Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0004788

Physical Location & Seq

Genomic Coordinates Forward (+)

46124184 .. 46127590

Gene Structure 3407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1340800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGCGGAAAATCCGAAGTTGGATTCGGGTTCTGAGGAGGTTTATGGATTAGAAGAGAAAATGAGCACCCAGAAAATATCGGTTTCAGATCATATAAACGGGTTTCACTACACCGCCGATAAATCTGACAGCTTCGTCATCGACATGGAAAGCTTCTCCCATGGCGGCACCGATAAAGATGTCACTGCAAATTCTAGAGTCTCGAGAAACGTTTCCCGGAAATGGTCTCAGAGAGGTGGGGAGAAGAAGATAATCCGAAACGTCAATTCAAATGACAAAGAAGTTTCATCTACAACAACTTCACATTTCGGGTCTAGCACGCCTGAAAAGTCCCCACTAGCTGTTGGGACCATAGATCAATCGAGCAACCCACACGTTCATCATCAGATCACAGTCACTGCAGCCAACATTGGCACCACCACCGAAGGGAGGTGCGTTGTCCGGAGGAATAGTTTCCGGCGCTCTTCCTCCTGGGGCATTGATCCCAAGAGGGTTCTCTTCTTCTTTGCCACCATGTCAAGCATTGGAACAATCTTACTCATATACTTCACCCTTTCTATTGCCAAGTACAATGCAGATGAAACCAGTATTGACTGGCAGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

202

Amino Acids

22.29

Weight (kDa)

7.07

Isoelectric Point (pI)

48.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21215 AT4G21215
fragaria_vesca	FvH4_3g02690 FvH4_3g02690 FvH4_3g02690
malus_domestica	MD05G1340800.v1.1 MD10G1314300.v1.1
prunus_persica	Prupe.4G026600_v2.0.a1 Prupe.4G026600_v2.0.a1 Prupe.4G026600_v2.0.a1 Prupe.4G026600_v2.0.a1 Prupe.4G026600_v2.0.a1 Prupe.4G026600_v2.0.a1
pyrus_communis	pycom05g31000 pycom10g26640
rosa_chinensis	RchiOBHm_Chr5g0004031
rosa_laevigata	RLG00000031197
rosa_roxburghii	Rroxscaffold_1G00071680 Rroxscaffold_1G00071950
rosa_rugosa	Rorug04G0409100 Rorug04G0409200 Rorug04G0409200 Rorug04G0409300 Rorug04G0409400 Rorug04G0409400 Rorug04G0409400
rosa_samantha	Rh5AG036800 Rh5BG035900 Rh5CG039500 Rh5DG035400
rosa_wichuraiana	Rw5G003340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	134
AccB1I	GGYRCC	2 cut(s)	167, 413
AccIII	TCCGGA	1 cut(s)	441
AciI	CCGC	3 cut(s)	5, 114, 165
AclI	AACGTT	1 cut(s)	210
AclWI	GGATC	1 cut(s)	476
AcsI	RAATTY	1 cut(s)	190
AfaI	GTAC	1 cut(s)	569
AfiI	CCNNNNNNNGG	3 cut(s)	222, 426, 429
AflIII	ACRYGT	1 cut(s)	373
AgsI	TTSAA	1 cut(s)	270
AjnI	CCWGG	1 cut(s)	470
AluBI	AGCT	3 cut(s)	132, 153, 341
AluI	AGCT	3 cut(s)	132, 153, 341
Alw21I	GWGCWC	1 cut(s)	68
Alw26I	GTCTC	2 cut(s)	205, 231
AlwI	GGATC	1 cut(s)	476
AlwNI	CAGNNNCTG	1 cut(s)	398
Ama87I	CYCGRG	1 cut(s)	202
Aor13HI	TCCGGA	1 cut(s)	441
ApeKI	GCWGC	2 cut(s)	401, 598
ApoI	RAATTY	1 cut(s)	190
Asp700I	GAANNNNTTC	2 cut(s)	211, 452
AspLEI	GCGC	1 cut(s)	462
AspS9I	GGNCC	1 cut(s)	348
AsuC2I	CCSGG	1 cut(s)	217
AsuHPI	GGTGA	1 cut(s)	541
AvaI	CYCGRG	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	348
BanI	GGYRCC	2 cut(s)	167, 413
Bbv12I	GWGCWC	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	413
BciT130I	CCWGG	1 cut(s)	472
BcnI	CCSGG	1 cut(s)	217
BcoDI	GTCTC	2 cut(s)	205, 231
BfaI	CTAG	3 cut(s)	195, 315, 338
BfmI	CTRYAG	1 cut(s)	399
BfoI	RGCGCY	1 cut(s)	463
BisI	GCNGC	3 cut(s)	166, 402, 599
BlsI	GCNGC	3 cut(s)	167, 403, 600
Bme1390I	CCNGG	2 cut(s)	217, 472
Bme18I	GGWCC	1 cut(s)	348
BmeT110I	CYCGRG	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	348
BmiI	GGNNCC	3 cut(s)	169, 349, 415
BmrFI	CCNGG	2 cut(s)	217, 472
BpuMI	CCSGG	1 cut(s)	217
BsaI	GGTCTC	1 cut(s)	231
BsaJI	CCNNGG	2 cut(s)	160, 471
BsaWI	WCCGGW	1 cut(s)	441
BsaXI	ACNNNNNCTCC	2 cut(s)	436, 466
Bsc4I	CCNNNNNNNGG	3 cut(s)	222, 426, 429
Bse1I	ACTGG	2 cut(s)	585, 599
BseAI	TCCGGA	1 cut(s)	441
BseBI	CCWGG	1 cut(s)	472
BseDI	CCNNGG	2 cut(s)	160, 471
BseLI	CCNNNNNNNGG	3 cut(s)	222, 426, 429
BseMII	CTCAG	2 cut(s)	24, 242
BseNI	ACTGG	2 cut(s)	585, 599
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	413
BshNI	GGYRCC	2 cut(s)	167, 413
BsiHKAI	GWGCWC	1 cut(s)	68
BsiHKCI	CYCGRG	1 cut(s)	202
BsiSI	CCGG	3 cut(s)	217, 442, 457
BslFI	GGGAC	2 cut(s)	316, 361
BslI	CCNNNNNNNGG	3 cut(s)	222, 426, 429
BsmAI	GTCTC	2 cut(s)	205, 231
BsmFI	GGGAC	2 cut(s)	316, 361
Bso31I	GGTCTC	1 cut(s)	231
BsoBI	CYCGRG	1 cut(s)	202
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp13I	TCCGGA	1 cut(s)	441
Bsp143I	GATC	4 cut(s)	88, 355, 387, 481
Bsp19I	CCATGG	1 cut(s)	160
BspACI	CCGC	3 cut(s)	5, 114, 165
BspCNI	CTCAG	2 cut(s)	25, 241
BspEI	TCCGGA	1 cut(s)	441
BspLI	GGNNCC	3 cut(s)	169, 349, 415
BspMAI	CTGCAG	1 cut(s)	403
BspPI	GGATC	1 cut(s)	476
BspQI	GCTCTTC	1 cut(s)	469
BspT107I	GGYRCC	2 cut(s)	167, 413
BspTNI	GGTCTC	1 cut(s)	231
BsrI	ACTGG	2 cut(s)	585, 599
BssECI	CCNNGG	2 cut(s)	160, 471
BssMI	GATC	4 cut(s)	88, 355, 387, 481
BssT1I	CCWWGG	1 cut(s)	160
Bst2UI	CCWGG	1 cut(s)	472
Bst4CI	ACNGT	1 cut(s)	394
Bst6I	CTCTTC	3 cut(s)	48, 469, 503
BstC8I	GCNNGC	1 cut(s)	320
BstDEI	CTNAG	2 cut(s)	33, 228
BstDSI	CCRYGG	1 cut(s)	160
BstH2I	RGCGCY	1 cut(s)	463
BstHHI	GCGC	1 cut(s)	462
BstKTI	GATC	4 cut(s)	91, 358, 390, 484
BstMAI	GTCTC	2 cut(s)	205, 231
BstMBI	GATC	4 cut(s)	88, 355, 387, 481
BstNI	CCWGG	1 cut(s)	472
BstSCI	CCNGG	2 cut(s)	215, 470
BstSFI	CTRYAG	1 cut(s)	399
BstV1I	GCAGC	1 cut(s)	413
BtgI	CCRYGG	1 cut(s)	160
BtsI	GCAGTG	2 cut(s)	183, 396
BtsIMutI	CAGTG	2 cut(s)	183, 396
Cac8I	GCNNGC	1 cut(s)	320
CaiI	CAGNNNCTG	1 cut(s)	398
CfoI	GCGC	1 cut(s)	462
Cfr13I	GGNCC	1 cut(s)	348
Csp6I	GTAC	1 cut(s)	568
CviAII	CATG	3 cut(s)	145, 161, 514
CviJI	RGCY	4 cut(s)	132, 153, 341, 404
CviKI_1	RGCY	4 cut(s)	132, 153, 341, 404
CviQI	GTAC	1 cut(s)	568
DdeI	CTNAG	2 cut(s)	33, 228
DpnI	GATC	4 cut(s)	90, 357, 389, 483
DpnII	GATC	4 cut(s)	88, 355, 387, 481
DrdI	GACNNNNNNGTC	1 cut(s)	134
DseDI	GACNNNNNNGTC	1 cut(s)	134
Eam1104I	CTCTTC	3 cut(s)	48, 469, 503
EarI	CTCTTC	3 cut(s)	48, 469, 503
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	160
Eco31I	GGTCTC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	348
Eco88I	CYCGRG	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	470
EcoT14I	CCWWGG	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	160
FaeI	CATG	3 cut(s)	148, 164, 517
FaiI	YATR	9 cut(s)	45, 93, 95, 146, 162, 353, 515, 542, 544
FaqI	GGGAC	2 cut(s)	316, 361
FatI	CATG	3 cut(s)	144, 160, 513
Fnu4HI	GCNGC	3 cut(s)	166, 402, 599
Fsp4HI	GCNGC	3 cut(s)	166, 402, 599
FspBI	CTAG	3 cut(s)	195, 315, 338
GlaI	GCGC	1 cut(s)	461
GluI	GCNGC	3 cut(s)	166, 402, 599
HaeII	RGCGCY	1 cut(s)	463
HapII	CCGG	3 cut(s)	217, 442, 457
HhaI	GCGC	1 cut(s)	462
Hin1II	CATG	3 cut(s)	148, 164, 517
Hin6I	GCGC	1 cut(s)	460
HinP1I	GCGC	1 cut(s)	460
HindIII	AAGCTT	1 cut(s)	151
HinfI	GANTC	2 cut(s)	23, 198
HpaII	CCGG	3 cut(s)	217, 442, 457
HphI	GGTGA	1 cut(s)	541
Hpy188I	TCNGA	7 cut(s)	15, 34, 88, 127, 231, 257, 387
Hpy188III	TCNNGA	4 cut(s)	195, 202, 204, 442
HpyAV	CCTTC	1 cut(s)	419
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4IV	ACGT	3 cut(s)	210, 261, 375
HpyCH4V	TGCA	3 cut(s)	188, 401, 575
HpyF3I	CTNAG	2 cut(s)	33, 228
HpySE526I	ACGT	3 cut(s)	210, 261, 375
Hsp92II	CATG	3 cut(s)	148, 164, 517
HspAI	GCGC	1 cut(s)	460
Kpn2I	TCCGGA	1 cut(s)	441
Kzo9I	GATC	4 cut(s)	88, 355, 387, 481
LguI	GCTCTTC	1 cut(s)	469
LpnPI	CCDG	9 cut(s)	83, 230, 336, 455, 457, 470, 484, 580, 598
Lsp1109I	GCAGC	1 cut(s)	413
MaeI	CTAG	3 cut(s)	195, 315, 338
MaeII	ACGT	3 cut(s)	210, 261, 375
MaeIII	GTNAC	2 cut(s)	181, 394
MalI	GATC	4 cut(s)	90, 357, 389, 483
MboI	GATC	4 cut(s)	88, 355, 387, 481
MboII	GAAGA	6 cut(s)	65, 256, 259, 456, 490, 493
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	2 cut(s)	190, 265
MlyI	GAGTC	1 cut(s)	207
MnlI	CCTC	7 cut(s)	28, 31, 227, 423, 438, 478, 483
MroI	TCCGGA	1 cut(s)	441
MroXI	GAANNNNTTC	2 cut(s)	211, 452
MslI	CAYNNNNRTG	1 cut(s)	143
MspI	CCGG	3 cut(s)	217, 442, 457
MspR9I	CCNGG	2 cut(s)	217, 472
MvaI	CCWGG	1 cut(s)	472
NciI	CCSGG	1 cut(s)	217
NcoI	CCATGG	1 cut(s)	160
NdeII	GATC	4 cut(s)	88, 355, 387, 481
NlaIII	CATG	3 cut(s)	148, 164, 517
NlaIV	GGNNCC	3 cut(s)	169, 349, 415
NmuCI	GTSAC	2 cut(s)	181, 394
PaeR7I	CTCGAG	1 cut(s)	202
PciSI	GCTCTTC	1 cut(s)	469
PdmI	GAANNNNTTC	2 cut(s)	211, 452
PfeI	GAWTC	1 cut(s)	23
PfoI	TCCNGGA	1 cut(s)	215
PkrI	GCNGC	3 cut(s)	167, 403, 600
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
Psp1406I	AACGTT	1 cut(s)	210
Psp6I	CCWGG	1 cut(s)	470
PspGI	CCWGG	1 cut(s)	470
PspN4I	GGNNCC	3 cut(s)	169, 349, 415
PspPI	GGNCC	1 cut(s)	348
PstI	CTGCAG	1 cut(s)	403
PstNI	CAGNNNCTG	1 cut(s)	398
RsaI	GTAC	1 cut(s)	569
RsaNI	GTAC	1 cut(s)	568
RseI	CAYNNNNRTG	1 cut(s)	143
SapI	GCTCTTC	1 cut(s)	469
SatI	GCNGC	3 cut(s)	166, 402, 599
Sau3AI	GATC	4 cut(s)	88, 355, 387, 481
Sau96I	GGNCC	1 cut(s)	348
SchI	GAGTC	1 cut(s)	207
ScrFI	CCNGG	2 cut(s)	217, 472
SduI	GDGCHC	1 cut(s)	68
SetI	ASST	9 cut(s)	42, 134, 155, 213, 238, 264, 343, 378, 434
SfcI	CTRYAG	1 cut(s)	399
Sfr274I	CTCGAG	1 cut(s)	202
SinI	GGWCC	1 cut(s)	348
SlaI	CTCGAG	1 cut(s)	202
SmiMI	CAYNNNNRTG	1 cut(s)	143
SmlI	CTYRAG	1 cut(s)	202
SmoI	CTYRAG	1 cut(s)	202
Sse9I	AATT	2 cut(s)	190, 265
SsiI	CCGC	3 cut(s)	5, 114, 165
SspMI	CTAG	3 cut(s)	195, 315, 338
StyD4I	CCNGG	2 cut(s)	215, 470
StyI	CCWWGG	1 cut(s)	160
TaaI	ACNGT	1 cut(s)	394
TaiI	ACGT	3 cut(s)	213, 264, 378
TaqI	TCGA	3 cut(s)	141, 203, 362
TasI	AATT	2 cut(s)	190, 265
TatI	WGTACW	1 cut(s)	567
TauI	GCSGC	1 cut(s)	168
TfiI	GAWTC	1 cut(s)	23
TscAI	CASTG	2 cut(s)	190, 403
TseFI	GTSAC	2 cut(s)	181, 394
TseI	GCWGC	2 cut(s)	401, 598
Tsp45I	GTSAC	2 cut(s)	181, 394
TspDTI	ATGAA	3 cut(s)	276, 368, 594
TspRI	CASTG	2 cut(s)	190, 403
VpaK11BI	GGWCC	1 cut(s)	348
XapI	RAATTY	1 cut(s)	190
XbaI	TCTAGA	1 cut(s)	194
XhoI	CTCGAG	1 cut(s)	202
XmnI	GAANNNNTTC	2 cut(s)	211, 452
XspI	CTAG	3 cut(s)	195, 315, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.