Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005442

Physical Location & Seq

Genomic Coordinates Forward (+)

11542430 .. 11544657

Gene Structure 2228 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G21720.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGATACCGCAGCAATGGACGCCGCCGTGTGGGAGCAAATGCACGAATAAGTACTCAGCATTTACGCAGCTTCCATGGAGAGTATTCTGCAAAAAGGGATGTGATGCCGATAGTGACTCATGGGAAGATTGTGTAGGAGACTGCAGTGAAATTTGCTACAAAGATCCTGTGCTAAAAGACAGACCATGGACTGCTGTTATAGATCGTTCTCCTGGAGATGCCAAATACTCTGAGGAATGCTTTCACGCATGTGTAGCAGGCTGTGGTTACAAGTTTGATGTTGAAGCTGAGATAGTCAATAAGGTGAAACCAAAGAGACCTCCACCACCACCGCCAAAGCCACAACCACCACCACCACCACCACGTTCTCAAAAACCAATGCAGCCTCCTACTGAGGATGTTCTTGCAACTTCCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

15.44

Weight (kDa)

6.55

Isoelectric Point (pI)

66.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21720 AT4G21720 AT4G21720
fragaria_vesca	FvH4_3g09420 FvH4_5g20990
malus_domestica	MD05G1314200.v1.1 MD10G1295500.v1.1
prunus_persica	Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1
pyrus_communis	pycom05g29220 pycom10g24820
rosa_chinensis	RchiOBHm_Chr5g0008131
rosa_laevigata	RLG00000031538
rosa_multiflora	Rmu_sc0036405.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068360
rosa_rugosa	Rorug04G0433400
rosa_samantha	Rh5AG061700 Rh5BG058400 Rh5CG068600 Rh5DG057700
rosa_wichuraiana	Rw5G005890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	8, 23, 332, 414
AclWI	GGATC	1 cut(s)	158
AcsI	RAATTY	1 cut(s)	150
AcyI	GRCGYC	1 cut(s)	20
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	1 cut(s)	284
AjnI	CCWGG	1 cut(s)	211
AleI	CACNNNNGTG	1 cut(s)	249
AluBI	AGCT	2 cut(s)	70, 287
AluI	AGCT	2 cut(s)	70, 287
Alw26I	GTCTC	2 cut(s)	132, 310
AlwI	GGATC	1 cut(s)	158
ApeKI	GCWGC	3 cut(s)	10, 67, 382
ApoI	RAATTY	1 cut(s)	150
Asp700I	GAANNNNTTC	1 cut(s)	240
AsuHPI	GGTGA	1 cut(s)	316
BbvI	GCAGC	3 cut(s)	22, 79, 394
BceAI	ACGGC	1 cut(s)	10
BciT130I	CCWGG	1 cut(s)	213
BcoDI	GTCTC	2 cut(s)	132, 310
BfmI	CTRYAG	1 cut(s)	142
BisI	GCNGC	4 cut(s)	11, 23, 68, 383
BlsI	GCNGC	4 cut(s)	12, 24, 69, 384
BmcAI	AGTACT	1 cut(s)	53
Bme1390I	CCNGG	1 cut(s)	213
BmrFI	CCNGG	1 cut(s)	213
BmsI	GCATC	2 cut(s)	94, 208
BpmI	CTGGAG	1 cut(s)	234
BsaHI	GRCGYC	1 cut(s)	20
BsaI	GGTCTC	1 cut(s)	310
BsaJI	CCNNGG	2 cut(s)	74, 185
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse3DI	GCAATG	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	213
BseDI	CCNNGG	2 cut(s)	74, 185
BseGI	GGATG	2 cut(s)	104, 403
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMI	GCAATG	1 cut(s)	20
BseMII	CTCAG	4 cut(s)	69, 222, 279, 384
BseXI	GCAGC	3 cut(s)	22, 79, 394
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	2 cut(s)	132, 310
BsmI	GAATGC	1 cut(s)	242
Bso31I	GGTCTC	1 cut(s)	310
Bsp143I	GATC	2 cut(s)	163, 202
Bsp19I	CCATGG	2 cut(s)	74, 185
BspACI	CCGC	4 cut(s)	8, 23, 332, 414
BspCNI	CTCAG	4 cut(s)	68, 223, 280, 385
BspMAI	CTGCAG	1 cut(s)	146
BspPI	GGATC	1 cut(s)	158
BspTNI	GGTCTC	1 cut(s)	310
BsrDI	GCAATG	1 cut(s)	20
BssECI	CCNNGG	2 cut(s)	74, 185
BssMI	GATC	2 cut(s)	163, 202
BssNI	GRCGYC	1 cut(s)	20
BssT1I	CCWWGG	2 cut(s)	74, 185
Bst2UI	CCWGG	1 cut(s)	213
BstACI	GRCGYC	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	259
BstDEI	CTNAG	4 cut(s)	55, 231, 288, 393
BstDSI	CCRYGG	2 cut(s)	74, 185
BstF5I	GGATG	2 cut(s)	104, 403
BstKTI	GATC	2 cut(s)	166, 205
BstMAI	GTCTC	2 cut(s)	132, 310
BstMBI	GATC	2 cut(s)	163, 202
BstMWI	GCNNNNNNNGC	3 cut(s)	19, 254, 413
BstNI	CCWGG	1 cut(s)	213
BstNSI	RCATGY	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	211
BstSFI	CTRYAG	1 cut(s)	142
BstV1I	GCAGC	3 cut(s)	22, 79, 394
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BtgI	CCRYGG	2 cut(s)	74, 185
BtsCI	GGATG	2 cut(s)	104, 403
BtsI	GCAGTG	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	151
Cac8I	GCNNGC	1 cut(s)	259
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	52
CviAII	CATG	4 cut(s)	75, 120, 186, 249
CviJI	RGCY	5 cut(s)	70, 261, 287, 340, 385
CviKI_1	RGCY	5 cut(s)	70, 261, 287, 340, 385
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	4 cut(s)	55, 231, 288, 393
DpnI	GATC	2 cut(s)	165, 204
DpnII	GATC	2 cut(s)	163, 202
Eco130I	CCWWGG	2 cut(s)	74, 185
Eco31I	GGTCTC	1 cut(s)	310
EcoRII	CCWGG	1 cut(s)	211
EcoT14I	CCWWGG	2 cut(s)	74, 185
ErhI	CCWWGG	2 cut(s)	74, 185
FaeI	CATG	4 cut(s)	78, 123, 189, 252
FaiI	YATR	5 cut(s)	76, 121, 187, 200, 250
FatI	CATG	4 cut(s)	74, 119, 185, 248
Fnu4HI	GCNGC	4 cut(s)	11, 23, 68, 383
FokI	GGATG	2 cut(s)	111, 410
Fsp4HI	GCNGC	4 cut(s)	11, 23, 68, 383
GluI	GCNGC	4 cut(s)	11, 23, 68, 383
GsuI	CTGGAG	1 cut(s)	234
HgaI	GACGC	1 cut(s)	28
Hin1I	GRCGYC	1 cut(s)	20
Hin1II	CATG	4 cut(s)	78, 123, 189, 252
HinfI	GANTC	1 cut(s)	116
HphI	GGTGA	1 cut(s)	316
Hpy188I	TCNGA	1 cut(s)	232
HpyCH4IV	ACGT	1 cut(s)	364
HpyCH4V	TGCA	5 cut(s)	42, 90, 144, 382, 407
HpyF10VI	GCNNNNNNNGC	3 cut(s)	19, 254, 413
HpyF3I	CTNAG	4 cut(s)	55, 231, 288, 393
HpySE526I	ACGT	1 cut(s)	364
Hsp92I	GRCGYC	1 cut(s)	20
Hsp92II	CATG	4 cut(s)	78, 123, 189, 252
Kzo9I	GATC	2 cut(s)	163, 202
LmnI	GCTCC	1 cut(s)	33
LpnPI	CCDG	4 cut(s)	180, 198, 225, 243
Lsp1109I	GCAGC	3 cut(s)	22, 79, 394
LweI	GCATC	2 cut(s)	94, 208
MaeII	ACGT	1 cut(s)	364
MaeIII	GTNAC	2 cut(s)	113, 266
MalI	GATC	2 cut(s)	165, 204
MboI	GATC	2 cut(s)	163, 202
MboII	GAAGA	1 cut(s)	137
MflI	RGATCY	1 cut(s)	163
MluCI	AATT	1 cut(s)	150
MlyI	GAGTC	1 cut(s)	110
MnlI	CCTC	4 cut(s)	226, 330, 388, 396
MroXI	GAANNNNTTC	1 cut(s)	240
MslI	CAYNNNNRTG	1 cut(s)	249
MspR9I	CCNGG	1 cut(s)	213
Mva1269I	GAATGC	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	3 cut(s)	19, 254, 413
NcoI	CCATGG	2 cut(s)	74, 185
NdeII	GATC	2 cut(s)	163, 202
NlaIII	CATG	4 cut(s)	78, 123, 189, 252
NmuCI	GTSAC	1 cut(s)	113
NspI	RCATGY	1 cut(s)	252
OliI	CACNNNNGTG	1 cut(s)	249
PctI	GAATGC	1 cut(s)	242
PdmI	GAANNNNTTC	1 cut(s)	240
PfoI	TCCNGGA	1 cut(s)	211
PkrI	GCNGC	4 cut(s)	12, 24, 69, 384
PleI	GAGTC	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	211
PstI	CTGCAG	1 cut(s)	146
PsuI	RGATCY	1 cut(s)	163
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	249
SatI	GCNGC	4 cut(s)	11, 23, 68, 383
Sau3AI	GATC	2 cut(s)	163, 202
ScaI	AGTACT	1 cut(s)	53
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	1 cut(s)	213
SetI	ASST	5 cut(s)	72, 289, 306, 322, 367
SfaNI	GCATC	2 cut(s)	94, 208
SfcI	CTRYAG	1 cut(s)	142
SmiMI	CAYNNNNRTG	1 cut(s)	249
Sse9I	AATT	1 cut(s)	150
SsiI	CCGC	4 cut(s)	8, 23, 332, 414
StyD4I	CCNGG	1 cut(s)	211
StyI	CCWWGG	2 cut(s)	74, 185
TaiI	ACGT	1 cut(s)	367
TasI	AATT	1 cut(s)	150
TatI	WGTACW	1 cut(s)	51
TauI	GCSGC	1 cut(s)	25
TscAI	CASTG	1 cut(s)	151
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	3 cut(s)	10, 67, 382
Tsp45I	GTSAC	1 cut(s)	113
TspRI	CASTG	1 cut(s)	151
XapI	RAATTY	1 cut(s)	150
XceI	RCATGY	1 cut(s)	252
XmnI	GAANNNNTTC	1 cut(s)	240
ZrmI	AGTACT	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.