Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005442

Physical Location & Seq

Genomic Coordinates Forward (+)

89576343 .. 89578668

Gene Structure 2326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00068360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGATACCGCAGCAATGGGGTCCTCCCTGCAATCACGAATGCACGCACAAGTACGCAGCCCTTATGCAGATTCCATGGCGAGTATTTTGCAAGAAAGGGTGTGACACTGATGGAGAGACTTGGGAAGAATGCTTGGAGGAGTGCAATGAGATATGTTACAAGGATCCTGTCTTAAAGGATCAACAATGGAGTGCTTGCATTGACCGTTCTCCTGGAGTTGAAAGGTACTCAGAGTTTGACAAACCTCCAGACATAGCTGATAAAGTTCGCCCAAACAGGCCACCTAAGCCTCCCCCTGTACCAAAGCCAGCCTCACCAATTGTTGAATCCAAAGCAACCGCTGAAGACATACTTGGGACTTCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

122

Amino Acids

13.78

Weight (kDa)

5.02

Isoelectric Point (pI)

66.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21720 AT4G21720 AT4G21720
fragaria_vesca	FvH4_3g09420 FvH4_5g20990
malus_domestica	MD05G1314200.v1.1 MD10G1295500.v1.1
prunus_persica	Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1
pyrus_communis	pycom05g29220 pycom10g24820
rosa_chinensis	RchiOBHm_Chr5g0008131
rosa_laevigata	RLG00000031538
rosa_multiflora	Rmu_sc0036405.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068360
rosa_rugosa	Rorug04G0433400
rosa_samantha	Rh5AG061700 Rh5BG058400 Rh5CG068600 Rh5DG057700
rosa_wichuraiana	Rw5G005890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	8, 339
AclWI	GGATC	3 cut(s)	158, 171, 186
AcuI	CTGAAG	1 cut(s)	363
AfaI	GTAC	3 cut(s)	53, 227, 300
AgsI	TTSAA	2 cut(s)	221, 326
AjnI	CCWGG	1 cut(s)	211
AjuI	GAANNNNNNNTTGG	2 cut(s)	336, 368
AluBI	AGCT	1 cut(s)	257
AluI	AGCT	1 cut(s)	257
Alw26I	GTCTC	1 cut(s)	110
AlwI	GGATC	3 cut(s)	158, 171, 186
AoxI	GGCC	1 cut(s)	278
ApeKI	GCWGC	2 cut(s)	10, 56
AspS9I	GGNCC	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	306
AvaII	GGWCC	1 cut(s)	20
BamHI	GGATCC	1 cut(s)	163
BbsI	GAAGAC	1 cut(s)	351
BbvI	GCAGC	2 cut(s)	22, 68
BccI	CCATC	1 cut(s)	104
BcgI	CGANNNNNNTGC	2 cut(s)	69, 103
BciT130I	CCWGG	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	110
BisI	GCNGC	2 cut(s)	11, 57
BlsI	GCNGC	2 cut(s)	12, 58
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	1 cut(s)	20
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	2 cut(s)	21, 165
BmrFI	CCNGG	1 cut(s)	213
BpiI	GAAGAC	1 cut(s)	351
BpmI	CTGGAG	2 cut(s)	231, 234
Bpu10I	CCTNAGC	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	74
Bse3DI	GCAATG	2 cut(s)	20, 151
BseBI	CCWGG	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	74
BseMI	GCAATG	2 cut(s)	20, 151
BseMII	CTCAG	1 cut(s)	243
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	2 cut(s)	22, 68
BshFI	GGCC	1 cut(s)	280
BsmAI	GTCTC	1 cut(s)	110
BsmI	GAATGC	2 cut(s)	44, 134
BsnI	GGCC	1 cut(s)	280
Bsp143I	GATC	2 cut(s)	163, 178
Bsp19I	CCATGG	1 cut(s)	74
BspACI	CCGC	2 cut(s)	8, 339
BspANI	GGCC	1 cut(s)	280
BspCNI	CTCAG	1 cut(s)	242
BspLI	GGNNCC	2 cut(s)	21, 165
BspPI	GGATC	3 cut(s)	158, 171, 186
BsrDI	GCAATG	2 cut(s)	20, 151
BssECI	CCNNGG	1 cut(s)	74
BssMI	GATC	2 cut(s)	163, 178
BssT1I	CCWWGG	1 cut(s)	74
Bst2UI	CCWGG	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	206
BstC8I	GCNNGC	3 cut(s)	44, 196, 309
BstDEI	CTNAG	2 cut(s)	229, 285
BstDSI	CCRYGG	1 cut(s)	74
BstKTI	GATC	2 cut(s)	166, 181
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	2 cut(s)	163, 178
BstMWI	GCNNNNNNNGC	1 cut(s)	286
BstNI	CCWGG	1 cut(s)	213
BstSCI	CCNGG	1 cut(s)	211
BstV1I	GCAGC	2 cut(s)	22, 68
BstV2I	GAAGAC	1 cut(s)	351
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	280
BtgI	CCRYGG	1 cut(s)	74
BtsIMutI	CAGTG	1 cut(s)	105
Cac8I	GCNNGC	3 cut(s)	44, 196, 309
Cfr13I	GGNCC	1 cut(s)	20
Csp6I	GTAC	3 cut(s)	52, 226, 299
CviAII	CATG	1 cut(s)	75
CviJI	RGCY	6 cut(s)	59, 257, 280, 289, 307, 311
CviKI_1	RGCY	6 cut(s)	59, 257, 280, 289, 307, 311
CviQI	GTAC	3 cut(s)	52, 226, 299
DdeI	CTNAG	2 cut(s)	229, 285
DpnI	GATC	2 cut(s)	165, 180
DpnII	GATC	2 cut(s)	163, 178
Eco130I	CCWWGG	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	363
EcoO109I	RGGNCCY	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	74
ErhI	CCWWGG	1 cut(s)	74
FaeI	CATG	1 cut(s)	78
FaiI	YATR	6 cut(s)	65, 76, 154, 254, 350, 367
FalI	AAGNNNNNCTT	2 cut(s)	336, 368
FatI	CATG	1 cut(s)	74
Fnu4HI	GCNGC	2 cut(s)	11, 57
Fsp4HI	GCNGC	2 cut(s)	11, 57
GluI	GCNGC	2 cut(s)	11, 57
GsuI	CTGGAG	2 cut(s)	231, 234
HaeIII	GGCC	1 cut(s)	280
Hin1II	CATG	1 cut(s)	78
HinfI	GANTC	2 cut(s)	70, 326
HphI	GGTGA	1 cut(s)	306
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	2 cut(s)	35, 248
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4V	TGCA	7 cut(s)	30, 42, 67, 90, 144, 198, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	286
HpyF3I	CTNAG	2 cut(s)	229, 285
Hsp92II	CATG	1 cut(s)	78
Kzo9I	GATC	2 cut(s)	163, 178
LpnPI	CCDG	8 cut(s)	40, 180, 198, 225, 261, 262, 309, 321
Lsp1109I	GCAGC	2 cut(s)	22, 68
MaeIII	GTNAC	2 cut(s)	101, 155
MalI	GATC	2 cut(s)	165, 180
MboI	GATC	2 cut(s)	163, 178
MboII	GAAGA	2 cut(s)	137, 356
MfeI	CAATTG	1 cut(s)	318
MflI	RGATCY	1 cut(s)	163
MluCI	AATT	1 cut(s)	318
MnlI	CCTC	5 cut(s)	33, 130, 255, 300, 322
MseI	TTAA	1 cut(s)	173
MspA1I	CMGCKG	1 cut(s)	341
MspR9I	CCNGG	1 cut(s)	213
MunI	CAATTG	1 cut(s)	318
Mva1269I	GAATGC	2 cut(s)	44, 134
MvaI	CCWGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	286
NcoI	CCATGG	1 cut(s)	74
NdeII	GATC	2 cut(s)	163, 178
NlaIII	CATG	1 cut(s)	78
NlaIV	GGNNCC	2 cut(s)	21, 165
NmuCI	GTSAC	1 cut(s)	101
PctI	GAATGC	2 cut(s)	44, 134
PfeI	GAWTC	2 cut(s)	70, 326
PfoI	TCCNGGA	1 cut(s)	211
PkrI	GCNGC	2 cut(s)	12, 58
PpuMI	RGGWCCY	1 cut(s)	20
Psp5II	RGGWCCY	1 cut(s)	20
Psp6I	CCWGG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	211
PspN4I	GGNNCC	2 cut(s)	21, 165
PspPI	GGNCC	1 cut(s)	20
PspPPI	RGGWCCY	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	163
RsaI	GTAC	3 cut(s)	53, 227, 300
RsaNI	GTAC	3 cut(s)	52, 226, 299
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	2 cut(s)	11, 57
Sau3AI	GATC	2 cut(s)	163, 178
Sau96I	GGNCC	1 cut(s)	20
ScrFI	CCNGG	1 cut(s)	213
SetI	ASST	4 cut(s)	227, 247, 259, 286
SinI	GGWCC	1 cut(s)	20
Sse9I	AATT	1 cut(s)	318
SsiI	CCGC	2 cut(s)	8, 339
StyD4I	CCNGG	1 cut(s)	211
StyI	CCWWGG	1 cut(s)	74
TaaI	ACNGT	1 cut(s)	206
TasI	AATT	1 cut(s)	318
TfiI	GAWTC	2 cut(s)	70, 326
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	2 cut(s)	10, 56
Tsp45I	GTSAC	1 cut(s)	101
TspRI	CASTG	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.