Rroxscaffold_1G00071950

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004788
Physical Location & Seq
Forward (+)
93097681 .. 93100748
3068 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00071950.1

Sequence Viewer

Length: 606 bp
ATGGCGGAAATTCCCAAGTTGGATTTGGCTTCCATTGATGAGCTTTATGGATTAGAAGAGAAAATGGGCACCCAGAAAATCTCAGTTTCGGATCATATAAATGGATTTCACTACACAGCTGATAAATCTGATAGCTTTGTGATTGACATGGAGAGTTTCAACCATGGCATCACAGATAAAGATGTAACTGCAAATTCTAGAATCTCGAGAAATCTTTCAAGGAAATGGTCACAGAGAGTTGGAGAGAAGAAGATAAGCACTGATGGTAATTCAAATGATAGAGATGTTTCAGGTTCAGCTATAACTTCACCCAAAGGTCCTATTACACCCGAAAAGCCAGCGGTGGTTGCAGGGACCGCAGATCACCCGGGCAGCCCACAAGTCCACCATCAGATTACCGTCACAGCGGCCAACATTGGCACCACCACCGATGGCAGATGCATTGCTAGGAGAAATAGTTTCCGGCGTTCTTCATCGTGGGCCGTTGATCCCAAGAGGGTTCTCTTCTTCTTTGCAACATTGTCAAGCATTGGTACAATCTTATTGATATACTTCACACTTACAATTGGCAAGTACAATATAGAGGAAAATAGTCTTGATTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.12

Weight (kDa)

6.59

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 68, 419
AciI CCGC 4 cut(s) 5, 341, 357, 407
AclWI GGATC 2 cut(s) 99, 482
AcoI YGGCCR 1 cut(s) 408
AcsI RAATTY 2 cut(s) 9, 193
AfaI GTAC 2 cut(s) 535, 575
AgsI TTSAA 3 cut(s) 160, 219, 273
AluBI AGCT 4 cut(s) 43, 119, 135, 299
AluI AGCT 4 cut(s) 43, 119, 135, 299
AlwI GGATC 2 cut(s) 99, 482
Ama87I CYCGRG 2 cut(s) 205, 367
AoxI GGCC 2 cut(s) 408, 480
ApeKI GCWGC 1 cut(s) 372
ApoI RAATTY 2 cut(s) 9, 193
Asp700I GAANNNNTTC 1 cut(s) 214
AspS9I GGNCC 3 cut(s) 317, 354, 480
AsuC2I CCSGG 2 cut(s) 368, 369
AsuHPI GGTGA 2 cut(s) 300, 356
AvaI CYCGRG 2 cut(s) 205, 367
AvaII GGWCC 2 cut(s) 317, 354
BaeGI GKGCMC 1 cut(s) 71
BanI GGYRCC 2 cut(s) 68, 419
BbvI GCAGC 1 cut(s) 384
BccI CCATC 3 cut(s) 257, 396, 425
BceAI ACGGC 1 cut(s) 467
BcnI CCSGG 2 cut(s) 368, 369
BfaI CTAG 2 cut(s) 198, 447
BisI GCNGC 2 cut(s) 373, 408
BlsI GCNGC 2 cut(s) 374, 409
Bme1390I CCNGG 2 cut(s) 368, 369
Bme18I GGWCC 2 cut(s) 317, 354
BmeT110I CYCGRG 2 cut(s) 205, 367
BmgT120I GGNCC 3 cut(s) 317, 354, 480
BmiI GGNNCC 3 cut(s) 70, 355, 421
BmrFI CCNGG 2 cut(s) 368, 369
BmsI GCATC 2 cut(s) 177, 428
BpuMI CCSGG 2 cut(s) 368, 369
BsaJI CCNNGG 2 cut(s) 163, 367
BsaXI ACNNNNNCTCC 2 cut(s) 442, 472
Bse3DI GCAATG 1 cut(s) 441
BseDI CCNNGG 2 cut(s) 163, 367
BseMI GCAATG 1 cut(s) 441
BseMII CTCAG 1 cut(s) 96
BseSI GKGCMC 1 cut(s) 71
BseXI GCAGC 1 cut(s) 384
BshFI GGCC 2 cut(s) 410, 482
BshNI GGYRCC 2 cut(s) 68, 419
BsiHKCI CYCGRG 2 cut(s) 205, 367
BsiSI CCGG 2 cut(s) 368, 463
BslFI GGGAC 1 cut(s) 367
BsmFI GGGAC 1 cut(s) 367
BsnI GGCC 2 cut(s) 410, 482
BsoBI CYCGRG 2 cut(s) 205, 367
Bsp1286I GDGCHC 1 cut(s) 71
Bsp143I GATC 3 cut(s) 91, 361, 487
Bsp19I CCATGG 1 cut(s) 163
BspACI CCGC 4 cut(s) 5, 341, 357, 407
BspANI GGCC 2 cut(s) 410, 482
BspCNI CTCAG 1 cut(s) 95
BspLI GGNNCC 3 cut(s) 70, 355, 421
BspPI GGATC 2 cut(s) 99, 482
BspT107I GGYRCC 2 cut(s) 68, 419
BsrDI GCAATG 1 cut(s) 441
BssECI CCNNGG 2 cut(s) 163, 367
BssMI GATC 3 cut(s) 91, 361, 487
BssT1I CCWWGG 1 cut(s) 163
Bst4CI ACNGT 1 cut(s) 400
Bst6I CTCTTC 2 cut(s) 51, 509
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 1 cut(s) 82
BstDSI CCRYGG 1 cut(s) 163
BstKTI GATC 3 cut(s) 94, 364, 490
BstMBI GATC 3 cut(s) 91, 361, 487
BstMWI GCNNNNNNNGC 2 cut(s) 347, 356
BstSCI CCNGG 2 cut(s) 366, 367
BstSLI GKGCMC 1 cut(s) 71
BstV1I GCAGC 1 cut(s) 384
BsuRI GGCC 2 cut(s) 410, 482
BtgI CCRYGG 1 cut(s) 163
BtsIMutI CAGTG 1 cut(s) 258
Cac8I GCNNGC 1 cut(s) 339
Cfr13I GGNCC 3 cut(s) 317, 354, 480
Cfr9I CCCGGG 1 cut(s) 367
Csp6I GTAC 2 cut(s) 534, 574
CviAII CATG 2 cut(s) 148, 164
CviJI RGCY 9 cut(s) 29, 43, 119, 135, 299, 337, 375, 410, 482
CviKI_1 RGCY 9 cut(s) 29, 43, 119, 135, 299, 337, 375, 410, 482
CviQI GTAC 2 cut(s) 534, 574
DdeI CTNAG 1 cut(s) 82
DpnI GATC 3 cut(s) 93, 363, 489
DpnII GATC 3 cut(s) 91, 361, 487
EaeI YGGCCR 1 cut(s) 408
Eam1104I CTCTTC 2 cut(s) 51, 509
EarI CTCTTC 2 cut(s) 51, 509
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 163
Eco47I GGWCC 2 cut(s) 317, 354
Eco88I CYCGRG 2 cut(s) 205, 367
EcoO109I RGGNCCY 1 cut(s) 317
EcoT14I CCWWGG 1 cut(s) 163
EcoT22I ATGCAT 1 cut(s) 443
ErhI CCWWGG 1 cut(s) 163
FaeI CATG 2 cut(s) 151, 167
FaiI YATR 8 cut(s) 48, 96, 98, 149, 165, 302, 550, 581
FaqI GGGAC 1 cut(s) 367
FatI CATG 2 cut(s) 147, 163
Fnu4HI GCNGC 2 cut(s) 373, 408
Fsp4HI GCNGC 2 cut(s) 373, 408
FspBI CTAG 2 cut(s) 198, 447
GluI GCNGC 2 cut(s) 373, 408
HaeIII GGCC 2 cut(s) 410, 482
HapII CCGG 2 cut(s) 368, 463
Hin1II CATG 2 cut(s) 151, 167
HinfI GANTC 1 cut(s) 201
HpaII CCGG 2 cut(s) 368, 463
HphI GGTGA 2 cut(s) 300, 356
Hpy166II GTNNAC 1 cut(s) 385
Hpy188I TCNGA 3 cut(s) 91, 130, 393
Hpy188III TCNNGA 4 cut(s) 198, 205, 207, 596
Hpy8I GTNNAC 1 cut(s) 385
HpyCH4III ACNGT 1 cut(s) 400
HpyCH4V TGCA 4 cut(s) 191, 350, 441, 515
HpyF10VI GCNNNNNNNGC 2 cut(s) 347, 356
HpyF3I CTNAG 1 cut(s) 82
Hsp92II CATG 2 cut(s) 151, 167
Kzo9I GATC 3 cut(s) 91, 361, 487
LpnPI CCDG 6 cut(s) 86, 276, 336, 351, 381, 476
Lsp1109I GCAGC 1 cut(s) 384
LweI GCATC 2 cut(s) 177, 428
MaeI CTAG 2 cut(s) 198, 447
MaeIII GTNAC 3 cut(s) 184, 228, 400
MalI GATC 3 cut(s) 93, 363, 489
MboI GATC 3 cut(s) 91, 361, 487
MboII GAAGA 6 cut(s) 68, 259, 262, 462, 496, 499
MfeI CAATTG 1 cut(s) 564
MhlI GDGCHC 1 cut(s) 71
MluCI AATT 4 cut(s) 9, 193, 268, 564
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 2 cut(s) 489, 577
Mph1103I ATGCAT 1 cut(s) 443
MroXI GAANNNNTTC 1 cut(s) 214
MslI CAYNNNNRTG 1 cut(s) 99
MspA1I CMGCKG 3 cut(s) 119, 341, 407
MspI CCGG 2 cut(s) 368, 463
MspR9I CCNGG 2 cut(s) 368, 369
MunI CAATTG 1 cut(s) 564
MwoI GCNNNNNNNGC 2 cut(s) 347, 356
NciI CCSGG 2 cut(s) 368, 369
NcoI CCATGG 1 cut(s) 163
NdeII GATC 3 cut(s) 91, 361, 487
NlaIII CATG 2 cut(s) 151, 167
NlaIV GGNNCC 3 cut(s) 70, 355, 421
NmuCI GTSAC 2 cut(s) 228, 400
NsiI ATGCAT 1 cut(s) 443
PaeR7I CTCGAG 1 cut(s) 205
PdmI GAANNNNTTC 1 cut(s) 214
PfeI GAWTC 1 cut(s) 201
PkrI GCNGC 2 cut(s) 374, 409
PpuMI RGGWCCY 1 cut(s) 317
Psp5II RGGWCCY 1 cut(s) 317
PspN4I GGNNCC 3 cut(s) 70, 355, 421
PspPI GGNCC 3 cut(s) 317, 354, 480
PspPPI RGGWCCY 1 cut(s) 317
PvuII CAGCTG 1 cut(s) 119
RsaI GTAC 2 cut(s) 535, 575
RsaNI GTAC 2 cut(s) 534, 574
RseI CAYNNNNRTG 1 cut(s) 99
SatI GCNGC 2 cut(s) 373, 408
Sau3AI GATC 3 cut(s) 91, 361, 487
Sau96I GGNCC 3 cut(s) 317, 354, 480
ScrFI CCNGG 2 cut(s) 368, 369
SduI GDGCHC 1 cut(s) 71
SetI ASST 6 cut(s) 45, 121, 137, 295, 301, 319
SfaNI GCATC 2 cut(s) 177, 428
Sfr274I CTCGAG 1 cut(s) 205
SinI GGWCC 2 cut(s) 317, 354
SlaI CTCGAG 1 cut(s) 205
SmaI CCCGGG 1 cut(s) 369
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 205
SmoI CTYRAG 1 cut(s) 205
Sse9I AATT 4 cut(s) 9, 193, 268, 564
SsiI CCGC 4 cut(s) 5, 341, 357, 407
SspMI CTAG 2 cut(s) 198, 447
StyD4I CCNGG 2 cut(s) 366, 367
StyI CCWWGG 1 cut(s) 163
TaaI ACNGT 1 cut(s) 400
TaqI TCGA 1 cut(s) 206
TasI AATT 4 cut(s) 9, 193, 268, 564
TatI WGTACW 1 cut(s) 573
TauI GCSGC 1 cut(s) 410
TfiI GAWTC 1 cut(s) 201
TscAI CASTG 1 cut(s) 265
TseFI GTSAC 2 cut(s) 228, 400
TseI GCWGC 1 cut(s) 372
Tsp45I GTSAC 2 cut(s) 228, 400
TspDTI ATGAA 1 cut(s) 462
TspMI CCCGGG 1 cut(s) 367
TspRI CASTG 1 cut(s) 265
VpaK11BI GGWCC 2 cut(s) 317, 354
XapI RAATTY 2 cut(s) 9, 193
XbaI TCTAGA 1 cut(s) 197
XcmI CCANNNNNNNNNTGG 1 cut(s) 22
XhoI CTCGAG 1 cut(s) 205
XmaI CCCGGG 1 cut(s) 367
XmnI GAANNNNTTC 1 cut(s) 214
XspI CTAG 2 cut(s) 198, 447
Zsp2I ATGCAT 1 cut(s) 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.