Rh5AG061700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0005442
Physical Location & Seq
Reverse (-)
5223676 .. 5226210
2535 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG061700.1

Sequence Viewer

Length: 312 bp
ATGATACCGCAGCAATGGGGTCCTCCCTGCAATCACGAATGCACGCACAAGTACGCAGCCCTTATGCAGATTCCATGGCGAGTATTTTGCAAGAAAGGGTGTGACACTGATGGAGAGACTTGGGAAGAATGCTTGGAGGAGTGCAATGAGATATGTTACAAGGATCCTGTCTTAAAGGATCAACAATGGAGTGCTTGCATTGACCGTTCTCCTGGAGTTGAAAGGTACTCAGAGGTATTTTGTCCTTTACTGCTCCTTCTACGTCTCTCAATAATACACTTTTTAGGGTATGAACAAGCATGCCAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

12.04

Weight (kDa)

4.91

Isoelectric Point (pI)

64.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 8
AclWI GGATC 3 cut(s) 158, 171, 186
AcsI RAATTY 1 cut(s) 306
AfaI GTAC 2 cut(s) 53, 227
AgsI TTSAA 1 cut(s) 221
AjnI CCWGG 1 cut(s) 211
Alw26I GTCTC 2 cut(s) 110, 269
AlwI GGATC 3 cut(s) 158, 171, 186
ApeKI GCWGC 2 cut(s) 10, 56
ApoI RAATTY 1 cut(s) 306
AspS9I GGNCC 1 cut(s) 20
AvaII GGWCC 1 cut(s) 20
BamHI GGATCC 1 cut(s) 163
BbvI GCAGC 2 cut(s) 22, 68
BccI CCATC 1 cut(s) 104
BcgI CGANNNNNNTGC 2 cut(s) 69, 103
BciT130I CCWGG 1 cut(s) 213
BcoDI GTCTC 2 cut(s) 110, 269
BisI GCNGC 2 cut(s) 11, 57
BlsI GCNGC 2 cut(s) 12, 58
Bme1390I CCNGG 1 cut(s) 213
Bme18I GGWCC 1 cut(s) 20
BmgT120I GGNCC 1 cut(s) 20
BmiI GGNNCC 2 cut(s) 21, 165
BmrFI CCNGG 1 cut(s) 213
BpmI CTGGAG 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 74
Bse3DI GCAATG 2 cut(s) 20, 151
BseBI CCWGG 1 cut(s) 213
BseDI CCNNGG 1 cut(s) 74
BseMI GCAATG 2 cut(s) 20, 151
BseMII CTCAG 1 cut(s) 243
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 2 cut(s) 22, 68
BsmAI GTCTC 2 cut(s) 110, 269
BsmBI CGTCTC 1 cut(s) 269
BsmI GAATGC 2 cut(s) 44, 134
Bsp143I GATC 2 cut(s) 163, 178
Bsp19I CCATGG 1 cut(s) 74
BspACI CCGC 1 cut(s) 8
BspCNI CTCAG 1 cut(s) 242
BspLI GGNNCC 2 cut(s) 21, 165
BspPI GGATC 3 cut(s) 158, 171, 186
BsrDI GCAATG 2 cut(s) 20, 151
BssECI CCNNGG 1 cut(s) 74
BssMI GATC 2 cut(s) 163, 178
BssT1I CCWWGG 1 cut(s) 74
Bst2UI CCWGG 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 206
BstC8I GCNNGC 3 cut(s) 44, 196, 301
BstDEI CTNAG 1 cut(s) 229
BstDSI CCRYGG 1 cut(s) 74
BstKTI GATC 2 cut(s) 166, 181
BstMAI GTCTC 2 cut(s) 110, 269
BstMBI GATC 2 cut(s) 163, 178
BstNI CCWGG 1 cut(s) 213
BstNSI RCATGY 1 cut(s) 303
BstSCI CCNGG 1 cut(s) 211
BstV1I GCAGC 2 cut(s) 22, 68
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
BtgI CCRYGG 1 cut(s) 74
BtsIMutI CAGTG 1 cut(s) 105
Cac8I GCNNGC 3 cut(s) 44, 196, 301
Cfr13I GGNCC 1 cut(s) 20
Csp6I GTAC 2 cut(s) 52, 226
CviAII CATG 2 cut(s) 75, 300
CviJI RGCY 1 cut(s) 59
CviKI_1 RGCY 1 cut(s) 59
CviQI GTAC 2 cut(s) 52, 226
DdeI CTNAG 1 cut(s) 229
DpnI GATC 2 cut(s) 165, 180
DpnII GATC 2 cut(s) 163, 178
Eco130I CCWWGG 1 cut(s) 74
Eco47I GGWCC 1 cut(s) 20
EcoO109I RGGNCCY 1 cut(s) 20
EcoRII CCWGG 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 74
ErhI CCWWGG 1 cut(s) 74
Esp3I CGTCTC 1 cut(s) 269
FaeI CATG 2 cut(s) 78, 303
FaiI YATR 5 cut(s) 65, 76, 154, 291, 301
FatI CATG 2 cut(s) 74, 299
Fnu4HI GCNGC 2 cut(s) 11, 57
Fsp4HI GCNGC 2 cut(s) 11, 57
GluI GCNGC 2 cut(s) 11, 57
GsuI CTGGAG 1 cut(s) 234
Hin1II CATG 2 cut(s) 78, 303
HinfI GANTC 1 cut(s) 70
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 1 cut(s) 35
HpyAV CCTTC 1 cut(s) 266
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4IV ACGT 1 cut(s) 262
HpyCH4V TGCA 6 cut(s) 30, 42, 67, 90, 144, 198
HpyF3I CTNAG 1 cut(s) 229
HpySE526I ACGT 1 cut(s) 262
Hsp92II CATG 2 cut(s) 78, 303
Kzo9I GATC 2 cut(s) 163, 178
LmnI GCTCC 1 cut(s) 258
LpnPI CCDG 4 cut(s) 40, 180, 198, 225
Lsp1109I GCAGC 2 cut(s) 22, 68
MaeII ACGT 1 cut(s) 262
MaeIII GTNAC 2 cut(s) 101, 155
MalI GATC 2 cut(s) 165, 180
MboI GATC 2 cut(s) 163, 178
MboII GAAGA 1 cut(s) 137
MflI RGATCY 1 cut(s) 163
MluCI AATT 1 cut(s) 306
MnlI CCTC 3 cut(s) 33, 130, 226
MseI TTAA 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 213
Mva1269I GAATGC 2 cut(s) 44, 134
MvaI CCWGG 1 cut(s) 213
NcoI CCATGG 1 cut(s) 74
NdeII GATC 2 cut(s) 163, 178
NlaIII CATG 2 cut(s) 78, 303
NlaIV GGNNCC 2 cut(s) 21, 165
NmuCI GTSAC 1 cut(s) 101
NspI RCATGY 1 cut(s) 303
PaeI GCATGC 1 cut(s) 303
PctI GAATGC 2 cut(s) 44, 134
PfeI GAWTC 1 cut(s) 70
PfoI TCCNGGA 1 cut(s) 211
PkrI GCNGC 2 cut(s) 12, 58
PpuMI RGGWCCY 1 cut(s) 20
Psp5II RGGWCCY 1 cut(s) 20
Psp6I CCWGG 1 cut(s) 211
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 2 cut(s) 21, 165
PspPI GGNCC 1 cut(s) 20
PspPPI RGGWCCY 1 cut(s) 20
PsuI RGATCY 1 cut(s) 163
RsaI GTAC 2 cut(s) 53, 227
RsaNI GTAC 2 cut(s) 52, 226
SaqAI TTAA 1 cut(s) 173
SatI GCNGC 2 cut(s) 11, 57
Sau3AI GATC 2 cut(s) 163, 178
Sau96I GGNCC 1 cut(s) 20
ScrFI CCNGG 1 cut(s) 213
SetI ASST 3 cut(s) 227, 237, 265
SinI GGWCC 1 cut(s) 20
SphI GCATGC 1 cut(s) 303
Sse9I AATT 1 cut(s) 306
SsiI CCGC 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 211
StyI CCWWGG 1 cut(s) 74
TaaI ACNGT 1 cut(s) 206
TaiI ACGT 1 cut(s) 265
TasI AATT 1 cut(s) 306
TfiI GAWTC 1 cut(s) 70
Tru1I TTAA 1 cut(s) 173
Tru9I TTAA 1 cut(s) 173
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 2 cut(s) 10, 56
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 1 cut(s) 306
TspRI CASTG 1 cut(s) 112
VpaK11BI GGWCC 1 cut(s) 20
XapI RAATTY 1 cut(s) 306
XceI RCATGY 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.