Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005442

Physical Location & Seq

Genomic Coordinates Reverse (-)

2153768 .. 2156307

Gene Structure 2540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G044900.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGATACCGCATCAATGGGGGTCTCCGTGCGGTAACCAATGCACCAACAAGTACGCAGCCCTTATGCAGATTCCATGGCGAGTATTTTGCAAAAAGGGCTGTGACGCTGATGGAGAAACTTGGGAAGAATGCTTGGAGGAGTGCAATGAGATATGCTACAAGGATCCTGTTTTAAAGGACCGGCAATGGAGTGCTTGCATCGACCGTTCTCCTGGAGTTGACAGGTACTCAGAGGAGTGCTTTCATGCTTGTGTATCTGGCTGTGGTTACAAGTTTGATATTCGTCCGGACATAGCTGATAAAGTTCGTCCAAACAGGCGACCTAAGCCTCCTCCCCCTGTTCAAGAGCCAGCCTCACCGCCTGCTGAATCCAGAGCAGCCGGAGCAACGACTGAAGACATACTTAGCACTTCAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

15.52

Weight (kDa)

5.21

Isoelectric Point (pI)

71.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21720 AT4G21720 AT4G21720
fragaria_vesca	FvH4_3g09420 FvH4_5g20990
malus_domestica	MD05G1314200.v1.1 MD10G1295500.v1.1
prunus_persica	Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1
pyrus_communis	pycom05g29220 pycom10g24820
rosa_chinensis	RchiOBHm_Chr5g0008131
rosa_laevigata	RLG00000031538
rosa_multiflora	Rmu_sc0036405.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068360
rosa_rugosa	Rorug04G0433400
rosa_samantha	Rh5AG061700 Rh5BG058400 Rh5CG068600 Rh5DG057700
rosa_wichuraiana	Rw5G005890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	286
AciI	CCGC	3 cut(s)	8, 30, 359
AclWI	GGATC	2 cut(s)	158, 171
AcuI	CTGAAG	2 cut(s)	396, 414
AfaI	GTAC	2 cut(s)	53, 227
AgsI	TTSAA	1 cut(s)	344
AjnI	CCWGG	1 cut(s)	211
AluBI	AGCT	1 cut(s)	296
AluI	AGCT	1 cut(s)	296
Alw26I	GTCTC	1 cut(s)	27
AlwI	GGATC	2 cut(s)	158, 171
Aor13HI	TCCGGA	1 cut(s)	286
ApeKI	GCWGC	2 cut(s)	56, 377
AspS9I	GGNCC	1 cut(s)	178
AsuHPI	GGTGA	1 cut(s)	348
AvaII	GGWCC	1 cut(s)	178
BamHI	GGATCC	1 cut(s)	163
BbsI	GAAGAC	1 cut(s)	402
BbvI	GCAGC	2 cut(s)	68, 389
BccI	CCATC	1 cut(s)	104
BcgI	CGANNNNNNTGC	2 cut(s)	69, 103
BciT130I	CCWGG	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	27
BisI	GCNGC	2 cut(s)	57, 378
BlsI	GCNGC	2 cut(s)	58, 379
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	1 cut(s)	165
BmrFI	CCNGG	1 cut(s)	213
BmsI	GCATC	2 cut(s)	19, 207
BpiI	GAAGAC	1 cut(s)	402
BplI	GAGNNNNNCTC	2 cut(s)	338, 370
BpmI	CTGGAG	1 cut(s)	234
Bpu10I	CCTNAGC	1 cut(s)	324
BsaI	GGTCTC	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	74
BsaWI	WCCGGW	1 cut(s)	286
Bse118I	RCCGGY	1 cut(s)	180
Bse3DI	GCAATG	2 cut(s)	151, 191
BseAI	TCCGGA	1 cut(s)	286
BseBI	CCWGG	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	74
BseMI	GCAATG	2 cut(s)	151, 191
BseMII	CTCAG	1 cut(s)	243
BseRI	GAGGAG	3 cut(s)	152, 248, 321
BseXI	GCAGC	2 cut(s)	68, 389
Bsh1285I	CGRYCG	1 cut(s)	205
BsiEI	CGRYCG	1 cut(s)	205
BsiSI	CCGG	3 cut(s)	181, 287, 381
BsmAI	GTCTC	1 cut(s)	27
BsmI	GAATGC	1 cut(s)	134
Bso31I	GGTCTC	1 cut(s)	27
Bsp13I	TCCGGA	1 cut(s)	286
Bsp143I	GATC	1 cut(s)	163
Bsp19I	CCATGG	1 cut(s)	74
BspACI	CCGC	3 cut(s)	8, 30, 359
BspCNI	CTCAG	1 cut(s)	242
BspEI	TCCGGA	1 cut(s)	286
BspLI	GGNNCC	1 cut(s)	165
BspPI	GGATC	2 cut(s)	158, 171
BspTNI	GGTCTC	1 cut(s)	27
BsrDI	GCAATG	2 cut(s)	151, 191
BsrFI	RCCGGY	1 cut(s)	180
BssAI	RCCGGY	1 cut(s)	180
BssECI	CCNNGG	1 cut(s)	74
BssMI	GATC	1 cut(s)	163
BssT1I	CCWWGG	1 cut(s)	74
Bst2UI	CCWGG	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	206
BstC8I	GCNNGC	3 cut(s)	196, 351, 363
BstDEI	CTNAG	3 cut(s)	229, 324, 404
BstDSI	CCRYGG	1 cut(s)	74
BstEII	GGTNACC	1 cut(s)	32
BstKTI	GATC	1 cut(s)	166
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	1 cut(s)	163
BstMCI	CGRYCG	1 cut(s)	205
BstMWI	GCNNNNNNNGC	3 cut(s)	96, 325, 383
BstNI	CCWGG	1 cut(s)	213
BstPI	GGTNACC	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	211
BstV1I	GCAGC	2 cut(s)	68, 389
BstV2I	GAAGAC	1 cut(s)	402
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BtgI	CCRYGG	1 cut(s)	74
Cac8I	GCNNGC	3 cut(s)	196, 351, 363
Cfr10I	RCCGGY	1 cut(s)	180
Cfr13I	GGNCC	1 cut(s)	178
CseI	GACGC	1 cut(s)	113
Csp6I	GTAC	2 cut(s)	52, 226
CviAII	CATG	2 cut(s)	75, 245
CviJI	RGCY	8 cut(s)	59, 99, 261, 296, 328, 349, 353, 380
CviKI_1	RGCY	8 cut(s)	59, 99, 261, 296, 328, 349, 353, 380
CviQI	GTAC	2 cut(s)	52, 226
DdeI	CTNAG	3 cut(s)	229, 324, 404
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
DraI	TTTAAA	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	74
Eco31I	GGTCTC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	178
Eco57I	CTGAAG	2 cut(s)	396, 414
Eco91I	GGTNACC	1 cut(s)	32
EcoO65I	GGTNACC	1 cut(s)	32
EcoRII	CCWGG	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	74
ErhI	CCWWGG	1 cut(s)	74
FaeI	CATG	2 cut(s)	78, 248
FaiI	YATR	7 cut(s)	65, 76, 154, 246, 293, 401, 418
FalI	AAGNNNNNCTT	2 cut(s)	387, 419
FatI	CATG	2 cut(s)	74, 244
Fnu4HI	GCNGC	2 cut(s)	57, 378
Fsp4HI	GCNGC	2 cut(s)	57, 378
GluI	GCNGC	2 cut(s)	57, 378
GsuI	CTGGAG	1 cut(s)	234
HapII	CCGG	3 cut(s)	181, 287, 381
HgaI	GACGC	1 cut(s)	113
Hin1II	CATG	2 cut(s)	78, 248
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	2 cut(s)	70, 368
HpaII	CCGG	3 cut(s)	181, 287, 381
HphI	GGTGA	1 cut(s)	348
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	3 cut(s)	287, 344, 372
Hpy8I	GTNNAC	1 cut(s)	220
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4V	TGCA	5 cut(s)	42, 67, 90, 144, 198
HpyF10VI	GCNNNNNNNGC	3 cut(s)	96, 325, 383
HpyF3I	CTNAG	3 cut(s)	229, 324, 404
Hsp92II	CATG	2 cut(s)	78, 248
Kpn2I	TCCGGA	1 cut(s)	286
Kzo9I	GATC	1 cut(s)	163
LmnI	GCTCC	1 cut(s)	383
Lsp1109I	GCAGC	2 cut(s)	68, 389
LweI	GCATC	2 cut(s)	19, 207
MaeIII	GTNAC	3 cut(s)	32, 101, 266
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MboII	GAAGA	2 cut(s)	137, 407
MflI	RGATCY	1 cut(s)	163
MnlI	CCTC	5 cut(s)	130, 226, 339, 342, 364
MroI	TCCGGA	1 cut(s)	286
MseI	TTAA	1 cut(s)	173
MslI	CAYNNNNRTG	1 cut(s)	249
MspI	CCGG	3 cut(s)	181, 287, 381
MspR9I	CCNGG	1 cut(s)	213
Mva1269I	GAATGC	1 cut(s)	134
MvaI	CCWGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	3 cut(s)	96, 325, 383
NcoI	CCATGG	1 cut(s)	74
NdeII	GATC	1 cut(s)	163
NlaIII	CATG	2 cut(s)	78, 248
NlaIV	GGNNCC	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	101
PctI	GAATGC	1 cut(s)	134
PfeI	GAWTC	2 cut(s)	70, 368
PfoI	TCCNGGA	1 cut(s)	211
PkrI	GCNGC	2 cut(s)	58, 379
Psp6I	CCWGG	1 cut(s)	211
PspEI	GGTNACC	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	211
PspN4I	GGNNCC	1 cut(s)	165
PspPI	GGNCC	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	163
RsaI	GTAC	2 cut(s)	53, 227
RsaNI	GTAC	2 cut(s)	52, 226
RseI	CAYNNNNRTG	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	2 cut(s)	57, 378
Sau3AI	GATC	1 cut(s)	163
Sau96I	GGNCC	1 cut(s)	178
ScrFI	CCNGG	1 cut(s)	213
SetI	ASST	3 cut(s)	227, 298, 325
SfaNI	GCATC	2 cut(s)	19, 207
SinI	GGWCC	1 cut(s)	178
SmiMI	CAYNNNNRTG	1 cut(s)	249
SsiI	CCGC	3 cut(s)	8, 30, 359
StyD4I	CCNGG	1 cut(s)	211
StyI	CCWWGG	1 cut(s)	74
TaaI	ACNGT	1 cut(s)	206
TaqI	TCGA	1 cut(s)	201
TfiI	GAWTC	2 cut(s)	70, 368
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	2 cut(s)	56, 377
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	1 cut(s)	233
TspGWI	ACGGA	1 cut(s)	15
VpaK11BI	GGWCC	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.