Rh5CG039500

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0004788
Physical Location & Seq
Reverse (-)
2522313 .. 2525880
3568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG039500.1

Sequence Viewer

Length: 549 bp
ATGGGCACCCAGAAAATCTCAGTTTCGGATCATATAAATGGATTTCACTACACAGCTGATAAATCTGATAGCTTTGTGATTGACATGGAGAGTTTCAACCATGGCATCACAGATAAAGATGTAACTGCAAATTCTAGAATCTCGTTGCAGAGAAATCTTTCAAGGAAATGGTCACAGAGAGTTGGAGAGAAGAAGATAAGCACTGATGGTAATTCAAATGATAGAGATGTTTCAGGTTCAGCTATAACTTCACCCAAAGGTCCTATTACGCCCGAAAAGCCAGCGGTGGTTGCAGGGACCGCAGATCACCCGGGCAGCCCACAAGTCCACCATCAGATTACCGTCACAGCGGCCAACATTGGCACCACCACCGATGGCAGATGCGTTGCTAGGAGAAATAGTTTCCGGCGTTCTTCATCATGGGCAGTTGATCCCAAGAGGGTTCTCTTCTTCTTTGCAACATTGTCAAGCATTGGTACAATCTTATTGATATACTTCACACTTACAATTGGCAAGTACAATATAGAGGAAAATAGTCTTGATTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

19.99

Weight (kDa)

9.1

Isoelectric Point (pI)

40.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 5, 362
AciI CCGC 3 cut(s) 284, 300, 350
AclWI GGATC 2 cut(s) 36, 425
AcoI YGGCCR 1 cut(s) 351
AcsI RAATTY 1 cut(s) 130
AfaI GTAC 2 cut(s) 478, 518
AgsI TTSAA 3 cut(s) 97, 162, 216
AluBI AGCT 3 cut(s) 56, 72, 242
AluI AGCT 3 cut(s) 56, 72, 242
AlwI GGATC 2 cut(s) 36, 425
Ama87I CYCGRG 1 cut(s) 310
AoxI GGCC 1 cut(s) 351
ApeKI GCWGC 1 cut(s) 315
ApoI RAATTY 1 cut(s) 130
Asp700I GAANNNNTTC 1 cut(s) 157
AspS9I GGNCC 2 cut(s) 260, 297
AsuC2I CCSGG 2 cut(s) 311, 312
AsuHPI GGTGA 2 cut(s) 243, 299
AvaI CYCGRG 1 cut(s) 310
AvaII GGWCC 2 cut(s) 260, 297
BaeGI GKGCMC 1 cut(s) 8
BanI GGYRCC 2 cut(s) 5, 362
BbvI GCAGC 1 cut(s) 327
BccI CCATC 3 cut(s) 200, 339, 368
BcnI CCSGG 2 cut(s) 311, 312
BfaI CTAG 2 cut(s) 135, 390
BisI GCNGC 2 cut(s) 316, 351
BlsI GCNGC 2 cut(s) 317, 352
Bme1390I CCNGG 2 cut(s) 311, 312
Bme18I GGWCC 2 cut(s) 260, 297
BmeT110I CYCGRG 1 cut(s) 310
BmgT120I GGNCC 2 cut(s) 260, 297
BmiI GGNNCC 3 cut(s) 7, 298, 364
BmrFI CCNGG 2 cut(s) 311, 312
BmsI GCATC 2 cut(s) 114, 371
BpuMI CCSGG 2 cut(s) 311, 312
BsaJI CCNNGG 2 cut(s) 100, 310
BsaXI ACNNNNNCTCC 2 cut(s) 385, 415
BseDI CCNNGG 2 cut(s) 100, 310
BseMII CTCAG 1 cut(s) 33
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 1 cut(s) 327
BshFI GGCC 1 cut(s) 353
BshNI GGYRCC 2 cut(s) 5, 362
BsiHKCI CYCGRG 1 cut(s) 310
BsiSI CCGG 2 cut(s) 311, 406
BslFI GGGAC 1 cut(s) 310
BsmFI GGGAC 1 cut(s) 310
BsnI GGCC 1 cut(s) 353
BsoBI CYCGRG 1 cut(s) 310
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 3 cut(s) 28, 304, 430
Bsp19I CCATGG 1 cut(s) 100
BspACI CCGC 3 cut(s) 284, 300, 350
BspANI GGCC 1 cut(s) 353
BspCNI CTCAG 1 cut(s) 32
BspLI GGNNCC 3 cut(s) 7, 298, 364
BspPI GGATC 2 cut(s) 36, 425
BspT107I GGYRCC 2 cut(s) 5, 362
BssECI CCNNGG 2 cut(s) 100, 310
BssMI GATC 3 cut(s) 28, 304, 430
BssT1I CCWWGG 1 cut(s) 100
Bst4CI ACNGT 1 cut(s) 343
Bst6I CTCTTC 1 cut(s) 452
BstC8I GCNNGC 1 cut(s) 282
BstDEI CTNAG 1 cut(s) 19
BstDSI CCRYGG 1 cut(s) 100
BstKTI GATC 3 cut(s) 31, 307, 433
BstMBI GATC 3 cut(s) 28, 304, 430
BstMWI GCNNNNNNNGC 3 cut(s) 277, 290, 299
BstSCI CCNGG 2 cut(s) 309, 310
BstSLI GKGCMC 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 327
BsuRI GGCC 1 cut(s) 353
BtgI CCRYGG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 201
Cac8I GCNNGC 1 cut(s) 282
Cfr13I GGNCC 2 cut(s) 260, 297
Cfr9I CCCGGG 1 cut(s) 310
Csp6I GTAC 2 cut(s) 477, 517
CviAII CATG 3 cut(s) 85, 101, 420
CviJI RGCY 6 cut(s) 56, 72, 242, 280, 318, 353
CviKI_1 RGCY 6 cut(s) 56, 72, 242, 280, 318, 353
CviQI GTAC 2 cut(s) 477, 517
DdeI CTNAG 1 cut(s) 19
DpnI GATC 3 cut(s) 30, 306, 432
DpnII GATC 3 cut(s) 28, 304, 430
EaeI YGGCCR 1 cut(s) 351
Eam1104I CTCTTC 1 cut(s) 452
EarI CTCTTC 1 cut(s) 452
Eco130I CCWWGG 1 cut(s) 100
Eco47I GGWCC 2 cut(s) 260, 297
Eco88I CYCGRG 1 cut(s) 310
EcoO109I RGGNCCY 1 cut(s) 260
EcoT14I CCWWGG 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 100
FaeI CATG 3 cut(s) 88, 104, 423
FaiI YATR 8 cut(s) 33, 35, 86, 102, 245, 421, 493, 524
FaqI GGGAC 1 cut(s) 310
FatI CATG 3 cut(s) 84, 100, 419
Fnu4HI GCNGC 2 cut(s) 316, 351
Fsp4HI GCNGC 2 cut(s) 316, 351
FspBI CTAG 2 cut(s) 135, 390
GluI GCNGC 2 cut(s) 316, 351
HaeIII GGCC 1 cut(s) 353
HapII CCGG 2 cut(s) 311, 406
Hin1II CATG 3 cut(s) 88, 104, 423
HinfI GANTC 1 cut(s) 138
HpaII CCGG 2 cut(s) 311, 406
HphI GGTGA 2 cut(s) 243, 299
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 3 cut(s) 28, 67, 336
Hpy188III TCNNGA 2 cut(s) 135, 539
Hpy8I GTNNAC 1 cut(s) 328
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4V TGCA 4 cut(s) 128, 148, 293, 458
HpyF10VI GCNNNNNNNGC 3 cut(s) 277, 290, 299
HpyF3I CTNAG 1 cut(s) 19
Hsp92II CATG 3 cut(s) 88, 104, 423
Kzo9I GATC 3 cut(s) 28, 304, 430
LpnPI CCDG 6 cut(s) 23, 219, 279, 294, 324, 419
Lsp1109I GCAGC 1 cut(s) 327
LweI GCATC 2 cut(s) 114, 371
MaeI CTAG 2 cut(s) 135, 390
MaeIII GTNAC 3 cut(s) 121, 171, 343
MalI GATC 3 cut(s) 30, 306, 432
MboI GATC 3 cut(s) 28, 304, 430
MboII GAAGA 5 cut(s) 202, 205, 405, 439, 442
MfeI CAATTG 1 cut(s) 507
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 3 cut(s) 130, 211, 507
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 2 cut(s) 432, 520
MroXI GAANNNNTTC 1 cut(s) 157
MslI CAYNNNNRTG 1 cut(s) 36
MspA1I CMGCKG 3 cut(s) 56, 284, 350
MspI CCGG 2 cut(s) 311, 406
MspR9I CCNGG 2 cut(s) 311, 312
MunI CAATTG 1 cut(s) 507
MwoI GCNNNNNNNGC 3 cut(s) 277, 290, 299
NciI CCSGG 2 cut(s) 311, 312
NcoI CCATGG 1 cut(s) 100
NdeII GATC 3 cut(s) 28, 304, 430
NlaIII CATG 3 cut(s) 88, 104, 423
NlaIV GGNNCC 3 cut(s) 7, 298, 364
NmuCI GTSAC 2 cut(s) 171, 343
PdmI GAANNNNTTC 1 cut(s) 157
PfeI GAWTC 1 cut(s) 138
PkrI GCNGC 2 cut(s) 317, 352
PpuMI RGGWCCY 1 cut(s) 260
Psp5II RGGWCCY 1 cut(s) 260
PspN4I GGNNCC 3 cut(s) 7, 298, 364
PspPI GGNCC 2 cut(s) 260, 297
PspPPI RGGWCCY 1 cut(s) 260
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 2 cut(s) 478, 518
RsaNI GTAC 2 cut(s) 477, 517
RseI CAYNNNNRTG 1 cut(s) 36
SatI GCNGC 2 cut(s) 316, 351
Sau3AI GATC 3 cut(s) 28, 304, 430
Sau96I GGNCC 2 cut(s) 260, 297
ScrFI CCNGG 2 cut(s) 311, 312
SduI GDGCHC 1 cut(s) 8
SetI ASST 5 cut(s) 58, 74, 238, 244, 262
SfaNI GCATC 2 cut(s) 114, 371
SinI GGWCC 2 cut(s) 260, 297
SmaI CCCGGG 1 cut(s) 312
SmiMI CAYNNNNRTG 1 cut(s) 36
Sse9I AATT 3 cut(s) 130, 211, 507
SsiI CCGC 3 cut(s) 284, 300, 350
SspMI CTAG 2 cut(s) 135, 390
StyD4I CCNGG 2 cut(s) 309, 310
StyI CCWWGG 1 cut(s) 100
TaaI ACNGT 1 cut(s) 343
TasI AATT 3 cut(s) 130, 211, 507
TatI WGTACW 1 cut(s) 516
TauI GCSGC 1 cut(s) 353
TfiI GAWTC 1 cut(s) 138
TscAI CASTG 1 cut(s) 208
TseFI GTSAC 2 cut(s) 171, 343
TseI GCWGC 1 cut(s) 315
Tsp45I GTSAC 2 cut(s) 171, 343
TspDTI ATGAA 1 cut(s) 405
TspMI CCCGGG 1 cut(s) 310
TspRI CASTG 1 cut(s) 208
VpaK11BI GGWCC 2 cut(s) 260, 297
XapI RAATTY 1 cut(s) 130
XbaI TCTAGA 1 cut(s) 134
XmaI CCCGGG 1 cut(s) 310
XmnI GAANNNNTTC 1 cut(s) 157
XspI CTAG 2 cut(s) 135, 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.