Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004788

Physical Location & Seq

Genomic Coordinates Reverse (-)

1239324 .. 1242707

Gene Structure 3384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G026600.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCGGAAAATCCAAAGTTGGATTCGGCAGCCACTGAAGAGGTTTATGGATTAGAAGAAAAAATGGGTACCCAGAAAATCTCAGTTTCCGATCATATAAACGGCTTTCATTACACAGCAGATAAGTCTGACAGCTTTGTCATTGATATGGAAAGCTTCTCCCATGGCACCGATAAAGATATTACTCCAAATTCTAGAGTCTCGATGCAGAGAAATCTTTCTCGGAAATGGTCTCAGCGTGATGTGGAGAAGAAGATAAATTACAACGCCATTTCAACTGATAGAGATGTTTTGGCTGGGGGAGCATCTTCACCGTTAGCTGCTCTTGTAGGATCTAGCACGCCTAAGTCCCCACTGGCTATGGGGACCATAGATCATTCGAGCAACCCGCAAGTCCATCATCAAATCACCGTCACAGCAGCCAACATCGGCACCACCACCGATGGCAGATGTGTTGTTCGGAGAAATAGTTTCCGGCGCTCTTCATCTTGGGCCATCGACCCCAAGAGGGTTCTTTTCTTCTTTGCCACCATGTCAAGCATTGGAACAATCTTGTTGATATACTTCACCCTTTCAATTGCCAAGTACAACGCAGATGAAAACAGTCTAGATTGGCAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

22.87

Weight (kDa)

6.59

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21215 AT4G21215
fragaria_vesca	FvH4_3g02690 FvH4_3g02690 FvH4_3g02690
malus_domestica	MD05G1340800.v1.1 MD10G1314300.v1.1
prunus_persica	Prupe.4G026600_v2.0.a1 Prupe.4G026600_v2.0.a1 Prupe.4G026600_v2.0.a1 Prupe.4G026600_v2.0.a1 Prupe.4G026600_v2.0.a1 Prupe.4G026600_v2.0.a1
pyrus_communis	pycom05g31000 pycom10g26640
rosa_chinensis	RchiOBHm_Chr5g0004031
rosa_laevigata	RLG00000031197
rosa_roxburghii	Rroxscaffold_1G00071680 Rroxscaffold_1G00071950
rosa_rugosa	Rorug04G0409100 Rorug04G0409200 Rorug04G0409200 Rorug04G0409300 Rorug04G0409400 Rorug04G0409400 Rorug04G0409400
rosa_samantha	Rh5AG036800 Rh5BG035900 Rh5CG039500 Rh5DG035400
rosa_wichuraiana	Rw5G003340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	137
Acc65I	GGTACC	1 cut(s)	68
AccB1I	GGYRCC	3 cut(s)	68, 167, 431
AciI	CCGC	2 cut(s)	5, 389
AclWI	GGATC	1 cut(s)	340
AcsI	RAATTY	1 cut(s)	190
AcuI	CTGAAG	1 cut(s)	57
AfaI	GTAC	2 cut(s)	70, 587
AfiI	CCNNNNNNNGG	1 cut(s)	508
AgsI	TTSAA	2 cut(s)	276, 576
AjuI	GAANNNNNNNTTGG	2 cut(s)	7, 39
AluBI	AGCT	3 cut(s)	135, 156, 320
AluI	AGCT	3 cut(s)	135, 156, 320
Alw26I	GTCTC	2 cut(s)	205, 237
AlwI	GGATC	1 cut(s)	340
AlwNI	CAGNNNCTG	1 cut(s)	35
AoxI	GGCC	1 cut(s)	492
ApeKI	GCWGC	4 cut(s)	29, 320, 419, 616
ApoI	RAATTY	1 cut(s)	190
Asp700I	GAANNNNTTC	1 cut(s)	217
Asp718I	GGTACC	1 cut(s)	68
AspLEI	GCGC	1 cut(s)	480
AspS9I	GGNCC	2 cut(s)	366, 492
AsuHPI	GGTGA	3 cut(s)	303, 400, 559
AvaII	GGWCC	1 cut(s)	366
BanI	GGYRCC	3 cut(s)	68, 167, 431
BarI	GAAGNNNNNNTAC	2 cut(s)	245, 277
BbvI	GCAGC	3 cut(s)	41, 307, 431
BccI	CCATC	3 cut(s)	405, 437, 503
BceAI	ACGGC	1 cut(s)	118
BcoDI	GTCTC	2 cut(s)	205, 237
BfaI	CTAG	3 cut(s)	195, 336, 608
BfoI	RGCGCY	1 cut(s)	481
BisI	GCNGC	4 cut(s)	30, 321, 420, 617
BlsI	GCNGC	4 cut(s)	31, 322, 421, 618
Bme18I	GGWCC	1 cut(s)	366
BmgT120I	GGNCC	2 cut(s)	366, 492
BmiI	GGNNCC	4 cut(s)	70, 169, 367, 433
BmsI	GCATC	2 cut(s)	195, 314
BsaI	GGTCTC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	163
BsaXI	ACNNNNNCTCC	2 cut(s)	454, 484
Bsc4I	CCNNNNNNNGG	1 cut(s)	508
Bse1I	ACTGG	1 cut(s)	360
BseDI	CCNNGG	1 cut(s)	163
BseLI	CCNNNNNNNGG	1 cut(s)	508
BseMII	CTCAG	2 cut(s)	96, 248
BseNI	ACTGG	1 cut(s)	360
BseXI	GCAGC	3 cut(s)	41, 307, 431
BseYI	CCCAGC	1 cut(s)	296
BshFI	GGCC	1 cut(s)	494
BshNI	GGYRCC	3 cut(s)	68, 167, 431
BsiSI	CCGG	1 cut(s)	475
BslFI	GGGAC	2 cut(s)	334, 379
BslI	CCNNNNNNNGG	1 cut(s)	508
BsmAI	GTCTC	2 cut(s)	205, 237
BsmFI	GGGAC	2 cut(s)	334, 379
BsnI	GGCC	1 cut(s)	494
Bso31I	GGTCTC	1 cut(s)	237
Bsp143I	GATC	3 cut(s)	91, 332, 373
Bsp19I	CCATGG	1 cut(s)	163
BspACI	CCGC	2 cut(s)	5, 389
BspANI	GGCC	1 cut(s)	494
BspCNI	CTCAG	2 cut(s)	95, 247
BspLI	GGNNCC	4 cut(s)	70, 169, 367, 433
BspPI	GGATC	1 cut(s)	340
BspQI	GCTCTTC	1 cut(s)	487
BspT107I	GGYRCC	3 cut(s)	68, 167, 431
BspTNI	GGTCTC	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	360
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	3 cut(s)	91, 332, 373
BssT1I	CCWWGG	1 cut(s)	163
Bst4CI	ACNGT	3 cut(s)	315, 412, 605
Bst6I	CTCTTC	2 cut(s)	33, 487
BstC8I	GCNNGC	1 cut(s)	341
BstDEI	CTNAG	3 cut(s)	82, 234, 345
BstDSI	CCRYGG	1 cut(s)	163
BstH2I	RGCGCY	1 cut(s)	481
BstHHI	GCGC	1 cut(s)	480
BstKTI	GATC	3 cut(s)	94, 335, 376
BstMAI	GTCTC	2 cut(s)	205, 237
BstMBI	GATC	3 cut(s)	91, 332, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstV1I	GCAGC	3 cut(s)	41, 307, 431
BstX2I	RGATCY	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	332
BsuRI	GGCC	1 cut(s)	494
BtgI	CCRYGG	1 cut(s)	163
BtsIMutI	CAGTG	2 cut(s)	33, 353
Cac8I	GCNNGC	1 cut(s)	341
CaiI	CAGNNNCTG	1 cut(s)	35
CfoI	GCGC	1 cut(s)	480
Cfr13I	GGNCC	2 cut(s)	366, 492
Csp6I	GTAC	2 cut(s)	69, 586
CviAII	CATG	2 cut(s)	164, 532
CviJI	RGCY	9 cut(s)	32, 105, 135, 156, 296, 320, 359, 422, 494
CviKI_1	RGCY	9 cut(s)	32, 105, 135, 156, 296, 320, 359, 422, 494
CviQI	GTAC	2 cut(s)	69, 586
DdeI	CTNAG	3 cut(s)	82, 234, 345
DpnI	GATC	3 cut(s)	93, 334, 375
DpnII	GATC	3 cut(s)	91, 332, 373
DrdI	GACNNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	137
Eam1104I	CTCTTC	2 cut(s)	33, 487
EarI	CTCTTC	2 cut(s)	33, 487
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	163
Eco31I	GGTCTC	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	366
Eco57I	CTGAAG	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	163
FaeI	CATG	2 cut(s)	167, 535
FaiI	YATR	9 cut(s)	48, 96, 98, 149, 165, 362, 371, 533, 562
FaqI	GGGAC	2 cut(s)	334, 379
FatI	CATG	2 cut(s)	163, 531
FauI	CCCGC	1 cut(s)	396
Fnu4HI	GCNGC	4 cut(s)	30, 321, 420, 617
Fsp4HI	GCNGC	4 cut(s)	30, 321, 420, 617
FspBI	CTAG	3 cut(s)	195, 336, 608
GlaI	GCGC	1 cut(s)	479
GluI	GCNGC	4 cut(s)	30, 321, 420, 617
GsaI	CCCAGC	1 cut(s)	300
HaeII	RGCGCY	1 cut(s)	481
HaeIII	GGCC	1 cut(s)	494
HapII	CCGG	1 cut(s)	475
HhaI	GCGC	1 cut(s)	480
Hin1II	CATG	2 cut(s)	167, 535
Hin6I	GCGC	1 cut(s)	478
HinP1I	GCGC	1 cut(s)	478
HindIII	AAGCTT	1 cut(s)	154
HinfI	GANTC	2 cut(s)	23, 198
HpaII	CCGG	1 cut(s)	475
HphI	GGTGA	3 cut(s)	303, 400, 559
Hpy188I	TCNGA	4 cut(s)	91, 130, 225, 462
Hpy188III	TCNNGA	3 cut(s)	195, 202, 608
HpyCH4III	ACNGT	3 cut(s)	315, 412, 605
HpyCH4V	TGCA	1 cut(s)	208
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	3 cut(s)	82, 234, 345
Hsp92II	CATG	2 cut(s)	167, 535
HspAI	GCGC	1 cut(s)	478
KpnI	GGTACC	1 cut(s)	72
Kzo9I	GATC	3 cut(s)	91, 332, 373
LguI	GCTCTTC	1 cut(s)	487
LmnI	GCTCC	1 cut(s)	302
LpnPI	CCDG	4 cut(s)	86, 282, 341, 488
Lsp1109I	GCAGC	3 cut(s)	41, 307, 431
LweI	GCATC	2 cut(s)	195, 314
MaeI	CTAG	3 cut(s)	195, 336, 608
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	3 cut(s)	93, 334, 375
MboI	GATC	3 cut(s)	91, 332, 373
MboII	GAAGA	7 cut(s)	50, 68, 262, 265, 300, 474, 511
MfeI	CAATTG	1 cut(s)	576
MflI	RGATCY	1 cut(s)	332
MluCI	AATT	3 cut(s)	190, 259, 576
MlyI	GAGTC	1 cut(s)	207
MnlI	CCTC	2 cut(s)	34, 501
MroXI	GAANNNNTTC	1 cut(s)	217
MslI	CAYNNNNRTG	1 cut(s)	146
MspI	CCGG	1 cut(s)	475
MunI	CAATTG	1 cut(s)	576
MwoI	GCNNNNNNNGC	1 cut(s)	302
NcoI	CCATGG	1 cut(s)	163
NdeII	GATC	3 cut(s)	91, 332, 373
NlaIII	CATG	2 cut(s)	167, 535
NlaIV	GGNNCC	4 cut(s)	70, 169, 367, 433
NmuCI	GTSAC	1 cut(s)	412
PciSI	GCTCTTC	1 cut(s)	487
PdmI	GAANNNNTTC	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	23
PkrI	GCNGC	4 cut(s)	31, 322, 421, 618
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
PspFI	CCCAGC	1 cut(s)	296
PspN4I	GGNNCC	4 cut(s)	70, 169, 367, 433
PspPI	GGNCC	2 cut(s)	366, 492
PstNI	CAGNNNCTG	1 cut(s)	35
PsuI	RGATCY	1 cut(s)	332
RsaI	GTAC	2 cut(s)	70, 587
RsaNI	GTAC	2 cut(s)	69, 586
RseI	CAYNNNNRTG	1 cut(s)	146
SapI	GCTCTTC	1 cut(s)	487
SatI	GCNGC	4 cut(s)	30, 321, 420, 617
Sau3AI	GATC	3 cut(s)	91, 332, 373
Sau96I	GGNCC	2 cut(s)	366, 492
SchI	GAGTC	1 cut(s)	207
SetI	ASST	4 cut(s)	45, 137, 158, 322
SfaNI	GCATC	2 cut(s)	195, 314
SinI	GGWCC	1 cut(s)	366
SmiMI	CAYNNNNRTG	1 cut(s)	146
Sse9I	AATT	3 cut(s)	190, 259, 576
SsiI	CCGC	2 cut(s)	5, 389
SspMI	CTAG	3 cut(s)	195, 336, 608
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	3 cut(s)	315, 412, 605
TaqI	TCGA	3 cut(s)	203, 380, 498
TasI	AATT	3 cut(s)	190, 259, 576
TatI	WGTACW	1 cut(s)	585
TfiI	GAWTC	1 cut(s)	23
TscAI	CASTG	2 cut(s)	40, 360
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	4 cut(s)	29, 320, 419, 616
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	3 cut(s)	98, 474, 612
TspRI	CASTG	2 cut(s)	40, 360
VpaK11BI	GGWCC	1 cut(s)	366
XapI	RAATTY	1 cut(s)	190
XbaI	TCTAGA	2 cut(s)	194, 607
XmnI	GAANNNNTTC	1 cut(s)	217
XspI	CTAG	3 cut(s)	195, 336, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.