Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005442

Physical Location & Seq

Genomic Coordinates Forward (+)

26569546 .. 26572229

Gene Structure 2684 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g24820.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAGAAGATTAACATTAAGGAATAAGGAGCAAAGAACAAAACACAAAAGATTAACCACAAAAGAAATTTTATTACCAACTTTTTCAAAGGACCAGTTCTTGTTGGTTTTTTTCCAATTTCATCTTCTCCAGCAAAACAATTTCAATTTGTTCTCTAATGATTTTTTACCAGTTTGTCCCCATTTTTCGATTTTTGTGGATTTGGATTGTGAAGAAAACAAAAGGGCTTTCTTGGTATTTCCGAATGCTTCACCAACCTGGCCTTCTCACTTTATATATGTAGATTACAAAATCGCCCTCGATTGCCTTTCCCCATTTTCCCACCGCTCCATTTCCACCGAGCAAGGTTCTGATCGGAGACCGAGAGAAAAAAAGAAGAAGATGATACCGCATCAATGGGGGTCTCCGTGCGGCAACCAATGCACGCACAAGTACGCAGCTCTTATGCAGATTCCATGGAGAGTATTTTGCAAAAAAGGGTGCGATGCGGATGGAGAAACTTGGGAAGAATGCTTGGAAGAGTGCAATGAGATATGCTATAAGGATCCTGTCTTAAAGGACCAACAATGGAGTGCTTGCATTGACCGTTCTCCCGGAGTTGACAGGTACTCAGAGGAGTGTTTTCATGCTTGTGTATCTGGTTGCGGTTCCAAGTTTGATAAAAATCCAGACGTAGCTGATAAAGTTCGTCCAAACAGGCCGGCTAACCCTCCCCCTGTTGAAAAGCCCGCCGCACCACCTGCTGAATCCACGGCAACAGCCGAAGACATATCAACAGCCGAAGACATTCTTGGCACTTCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

269

Amino Acids

30.69

Weight (kDa)

6.7

Isoelectric Point (pI)

61.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21720 AT4G21720 AT4G21720
fragaria_vesca	FvH4_3g09420 FvH4_5g20990
malus_domestica	MD05G1314200.v1.1 MD10G1295500.v1.1
prunus_persica	Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1 Prupe.4G044900_v2.0.a1
pyrus_communis	pycom05g29220 pycom10g24820
rosa_chinensis	RchiOBHm_Chr5g0008131
rosa_laevigata	RLG00000031538
rosa_multiflora	Rmu_sc0036405.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068360
rosa_rugosa	Rorug04G0433400
rosa_samantha	Rh5AG061700 Rh5BG058400 Rh5CG068600 Rh5DG057700
rosa_wichuraiana	Rw5G005890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	748
Acc36I	ACCTGC	1 cut(s)	748
AccBSI	CCGCTC	1 cut(s)	327
AciI	CCGC	7 cut(s)	325, 389, 411, 488, 645, 729, 732
AclWI	GGATC	2 cut(s)	539, 552
AcsI	RAATTY	1 cut(s)	66
AfaI	GTAC	2 cut(s)	434, 608
AgsI	TTSAA	3 cut(s)	87, 145, 722
AjnI	CCWGG	1 cut(s)	257
AjuI	GAANNNNNNNTTGG	6 cut(s)	108, 140, 247, 279, 774, 806
AluBI	AGCT	2 cut(s)	440, 677
AluI	AGCT	2 cut(s)	440, 677
Alw26I	GTCTC	2 cut(s)	352, 408
AlwI	GGATC	2 cut(s)	539, 552
AoxI	GGCC	2 cut(s)	260, 698
ApeKI	GCWGC	1 cut(s)	437
ApoI	RAATTY	1 cut(s)	66
Asp700I	GAANNNNTTC	1 cut(s)	786
AspS9I	GGNCC	2 cut(s)	91, 559
AsuC2I	CCSGG	1 cut(s)	594
AsuHPI	GGTGA	1 cut(s)	243
AvaII	GGWCC	2 cut(s)	91, 559
BamHI	GGATCC	1 cut(s)	544
BbsI	GAAGAC	2 cut(s)	771, 789
BbvI	GCAGC	1 cut(s)	449
BccI	CCATC	1 cut(s)	485
BceAI	ACGGC	1 cut(s)	768
BciT130I	CCWGG	1 cut(s)	259
BcnI	CCSGG	1 cut(s)	594
BcoDI	GTCTC	2 cut(s)	352, 408
BfuAI	ACCTGC	1 cut(s)	748
BisI	GCNGC	3 cut(s)	412, 438, 732
BlsI	GCNGC	3 cut(s)	413, 439, 733
Bme1390I	CCNGG	2 cut(s)	259, 594
Bme18I	GGWCC	2 cut(s)	91, 559
BmgT120I	GGNCC	2 cut(s)	91, 559
BmiI	GGNNCC	2 cut(s)	546, 649
BmrFI	CCNGG	2 cut(s)	259, 594
BmsI	GCATC	2 cut(s)	400, 475
BpiI	GAAGAC	2 cut(s)	771, 789
BpmI	CTGGAG	1 cut(s)	113
BpuMI	CCSGG	1 cut(s)	594
BsaBI	GATNNNNATC	1 cut(s)	663
BsaI	GGTCTC	2 cut(s)	352, 408
BsaJI	CCNNGG	2 cut(s)	455, 750
Bse118I	RCCGGY	1 cut(s)	700
Bse1I	ACTGG	2 cut(s)	94, 170
Bse3DI	GCAATG	1 cut(s)	532
Bse8I	GATNNNNATC	1 cut(s)	663
BseBI	CCWGG	1 cut(s)	259
BseDI	CCNNGG	2 cut(s)	455, 750
BseGI	GGATG	1 cut(s)	496
BseJI	GATNNNNATC	1 cut(s)	663
BseMI	GCAATG	1 cut(s)	532
BseMII	CTCAG	1 cut(s)	624
BseNI	ACTGG	2 cut(s)	94, 170
BseRI	GAGGAG	1 cut(s)	629
BseXI	GCAGC	1 cut(s)	449
BshFI	GGCC	2 cut(s)	262, 700
BsiSI	CCGG	2 cut(s)	594, 701
BslFI	GGGAC	1 cut(s)	162
BsmAI	GTCTC	2 cut(s)	352, 408
BsmFI	GGGAC	1 cut(s)	162
BsmI	GAATGC	2 cut(s)	250, 515
BsnI	GGCC	2 cut(s)	262, 700
Bso31I	GGTCTC	2 cut(s)	352, 408
Bsp143I	GATC	2 cut(s)	352, 544
Bsp19I	CCATGG	1 cut(s)	455
BspACI	CCGC	7 cut(s)	325, 389, 411, 488, 645, 729, 732
BspANI	GGCC	2 cut(s)	262, 700
BspCNI	CTCAG	1 cut(s)	623
BspLI	GGNNCC	2 cut(s)	546, 649
BspMI	ACCTGC	1 cut(s)	748
BspPI	GGATC	2 cut(s)	539, 552
BspTNI	GGTCTC	2 cut(s)	352, 408
BsrBI	CCGCTC	1 cut(s)	327
BsrDI	GCAATG	1 cut(s)	532
BsrFI	RCCGGY	1 cut(s)	700
BsrI	ACTGG	2 cut(s)	94, 170
BssAI	RCCGGY	1 cut(s)	700
BssECI	CCNNGG	2 cut(s)	455, 750
BssMI	GATC	2 cut(s)	352, 544
BssT1I	CCWWGG	1 cut(s)	455
Bst2UI	CCWGG	1 cut(s)	259
Bst4CI	ACNGT	1 cut(s)	587
Bst6I	CTCTTC	1 cut(s)	513
BstAPI	GCANNNNNTGC	2 cut(s)	420, 740
BstC8I	GCNNGC	4 cut(s)	425, 577, 702, 729
BstDEI	CTNAG	1 cut(s)	610
BstDSI	CCRYGG	2 cut(s)	455, 750
BstF5I	GGATG	1 cut(s)	496
BstKTI	GATC	2 cut(s)	355, 547
BstMAI	GTCTC	2 cut(s)	352, 408
BstMBI	GATC	2 cut(s)	352, 544
BstMWI	GCNNNNNNNGC	2 cut(s)	420, 740
BstNI	CCWGG	1 cut(s)	259
BstSCI	CCNGG	2 cut(s)	257, 592
BstV1I	GCAGC	1 cut(s)	449
BstV2I	GAAGAC	2 cut(s)	771, 789
BstX2I	RGATCY	1 cut(s)	544
BstYI	RGATCY	1 cut(s)	544
BsuRI	GGCC	2 cut(s)	262, 700
BtgI	CCRYGG	2 cut(s)	455, 750
BtgZI	GCGATG	1 cut(s)	498
BtsCI	GGATG	1 cut(s)	496
BveI	ACCTGC	1 cut(s)	748
Cac8I	GCNNGC	4 cut(s)	425, 577, 702, 729
Cfr10I	RCCGGY	1 cut(s)	700
Cfr13I	GGNCC	2 cut(s)	91, 559
Csp6I	GTAC	2 cut(s)	433, 607
CviAII	CATG	2 cut(s)	456, 626
CviJI	RGCY	9 cut(s)	227, 262, 440, 677, 700, 704, 727, 761, 779
CviKI_1	RGCY	9 cut(s)	227, 262, 440, 677, 700, 704, 727, 761, 779
CviQI	GTAC	2 cut(s)	433, 607
DdeI	CTNAG	1 cut(s)	610
DpnI	GATC	2 cut(s)	354, 546
DpnII	GATC	2 cut(s)	352, 544
Eam1104I	CTCTTC	1 cut(s)	513
EarI	CTCTTC	1 cut(s)	513
Eco130I	CCWWGG	1 cut(s)	455
Eco31I	GGTCTC	2 cut(s)	352, 408
Eco47I	GGWCC	2 cut(s)	91, 559
EcoRII	CCWGG	1 cut(s)	257
EcoT14I	CCWWGG	1 cut(s)	455
ErhI	CCWWGG	1 cut(s)	455
FaeI	CATG	2 cut(s)	459, 629
FalI	AAGNNNNNCTT	2 cut(s)	774, 806
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	2 cut(s)	455, 625
FauI	CCCGC	1 cut(s)	736
Fnu4HI	GCNGC	3 cut(s)	412, 438, 732
FokI	GGATG	1 cut(s)	503
Fsp4HI	GCNGC	3 cut(s)	412, 438, 732
GluI	GCNGC	3 cut(s)	412, 438, 732
GsuI	CTGGAG	1 cut(s)	113
HaeIII	GGCC	2 cut(s)	262, 700
HapII	CCGG	2 cut(s)	594, 701
Hin1II	CATG	2 cut(s)	459, 629
HincII	GTYRAC	1 cut(s)	601
HindII	GTYRAC	1 cut(s)	601
HinfI	GANTC	2 cut(s)	451, 746
HpaII	CCGG	2 cut(s)	594, 701
HphI	GGTGA	1 cut(s)	243
Hpy166II	GTNNAC	1 cut(s)	601
Hpy188I	TCNGA	4 cut(s)	243, 352, 357, 613
Hpy188III	TCNNGA	1 cut(s)	668
Hpy8I	GTNNAC	1 cut(s)	601
HpyAV	CCTTC	1 cut(s)	273
HpyCH4III	ACNGT	1 cut(s)	587
HpyCH4IV	ACGT	1 cut(s)	672
HpyCH4V	TGCA	6 cut(s)	423, 448, 471, 525, 579, 803
HpyF10VI	GCNNNNNNNGC	2 cut(s)	420, 740
HpyF3I	CTNAG	1 cut(s)	610
HpySE526I	ACGT	1 cut(s)	672
Hsp92II	CATG	2 cut(s)	459, 629
KroI	GCCGGC	1 cut(s)	700
KroNI	GCCGGC	1 cut(s)	702
Kzo9I	GATC	2 cut(s)	352, 544
LmnI	GCTCC	2 cut(s)	28, 332
Lsp1109I	GCAGC	1 cut(s)	449
LweI	GCATC	2 cut(s)	400, 475
MaeII	ACGT	1 cut(s)	672
MalI	GATC	2 cut(s)	354, 546
MbiI	CCGCTC	1 cut(s)	327
MboI	GATC	2 cut(s)	352, 544
MboII	GAAGA	9 cut(s)	18, 116, 224, 388, 391, 518, 530, 776, 794
MflI	RGATCY	1 cut(s)	544
MluCI	AATT	4 cut(s)	66, 116, 139, 145
MnlI	CCTC	3 cut(s)	308, 607, 720
MroNI	GCCGGC	1 cut(s)	700
MroXI	GAANNNNTTC	1 cut(s)	786
MseI	TTAA	4 cut(s)	11, 17, 53, 554
MslI	CAYNNNNRTG	1 cut(s)	630
MspI	CCGG	2 cut(s)	594, 701
MspR9I	CCNGG	2 cut(s)	259, 594
Mva1269I	GAATGC	2 cut(s)	250, 515
MvaI	CCWGG	1 cut(s)	259
MwoI	GCNNNNNNNGC	2 cut(s)	420, 740
NaeI	GCCGGC	1 cut(s)	702
NciI	CCSGG	1 cut(s)	594
NcoI	CCATGG	1 cut(s)	455
NdeII	GATC	2 cut(s)	352, 544
NgoMIV	GCCGGC	1 cut(s)	700
NlaIII	CATG	2 cut(s)	459, 629
NlaIV	GGNNCC	2 cut(s)	546, 649
PaqCI	CACCTGC	1 cut(s)	748
PctI	GAATGC	2 cut(s)	250, 515
PdiI	GCCGGC	1 cut(s)	702
PdmI	GAANNNNTTC	1 cut(s)	786
PfeI	GAWTC	2 cut(s)	451, 746
PfoI	TCCNGGA	1 cut(s)	592
PkrI	GCNGC	3 cut(s)	413, 439, 733
Psp6I	CCWGG	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	257
PspN4I	GGNNCC	2 cut(s)	546, 649
PspPI	GGNCC	2 cut(s)	91, 559
PsuI	RGATCY	1 cut(s)	544
RsaI	GTAC	2 cut(s)	434, 608
RsaNI	GTAC	2 cut(s)	433, 607
RseI	CAYNNNNRTG	1 cut(s)	630
SaqAI	TTAA	4 cut(s)	11, 17, 53, 554
SatI	GCNGC	3 cut(s)	412, 438, 732
Sau3AI	GATC	2 cut(s)	352, 544
Sau96I	GGNCC	2 cut(s)	91, 559
ScrFI	CCNGG	2 cut(s)	259, 594
SetI	ASST	7 cut(s)	260, 349, 442, 608, 675, 679, 742
SfaNI	GCATC	2 cut(s)	400, 475
SinI	GGWCC	2 cut(s)	91, 559
SmiMI	CAYNNNNRTG	1 cut(s)	630
Sse9I	AATT	4 cut(s)	66, 116, 139, 145
SsiI	CCGC	7 cut(s)	325, 389, 411, 488, 645, 729, 732
StyD4I	CCNGG	2 cut(s)	257, 592
StyI	CCWWGG	1 cut(s)	455
TaaI	ACNGT	1 cut(s)	587
TaiI	ACGT	1 cut(s)	675
TaqI	TCGA	2 cut(s)	188, 300
TaqII	GACCGA	1 cut(s)	376
TasI	AATT	4 cut(s)	66, 116, 139, 145
TauI	GCSGC	2 cut(s)	414, 734
TfiI	GAWTC	2 cut(s)	451, 746
Tru1I	TTAA	4 cut(s)	11, 17, 53, 554
Tru9I	TTAA	4 cut(s)	11, 17, 53, 554
TseI	GCWGC	1 cut(s)	437
TspDTI	ATGAA	2 cut(s)	110, 614
TspGWI	ACGGA	1 cut(s)	396
VpaK11BI	GGWCC	2 cut(s)	91, 559
XapI	RAATTY	1 cut(s)	66
XmnI	GAANNNNTTC	1 cut(s)	786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.