Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005442

Physical Location & Seq

Genomic Coordinates Forward (+)

5494397 .. 5496666

Gene Structure 2270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g09420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGATACGGCATCAATGGGGTCCTCCCTGCAATAATGAATGCACGCACAAGTACTCCGCCCTTATGCAGATTCCATGGCGAGTCTTTTGCAAAAAAGGATGCGATGCTGATGGAGAGACATGGGAAGAATGCTTGGAGGAGTGCAATGAGATATGTTACAAGGATCCTGTCTTGAAGGATCAACAATGGAGTGCTTGCATTGACCGTTCTCCTGGAGTTGAAAGGTACTCAGAGGAGTGCTTTCACGCTTGTGTATCTGGCTGTGGTTACAAGTTTGACAAACCTCCAGACATAGCTGATAAAGTTCGCCCAAACAGGCCACCGAAGCCTCCCCCTGTACCAAAGCCAGCCTCACCACTTGTTGAATCTAAAGCAACGGCTGAAGACATACTTGGGACTTCCGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

15.2

Weight (kDa)

5.39

Isoelectric Point (pI)

66.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21720 AT4G21720 AT4G21720
fragaria_vesca	FvH4_3g09420 FvH4_5g20990
malus_domestica	MD05G1314200.v1.1 MD10G1295500.v1.1
prunus_persica	Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1
pyrus_communis	pycom05g29220 pycom10g24820
rosa_chinensis	RchiOBHm_Chr5g0008131
rosa_laevigata	RLG00000031538
rosa_multiflora	Rmu_sc0036405.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068360
rosa_rugosa	Rorug04G0433400
rosa_samantha	Rh5AG061700 Rh5BG058400 Rh5CG068600 Rh5DG057700
rosa_wichuraiana	Rw5G005890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	57, 402
AclWI	GGATC	3 cut(s)	158, 171, 186
AcuI	CTGAAG	1 cut(s)	402
AfaI	GTAC	3 cut(s)	53, 227, 339
AgsI	TTSAA	3 cut(s)	175, 221, 365
AjnI	CCWGG	1 cut(s)	211
AjuI	GAANNNNNNNTTGG	2 cut(s)	375, 407
AleI	CACNNNNGTG	1 cut(s)	249
AluBI	AGCT	1 cut(s)	296
AluI	AGCT	1 cut(s)	296
Alw26I	GTCTC	1 cut(s)	110
AlwI	GGATC	3 cut(s)	158, 171, 186
AoxI	GGCC	1 cut(s)	317
AspS9I	GGNCC	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	345
AvaII	GGWCC	1 cut(s)	20
BamHI	GGATCC	1 cut(s)	163
BbsI	GAAGAC	1 cut(s)	390
BccI	CCATC	1 cut(s)	104
BceAI	ACGGC	2 cut(s)	23, 393
BcgI	CGANNNNNNTGC	2 cut(s)	69, 103
BciT130I	CCWGG	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	110
BmcAI	AGTACT	1 cut(s)	53
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	1 cut(s)	20
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	2 cut(s)	21, 165
BmrFI	CCNGG	1 cut(s)	213
BmsI	GCATC	3 cut(s)	19, 89, 94
BpiI	GAAGAC	1 cut(s)	390
BpmI	CTGGAG	2 cut(s)	234, 270
BsaJI	CCNNGG	1 cut(s)	74
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bse3DI	GCAATG	1 cut(s)	151
BseBI	CCWGG	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	74
BseGI	GGATG	1 cut(s)	104
BseMI	GCAATG	1 cut(s)	151
BseMII	CTCAG	1 cut(s)	243
BseRI	GAGGAG	2 cut(s)	152, 248
BshFI	GGCC	1 cut(s)	319
BsmAI	GTCTC	1 cut(s)	110
BsmI	GAATGC	2 cut(s)	44, 134
BsnI	GGCC	1 cut(s)	319
Bsp143I	GATC	2 cut(s)	163, 178
Bsp19I	CCATGG	1 cut(s)	74
BspACI	CCGC	2 cut(s)	57, 402
BspANI	GGCC	1 cut(s)	319
BspCNI	CTCAG	1 cut(s)	242
BspLI	GGNNCC	2 cut(s)	21, 165
BspPI	GGATC	3 cut(s)	158, 171, 186
BsrDI	GCAATG	1 cut(s)	151
BssECI	CCNNGG	1 cut(s)	74
BssMI	GATC	2 cut(s)	163, 178
BssT1I	CCWWGG	1 cut(s)	74
Bst2UI	CCWGG	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	206
BstC8I	GCNNGC	3 cut(s)	44, 196, 348
BstDEI	CTNAG	1 cut(s)	229
BstDSI	CCRYGG	1 cut(s)	74
BstF5I	GGATG	1 cut(s)	104
BstKTI	GATC	2 cut(s)	166, 181
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	2 cut(s)	163, 178
BstMWI	GCNNNNNNNGC	1 cut(s)	325
BstNI	CCWGG	1 cut(s)	213
BstSCI	CCNGG	1 cut(s)	211
BstV2I	GAAGAC	1 cut(s)	390
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	319
BtgI	CCRYGG	1 cut(s)	74
BtgZI	GCGATG	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	104
Cac8I	GCNNGC	3 cut(s)	44, 196, 348
Cfr13I	GGNCC	1 cut(s)	20
Csp6I	GTAC	3 cut(s)	52, 226, 338
CviAII	CATG	2 cut(s)	75, 120
CviJI	RGCY	7 cut(s)	261, 296, 319, 328, 346, 350, 380
CviKI_1	RGCY	7 cut(s)	261, 296, 319, 328, 346, 350, 380
CviQI	GTAC	3 cut(s)	52, 226, 338
DdeI	CTNAG	1 cut(s)	229
DpnI	GATC	2 cut(s)	165, 180
DpnII	GATC	2 cut(s)	163, 178
EciI	GGCGGA	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	402
EcoO109I	RGGNCCY	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	74
ErhI	CCWWGG	1 cut(s)	74
FaeI	CATG	2 cut(s)	78, 123
FaiI	YATR	7 cut(s)	65, 76, 121, 154, 293, 389, 406
FalI	AAGNNNNNCTT	2 cut(s)	375, 407
FatI	CATG	2 cut(s)	74, 119
FokI	GGATG	1 cut(s)	111
GsuI	CTGGAG	2 cut(s)	234, 270
HaeIII	GGCC	1 cut(s)	319
Hin1II	CATG	2 cut(s)	78, 123
HinfI	GANTC	3 cut(s)	70, 81, 365
HphI	GGTGA	1 cut(s)	345
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	2 cut(s)	172, 287
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4V	TGCA	6 cut(s)	30, 42, 67, 90, 144, 198
HpyF10VI	GCNNNNNNNGC	1 cut(s)	325
HpyF3I	CTNAG	1 cut(s)	229
Hsp92II	CATG	2 cut(s)	78, 123
Kzo9I	GATC	2 cut(s)	163, 178
LpnPI	CCDG	9 cut(s)	40, 180, 198, 225, 243, 300, 301, 348, 360
LweI	GCATC	3 cut(s)	19, 89, 94
MaeIII	GTNAC	2 cut(s)	155, 266
MalI	GATC	2 cut(s)	165, 180
MboI	GATC	2 cut(s)	163, 178
MboII	GAAGA	2 cut(s)	137, 395
MflI	RGATCY	1 cut(s)	163
MlyI	GAGTC	1 cut(s)	90
MnlI	CCTC	6 cut(s)	33, 130, 226, 294, 339, 361
MslI	CAYNNNNRTG	1 cut(s)	249
MspR9I	CCNGG	1 cut(s)	213
Mva1269I	GAATGC	2 cut(s)	44, 134
MvaI	CCWGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	325
NcoI	CCATGG	1 cut(s)	74
NdeII	GATC	2 cut(s)	163, 178
NlaIII	CATG	2 cut(s)	78, 123
NlaIV	GGNNCC	2 cut(s)	21, 165
OliI	CACNNNNGTG	1 cut(s)	249
PctI	GAATGC	2 cut(s)	44, 134
PfeI	GAWTC	2 cut(s)	70, 365
PfoI	TCCNGGA	1 cut(s)	211
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
PpuMI	RGGWCCY	1 cut(s)	20
Psp5II	RGGWCCY	1 cut(s)	20
Psp6I	CCWGG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	211
PspN4I	GGNNCC	2 cut(s)	21, 165
PspPI	GGNCC	1 cut(s)	20
PspPPI	RGGWCCY	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	163
RsaI	GTAC	3 cut(s)	53, 227, 339
RsaNI	GTAC	3 cut(s)	52, 226, 338
RseI	CAYNNNNRTG	1 cut(s)	249
Sau3AI	GATC	2 cut(s)	163, 178
Sau96I	GGNCC	1 cut(s)	20
ScaI	AGTACT	1 cut(s)	53
SchI	GAGTC	1 cut(s)	90
ScrFI	CCNGG	1 cut(s)	213
SetI	ASST	3 cut(s)	227, 286, 298
SfaNI	GCATC	3 cut(s)	19, 89, 94
SinI	GGWCC	1 cut(s)	20
SmiMI	CAYNNNNRTG	1 cut(s)	249
SsiI	CCGC	2 cut(s)	57, 402
StyD4I	CCNGG	1 cut(s)	211
StyI	CCWWGG	1 cut(s)	74
TaaI	ACNGT	1 cut(s)	206
TatI	WGTACW	1 cut(s)	51
TfiI	GAWTC	2 cut(s)	70, 365
TspDTI	ATGAA	1 cut(s)	51
VpaK11BI	GGWCC	1 cut(s)	20
ZrmI	AGTACT	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.