNGC 9 cut(s) 99, 213, 408, 520, 530, 567, 616, 757, 1066
HaeII RGCGCY 2 cut(s) 315, 530
HaeIII GGCC 7 cut(s) 206, 231, 339, 368, 410, 1094, 1138
HgaI GACGC 1 cut(s) 218
HhaI GCGC 3 cut(s) 314, 529, 756
Hin1I GRCGYC 3 cut(s) 210, 312, 527
Hin1II CATG 5 cut(s) 136, 628, 656, 679, 712
Hin6I GCGC 3 cut(s) 312, 527, 754
HinP1I GCGC 3 cut(s) 312, 527, 754
HincII GTYRAC 2 cut(s) 681, 700
HindII GTYRAC 2 cut(s) 681, 700
HinfI GANTC 6 cut(s) 456, 511, 799, 856, 942, 994
Hpy166II GTNNAC 3 cut(s) 681, 700, 937
Hpy188I TCNGA 7 cut(s) 287, 446, 489, 725, 732, 981, 993
Hpy188III TCNNGA 4 cut(s) 475, 638, 803, 956
Hpy8I GTNNAC 3 cut(s) 681, 700, 937
Hpy99I CGWCG 6 cut(s) 187, 212, 338, 425, 428, 748
HpyAV CCTTC 3 cut(s) 79, 226, 1105
HpyCH4III ACNGT 5 cut(s) 193, 352, 685, 817, 1021
HpyCH4IV ACGT 3 cut(s) 393, 762, 852
HpyCH4V TGCA 3 cut(s) 646, 835, 1090
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 218
HpyF3I CTNAG 3 cut(s) 602, 731, 978
HpySE526I ACGT 3 cut(s) 393, 762, 852
Hsp92I GRCGYC 3 cut(s) 210, 312, 527
Hsp92II CATG 5 cut(s) 136, 628, 656, 679, 712
HspAI GCGC 3 cut(s) 312, 527, 754
KasI GGCGCC 2 cut(s) 311, 526
KflI GGGWCCC 1 cut(s) 889
Kpn2I TCCGGA 1 cut(s) 474
KpnI GGTACC 1 cut(s) 1112
KroI GCCGGC 1 cut(s) 774
KroNI GCCGGC 1 cut(s) 776
Ksp22I TGATCA 1 cut(s) 846
LmnI GCTCC 7 cut(s) 205, 495, 697, 786, 907, 1003, 1073
Lsp1109I GCAGC 3 cut(s) 506, 602, 1077
MaeI CTAG 1 cut(s) 515
MaeII ACGT 3 cut(s) 393, 762, 852
MaeIII GTNAC 2 cut(s) 352, 394
MflI RGATCY 4 cut(s) 105, 318, 477, 1024
MhlI GDGCHC 2 cut(s) 882, 986
MluCI AATT 4 cut(s) 115, 414, 647, 987
Mly113I GGCGCC 2 cut(s) 312, 527
MlyI GAGTC 4 cut(s) 505, 808, 865, 1003
MroI TCCGGA 1 cut(s) 474
MroNI GCCGGC 1 cut(s) 774
MspA1I CMGCKG 1 cut(s) 453
MspR9I CCNGG 1 cut(s) 893
MvnI CGCG 1 cut(s) 532
MwoI GCNNNNNNNGC 2 cut(s) 212, 218
NaeI GCCGGC 1 cut(s) 776
NarI GGCGCC 2 cut(s) 312, 527
NciI CCSGG 1 cut(s) 893
NcoI CCATGG 1 cut(s) 652
NgoMIV GCCGGC 1 cut(s) 774
NlaIII CATG 5 cut(s) 136, 628, 656, 679, 712
NmeAIII GCCGAG 1 cut(s) 127
NmuCI GTSAC 2 cut(s) 352, 394
PceI AGGCCT 2 cut(s) 1094, 1138
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PdiI GCCGGC 1 cut(s) 776
PfeI GAWTC 2 cut(s) 456, 942
PflFI GACNNNGTC 1 cut(s) 704
PflMI CCANNNNNTGG 1 cut(s) 709
PinAI ACCGGT 1 cut(s) 465
PkrI GCNGC 9 cut(s) 100, 214, 409, 521, 531, 568, 617, 758, 1067
PleI GAGTC 4 cut(s) 505, 807, 864, 1002
PluTI GGCGCC 2 cut(s) 315, 530
PmaCI CACGTG 1 cut(s) 763
PmlI CACGTG 1 cut(s) 763
PpsI GAGTC 4 cut(s) 505, 807, 864, 1002
Ppu21I YACGTR 1 cut(s) 763
PpuMI RGGWCCY 1 cut(s) 889
Psp5II RGGWCCY 1 cut(s) 889
PspCI CACGTG 1 cut(s) 763
PspPI GGNCC 4 cut(s) 409, 485, 766, 889
PspPPI RGGWCCY 1 cut(s) 889
PsrI GAACNNNNNNTAC 2 cut(s) 563, 595
PsuI RGATCY 4 cut(s) 105, 318, 477, 1024
PsyI GACNNNGTC 1 cut(s) 704
RsaI GTAC 3 cut(s) 668, 740, 1110
RsaNI GTAC 3 cut(s) 667, 739, 1109
SatI GCNGC 9 cut(s) 99, 213, 408, 520, 530, 567, 616, 757, 1066
Sau96I GGNCC 4 cut(s) 409, 485, 766, 889
ScaI AGTACT 1 cut(s) 740
SchI GAGTC 4 cut(s) 505, 808, 865, 1003
ScrFI CCNGG 1 cut(s) 893
SduI GDGCHC 2 cut(s) 882, 986
SfcI CTRYAG 1 cut(s) 499
SfoI GGCGCC 2 cut(s) 313, 528
SinI GGWCC 3 cut(s) 485, 766, 889
SmlI CTYRAG 3 cut(s) 293, 662, 803
SmoI CTYRAG 3 cut(s) 293, 662, 803
Sse9I AATT 4 cut(s) 115, 414, 647, 987
SseBI AGGCCT 2 cut(s) 1094, 1138
SspDI GGCGCC 2 cut(s) 311, 526
SspMI CTAG 1 cut(s) 515
StuI AGGCCT 2 cut(s) 1094, 1138
StyD4I CCNGG 1 cut(s) 891
StyI CCWWGG 1 cut(s) 652
TaaI ACNGT 5 cut(s) 193, 352, 685, 817, 1021
TaiI ACGT 3 cut(s) 396, 765, 855
TaqI TCGA 8 cut(s) 147, 185, 333, 420, 558, 608, 746, 859
TasI AATT 4 cut(s) 115, 414, 647, 987
TatI WGTACW 1 cut(s) 738
TauI GCSGC 6 cut(s) 101, 215, 410, 532, 569, 759
TfiI GAWTC 2 cut(s) 456, 942
TscAI CASTG 4 cut(s) 589, 952, 972, 1014
TseFI GTSAC 2 cut(s) 352, 394
TseI GCWGC 3 cut(s) 519, 615, 1065
Tsp45I GTSAC 2 cut(s) 352, 394
TspDTI ATGAA 2 cut(s) 1049, 1087
TspGWI ACGGA 2 cut(s) 954, 1016
TspRI CASTG 4 cut(s) 589, 952, 972, 1014
Tth111I GACNNNGTC 1 cut(s) 704
Van91I CCANNNNNTGG 1 cut(s) 709
VpaK11BI GGWCC 3 cut(s) 485, 766, 889
XspI CTAG 1 cut(s) 515
ZrmI AGTACT 1 cut(s) 740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.