Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0005442

Physical Location & Seq

Genomic Coordinates Forward (+)

44441357 .. 44443684

Gene Structure 2328 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1314200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGACACCGCATCAATGGGGGTCTCCGTGCGGCCACCAATGCACGCACAAGTACGCAGCTCTTATGCAGATTCCATGGCGAGTATTTTGCAAAAAGGGGTGCGATACAGATGGAGAGACTTGGGAAGAATGCTTGGAGGAGTGCAATGAGATATGCTATAAGGATCCTGTCTTAAAGGACCAGCAATGGAGTGCTTGCATTGACCGTTCTCCCGGAGTTGACAGATACTCAGAGGAGTGTTTTCATGCTTGTGTATCTGGTTGCGGCTTCAAGTTTGATAAAAATCCAGACATAGCTGATAAAGTTCGTCCAAACAGGCCGCCTAAGCCTCCCCCTGTTGAAAAGCCACCCGCCCACCCTGCTGAACCCACGGCAACGACCGACGACATACTTAGCACTTCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

15.15

Weight (kDa)

5.29

Isoelectric Point (pI)

57.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21720 AT4G21720 AT4G21720
fragaria_vesca	FvH4_3g09420 FvH4_5g20990
malus_domestica	MD05G1314200.v1.1 MD10G1295500.v1.1
prunus_persica	Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1
pyrus_communis	pycom05g29220 pycom10g24820
rosa_chinensis	RchiOBHm_Chr5g0008131
rosa_laevigata	RLG00000031538
rosa_multiflora	Rmu_sc0036405.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068360
rosa_rugosa	Rorug04G0433400
rosa_samantha	Rh5AG061700 Rh5BG058400 Rh5CG068600 Rh5DG057700
rosa_wichuraiana	Rw5G005890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	8, 30, 264, 320, 351
AclWI	GGATC	2 cut(s)	158, 171
AcoI	YGGCCR	1 cut(s)	31
AfaI	GTAC	1 cut(s)	53
AgsI	TTSAA	2 cut(s)	271, 341
AluBI	AGCT	2 cut(s)	59, 296
AluI	AGCT	2 cut(s)	59, 296
Alw26I	GTCTC	2 cut(s)	27, 110
AlwI	GGATC	2 cut(s)	158, 171
AoxI	GGCC	2 cut(s)	31, 317
ApeKI	GCWGC	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	178
AsuC2I	CCSGG	1 cut(s)	213
AvaII	GGWCC	1 cut(s)	178
BamHI	GGATCC	1 cut(s)	163
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	1 cut(s)	104
BceAI	ACGGC	1 cut(s)	387
BcgI	CGANNNNNNTGC	2 cut(s)	69, 103
BcnI	CCSGG	1 cut(s)	213
BcoDI	GTCTC	2 cut(s)	27, 110
BisI	GCNGC	4 cut(s)	31, 57, 265, 320
BlsI	GCNGC	4 cut(s)	32, 58, 266, 321
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	1 cut(s)	165
BmrFI	CCNGG	1 cut(s)	213
BmsI	GCATC	1 cut(s)	19
Bpu10I	CCTNAGC	1 cut(s)	324
BpuMI	CCSGG	1 cut(s)	213
BsaBI	GATNNNNATC	1 cut(s)	282
BsaI	GGTCTC	1 cut(s)	27
BsaJI	CCNNGG	2 cut(s)	74, 369
Bse3DI	GCAATG	2 cut(s)	151, 191
Bse8I	GATNNNNATC	1 cut(s)	282
BseDI	CCNNGG	2 cut(s)	74, 369
BseJI	GATNNNNATC	1 cut(s)	282
BseMI	GCAATG	2 cut(s)	151, 191
BseMII	CTCAG	1 cut(s)	243
BseRI	GAGGAG	2 cut(s)	152, 248
BseXI	GCAGC	1 cut(s)	68
Bsh1285I	CGRYCG	1 cut(s)	381
BshFI	GGCC	2 cut(s)	33, 319
BsiEI	CGRYCG	1 cut(s)	381
BsiSI	CCGG	1 cut(s)	213
BsmAI	GTCTC	2 cut(s)	27, 110
BsmI	GAATGC	1 cut(s)	134
BsnI	GGCC	2 cut(s)	33, 319
Bso31I	GGTCTC	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	163
Bsp19I	CCATGG	1 cut(s)	74
BspACI	CCGC	5 cut(s)	8, 30, 264, 320, 351
BspANI	GGCC	2 cut(s)	33, 319
BspCNI	CTCAG	1 cut(s)	242
BspLI	GGNNCC	1 cut(s)	165
BspPI	GGATC	2 cut(s)	158, 171
BspTNI	GGTCTC	1 cut(s)	27
BsrDI	GCAATG	2 cut(s)	151, 191
BssECI	CCNNGG	2 cut(s)	74, 369
BssMI	GATC	1 cut(s)	163
BssT1I	CCWWGG	1 cut(s)	74
Bst4CI	ACNGT	1 cut(s)	206
BstC8I	GCNNGC	2 cut(s)	44, 196
BstDEI	CTNAG	3 cut(s)	229, 324, 392
BstDSI	CCRYGG	2 cut(s)	74, 369
BstKTI	GATC	1 cut(s)	166
BstMAI	GTCTC	2 cut(s)	27, 110
BstMBI	GATC	1 cut(s)	163
BstMCI	CGRYCG	1 cut(s)	381
BstMWI	GCNNNNNNNGC	3 cut(s)	39, 325, 359
BstSCI	CCNGG	1 cut(s)	211
BstV1I	GCAGC	1 cut(s)	68
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BsuRI	GGCC	2 cut(s)	33, 319
BtgI	CCRYGG	2 cut(s)	74, 369
Cac8I	GCNNGC	2 cut(s)	44, 196
Cfr13I	GGNCC	1 cut(s)	178
Csp6I	GTAC	1 cut(s)	52
CviAII	CATG	2 cut(s)	75, 245
CviJI	RGCY	7 cut(s)	33, 59, 267, 296, 319, 328, 346
CviKI_1	RGCY	7 cut(s)	33, 59, 267, 296, 319, 328, 346
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	3 cut(s)	229, 324, 392
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
EaeI	YGGCCR	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	74
Eco31I	GGTCTC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	74
ErhI	CCWWGG	1 cut(s)	74
FaeI	CATG	2 cut(s)	78, 248
FaiI	YATR	8 cut(s)	65, 76, 154, 159, 246, 293, 389, 406
FatI	CATG	2 cut(s)	74, 244
FauI	CCCGC	1 cut(s)	358
Fnu4HI	GCNGC	4 cut(s)	31, 57, 265, 320
Fsp4HI	GCNGC	4 cut(s)	31, 57, 265, 320
GluI	GCNGC	4 cut(s)	31, 57, 265, 320
HaeIII	GGCC	2 cut(s)	33, 319
HapII	CCGG	1 cut(s)	213
Hin1II	CATG	2 cut(s)	78, 248
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	1 cut(s)	70
HpaII	CCGG	1 cut(s)	213
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	1 cut(s)	287
Hpy8I	GTNNAC	1 cut(s)	220
Hpy99I	CGWCG	1 cut(s)	386
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4V	TGCA	6 cut(s)	42, 67, 90, 144, 198, 404
HpyF10VI	GCNNNNNNNGC	3 cut(s)	39, 325, 359
HpyF3I	CTNAG	3 cut(s)	229, 324, 392
Hsp92II	CATG	2 cut(s)	78, 248
Kzo9I	GATC	1 cut(s)	163
LpnPI	CCDG	8 cut(s)	180, 194, 226, 243, 300, 301, 348, 372
Lsp1109I	GCAGC	1 cut(s)	68
LweI	GCATC	1 cut(s)	19
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MboII	GAAGA	1 cut(s)	137
MflI	RGATCY	1 cut(s)	163
MnlI	CCTC	3 cut(s)	130, 226, 339
MseI	TTAA	1 cut(s)	173
MslI	CAYNNNNRTG	1 cut(s)	249
MspI	CCGG	1 cut(s)	213
MspR9I	CCNGG	1 cut(s)	213
Mva1269I	GAATGC	1 cut(s)	134
MwoI	GCNNNNNNNGC	3 cut(s)	39, 325, 359
NciI	CCSGG	1 cut(s)	213
NcoI	CCATGG	1 cut(s)	74
NdeII	GATC	1 cut(s)	163
NlaIII	CATG	2 cut(s)	78, 248
NlaIV	GGNNCC	1 cut(s)	165
PctI	GAATGC	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	70
PfoI	TCCNGGA	1 cut(s)	211
PkrI	GCNGC	4 cut(s)	32, 58, 266, 321
PspN4I	GGNNCC	1 cut(s)	165
PspPI	GGNCC	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	163
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	4 cut(s)	31, 57, 265, 320
Sau3AI	GATC	1 cut(s)	163
Sau96I	GGNCC	1 cut(s)	178
ScrFI	CCNGG	1 cut(s)	213
SetI	ASST	2 cut(s)	61, 298
SfaNI	GCATC	1 cut(s)	19
SinI	GGWCC	1 cut(s)	178
SmiMI	CAYNNNNRTG	1 cut(s)	249
SsiI	CCGC	5 cut(s)	8, 30, 264, 320, 351
StyD4I	CCNGG	1 cut(s)	211
StyI	CCWWGG	1 cut(s)	74
TaaI	ACNGT	1 cut(s)	206
TaqII	GACCGA	1 cut(s)	395
TauI	GCSGC	3 cut(s)	33, 267, 322
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TseI	GCWGC	1 cut(s)	56
TspDTI	ATGAA	1 cut(s)	233
TspGWI	ACGGA	1 cut(s)	15
VpaK11BI	GGWCC	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.