Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015992

Physical Location & Seq

Genomic Coordinates Reverse (-)

11646109 .. 11648644

Gene Structure 2536 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G21960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGGAGGCAAAGGTGTGATGATGGTGGCGATACTTTGCCTTTGGGCACTCTCTGCAACATCTGAAGCAGTAACAGAGGCTGAGCCAGGTTTGATGATGAACTTCTACAAGGACACGTGTCCTCAGGCCGAAGACATCGTCCGTGAACAAGTCAAACTCCTCTACAAACGCCACAAGAACACCGCTTTCTCTTGGCTCCGTAACATCTTCCATGACTGCGCCGTTGAGTCATGTGATGCGTCGCTTTTGCTGGATTCGACAAGAAGAGAGCTAGGAGAGAAAGAACACGACAGGAGCTTCGGACTTAGAAACTTTAGGTACATCGAGGAGATCAAGGAAGCTCTCGAGAGGGAGTGTCCTGGTGTTGTCTCATGTTCTGACATTCTCGTCTTGTCCGCAAGAGAAGGCATCGAAGCAGTAGGAGGACCTTATATTCCTTTGAAGACAGGAAGGAGAGATGGACTTAAAAGCAGGACGGATATGCTCGAGTCATATCTTCCCGACCACAACGAGAGTATCTCCGTCGTTCTTGAAAAGTTCAAATCCATCGGTATCGACACTCCCGGCCTCGTCGCCCTCCTAGGGTCACACAGCGTGGGAAGAACTCACTGTGTCAAGCTGGTCCATCGTTTGTACCCTGAGGTGGACCCGTCCTTAAACCCGGACCACGTCCCTCACATGCTACACAAGTGTCCTGACTCGATCCCTGACCCAAAGGCGGTCCAGTACGTGCGTAACGACCGTGGCACCCCCATGGTGCTAGACAACAATTACTACCGTAACATCCTAGACAACAAGGGTTTGCTCCTTGTGGACCATCAGCTCGCACACGACAAACGAACCAGACCAATCGTTAAGAAGATGGCTAAGGACCAGGCCTACTTCTTCAAGGAGTTCACTAGGGCAATCCAGATCTTATCCGAGAACAACCCCTTGACTGGCTCTAAGGGTGAGATCAGGAAGCAATGTAATCTCGCAAACAAGAACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

330

Amino Acids

37.29

Weight (kDa)

7.62

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	47 - 291	4.6e-70	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21960
fragaria_vesca	FvH4_3g02090
malus_domestica	MD05G1345800.v1.1 MD10G1321200.v1.1
prunus_persica	Prupe.4G021100_v2.0.a1
pyrus_communis	pycom10g27190
rosa_chinensis	RchiOBHm_Chr5g0003181
rosa_laevigata	RLG00000031083
rosa_multiflora	Rmu_sc0000146.1_g000034
rosa_roxburghii	Rroxscaffold_1G00072830
rosa_rugosa	Rorug04G0401100
rosa_samantha	Rh5AG026000 Rh5BG027200 Rh5CG028800
rosa_wichuraiana	Rw5G002410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	386
AccB1I	GGYRCC	1 cut(s)	746
AciI	CCGC	3 cut(s)	183, 396, 719
AclWI	GGATC	1 cut(s)	697
AcuI	CTGAAG	1 cut(s)	84
AcvI	CACGTG	1 cut(s)	117
AdeI	CACNNNGTG	1 cut(s)	595
AfaI	GTAC	3 cut(s)	320, 635, 728
AfiI	CCNNNNNNNGG	4 cut(s)	582, 643, 718, 938
AflIII	ACRYGT	2 cut(s)	114, 116
AgsI	TTSAA	4 cut(s)	442, 533, 541, 889
AjiI	CACGTC	1 cut(s)	670
AjnI	CCWGG	3 cut(s)	85, 358, 873
AluBI	AGCT	5 cut(s)	271, 297, 341, 619, 823
AluI	AGCT	5 cut(s)	271, 297, 341, 619, 823
Alw26I	GTCTC	1 cut(s)	373
AlwI	GGATC	1 cut(s)	697
AlwNI	CAGNNNCTG	1 cut(s)	80
Ama87I	CYCGRG	2 cut(s)	344, 485
AoxI	GGCC	3 cut(s)	126, 565, 876
ArsI	GACNNNNNNTTYG	4 cut(s)	123, 155, 281, 313
AspA2I	CCTAGG	1 cut(s)	580
AspLEI	GCGC	1 cut(s)	221
AspS9I	GGNCC	7 cut(s)	425, 622, 646, 664, 721, 814, 871
AsuC2I	CCSGG	2 cut(s)	564, 662
AsuHPI	GGTGA	1 cut(s)	962
AvaI	CYCGRG	2 cut(s)	344, 485
AvaII	GGWCC	7 cut(s)	425, 622, 646, 664, 721, 814, 871
AvrII	CCTAGG	1 cut(s)	580
AxyI	CCTNAGG	2 cut(s)	123, 639
BaeGI	GKGCMC	1 cut(s)	49
BaeI	ACNNNNGTAYC	2 cut(s)	499, 532
BanI	GGYRCC	1 cut(s)	746
BbrPI	CACGTG	1 cut(s)	117
BbsI	GAAGAC	2 cut(s)	138, 449
BccI	CCATC	6 cut(s)	16, 452, 554, 633, 825, 856
BceAI	ACGGC	1 cut(s)	206
BciT130I	CCWGG	3 cut(s)	87, 360, 875
BcnI	CCSGG	2 cut(s)	564, 662
BcoDI	GTCTC	1 cut(s)	373
BfaI	CTAG	5 cut(s)	272, 581, 761, 788, 900
BglII	AGATCT	1 cut(s)	912
BlnI	CCTAGG	1 cut(s)	580
BlpI	GCTNAGC	1 cut(s)	81
Bme1390I	CCNGG	5 cut(s)	87, 360, 564, 662, 875
Bme18I	GGWCC	7 cut(s)	425, 622, 646, 664, 721, 814, 871
BmeT110I	CYCGRG	2 cut(s)	344, 485
BmgBI	CACGTC	1 cut(s)	670
BmgT120I	GGNCC	7 cut(s)	425, 622, 646, 664, 721, 814, 871
BmiI	GGNNCC	3 cut(s)	197, 648, 748
BmrFI	CCNGG	5 cut(s)	87, 360, 564, 662, 875
BmsI	GCATC	2 cut(s)	226, 417
BoxI	GACNNNNGTC	1 cut(s)	117
BpiI	GAAGAC	2 cut(s)	138, 449
BplI	GAGNNNNNCTC	2 cut(s)	503, 535
Bpu10I	CCTNAGC	1 cut(s)	867
Bpu1102I	GCTNAGC	1 cut(s)	81
BpuMI	CCSGG	2 cut(s)	564, 662
BsaAI	YACGTR	2 cut(s)	117, 730
BsaJI	CCNNGG	3 cut(s)	580, 742, 753
Bsc4I	CCNNNNNNNGG	4 cut(s)	582, 643, 718, 938
Bse1I	ACTGG	2 cut(s)	724, 943
Bse21I	CCTNAGG	2 cut(s)	123, 639
Bse3DI	GCAATG	1 cut(s)	971
BseBI	CCWGG	3 cut(s)	87, 360, 875
BseDI	CCNNGG	3 cut(s)	580, 742, 753
BseGI	GGATG	1 cut(s)	783
BseLI	CCNNNNNNNGG	4 cut(s)	582, 643, 718, 938
BseMI	GCAATG	1 cut(s)	971
BseMII	CTCAG	3 cut(s)	72, 137, 630
BseNI	ACTGG	2 cut(s)	724, 943
BseRI	GAGGAG	2 cut(s)	149, 341
BseSI	GKGCMC	1 cut(s)	49
Bsh1285I	CGRYCG	1 cut(s)	742
BshFI	GGCC	3 cut(s)	128, 567, 878
BshNI	GGYRCC	1 cut(s)	746
BsiEI	CGRYCG	1 cut(s)	742
BsiHKCI	CYCGRG	2 cut(s)	344, 485
BsiSI	CCGG	2 cut(s)	564, 662
BslFI	GGGAC	1 cut(s)	656
BslI	CCNNNNNNNGG	4 cut(s)	582, 643, 718, 938
BsmAI	GTCTC	1 cut(s)	373
BsmFI	GGGAC	1 cut(s)	656
BsnI	GGCC	3 cut(s)	128, 567, 878
BsoBI	CYCGRG	2 cut(s)	344, 485
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp143I	GATC	4 cut(s)	330, 702, 912, 954
Bsp1720I	GCTNAGC	1 cut(s)	81
Bsp19I	CCATGG	1 cut(s)	753
BspACI	CCGC	3 cut(s)	183, 396, 719
BspANI	GGCC	3 cut(s)	128, 567, 878
BspCNI	CTCAG	3 cut(s)	73, 136, 631
BspLI	GGNNCC	3 cut(s)	197, 648, 748
BspPI	GGATC	1 cut(s)	697
BspT107I	GGYRCC	1 cut(s)	746
BsrDI	GCAATG	1 cut(s)	971
BsrI	ACTGG	2 cut(s)	724, 943
BssECI	CCNNGG	3 cut(s)	580, 742, 753
BssMI	GATC	4 cut(s)	330, 702, 912, 954
BssT1I	CCWWGG	2 cut(s)	580, 753
Bst2UI	CCWGG	3 cut(s)	87, 360, 875
Bst4CI	ACNGT	3 cut(s)	611, 743, 779
Bst6I	CTCTTC	1 cut(s)	259
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstBAI	YACGTR	2 cut(s)	117, 730
BstC8I	GCNNGC	1 cut(s)	825
BstDEI	CTNAG	6 cut(s)	81, 123, 305, 639, 867, 945
BstDSI	CCRYGG	2 cut(s)	742, 753
BstF5I	GGATG	1 cut(s)	783
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	4 cut(s)	333, 705, 915, 957
BstMAI	GTCTC	1 cut(s)	373
BstMBI	GATC	4 cut(s)	330, 702, 912, 954
BstMCI	CGRYCG	1 cut(s)	742
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	3 cut(s)	87, 360, 875
BstNSI	RCATGY	1 cut(s)	682
BstPAI	GACNNNNGTC	1 cut(s)	117
BstSCI	CCNGG	5 cut(s)	85, 358, 562, 660, 873
BstSLI	GKGCMC	1 cut(s)	49
BstV2I	GAAGAC	2 cut(s)	138, 449
BstX2I	RGATCY	1 cut(s)	912
BstYI	RGATCY	1 cut(s)	912
Bsu36I	CCTNAGG	2 cut(s)	123, 639
BsuRI	GGCC	3 cut(s)	128, 567, 878
BtgI	CCRYGG	2 cut(s)	742, 753
BtrI	CACGTC	1 cut(s)	670
BtsCI	GGATG	1 cut(s)	783
BtsIMutI	CAGTG	1 cut(s)	607
Cac8I	GCNNGC	1 cut(s)	825
CaiI	CAGNNNCTG	1 cut(s)	80
CfoI	GCGC	1 cut(s)	221
Cfr13I	GGNCC	7 cut(s)	425, 622, 646, 664, 721, 814, 871
CseI	GACGC	1 cut(s)	228
Csp6I	GTAC	3 cut(s)	319, 634, 727
CviAII	CATG	5 cut(s)	212, 231, 372, 679, 754
CviQI	GTAC	3 cut(s)	319, 634, 727
DdeI	CTNAG	6 cut(s)	81, 123, 305, 639, 867, 945
DpnI	GATC	4 cut(s)	332, 704, 914, 956
DpnII	GATC	4 cut(s)	330, 702, 912, 954
DraIII	CACNNNGTG	1 cut(s)	595
DrdI	GACNNNNNNGTC	1 cut(s)	386
DseDI	GACNNNNNNGTC	1 cut(s)	386
Eam1104I	CTCTTC	1 cut(s)	259
EarI	CTCTTC	1 cut(s)	259
Eco130I	CCWWGG	2 cut(s)	580, 753
Eco147I	AGGCCT	1 cut(s)	878
Eco47I	GGWCC	7 cut(s)	425, 622, 646, 664, 721, 814, 871
Eco57I	CTGAAG	1 cut(s)	84
Eco72I	CACGTG	1 cut(s)	117
Eco81I	CCTNAGG	2 cut(s)	123, 639
Eco88I	CYCGRG	2 cut(s)	344, 485
EcoO109I	RGGNCCY	1 cut(s)	425
EcoRII	CCWGG	3 cut(s)	85, 358, 873
EcoT14I	CCWWGG	2 cut(s)	580, 753
ErhI	CCWWGG	2 cut(s)	580, 753
FaeI	CATG	5 cut(s)	215, 234, 375, 682, 757
FaiI	YATR	8 cut(s)	213, 232, 373, 432, 482, 493, 680, 755
FaqI	GGGAC	1 cut(s)	656
FatI	CATG	5 cut(s)	211, 230, 371, 678, 753
FokI	GGATG	1 cut(s)	770
FspBI	CTAG	5 cut(s)	272, 581, 761, 788, 900
GlaI	GCGC	1 cut(s)	220
HaeIII	GGCC	3 cut(s)	128, 567, 878
HapII	CCGG	2 cut(s)	564, 662
HgaI	GACGC	1 cut(s)	228
HhaI	GCGC	1 cut(s)	221
Hin1II	CATG	5 cut(s)	215, 234, 375, 682, 757
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HinfI	GANTC	4 cut(s)	227, 254, 488, 698
HpaII	CCGG	2 cut(s)	564, 662
HphI	GGTGA	1 cut(s)	962
Hpy166II	GTNNAC	4 cut(s)	146, 646, 814, 897
Hpy188I	TCNGA	4 cut(s)	64, 302, 379, 922
Hpy188III	TCNNGA	7 cut(s)	344, 346, 500, 530, 695, 910, 958
Hpy8I	GTNNAC	4 cut(s)	146, 646, 814, 897
Hpy99I	CGWCG	3 cut(s)	244, 527, 575
HpyAV	CCTTC	2 cut(s)	398, 444
HpyCH4III	ACNGT	3 cut(s)	611, 743, 779
HpyCH4IV	ACGT	3 cut(s)	116, 669, 729
HpyCH4V	TGCA	1 cut(s)	56
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	6 cut(s)	81, 123, 305, 639, 867, 945
HpySE526I	ACGT	3 cut(s)	116, 669, 729
Hsp92II	CATG	5 cut(s)	215, 234, 375, 682, 757
HspAI	GCGC	1 cut(s)	219
Kzo9I	GATC	4 cut(s)	330, 702, 912, 954
LmnI	GCTCC	3 cut(s)	201, 294, 810
LweI	GCATC	2 cut(s)	226, 417
MaeI	CTAG	5 cut(s)	272, 581, 761, 788, 900
MaeII	ACGT	3 cut(s)	116, 669, 729
MaeIII	GTNAC	5 cut(s)	70, 200, 585, 734, 779
MalI	GATC	4 cut(s)	332, 704, 914, 956
MboI	GATC	4 cut(s)	330, 702, 912, 954
MboII	GAAGA	8 cut(s)	143, 199, 276, 454, 488, 612, 871, 877
MflI	RGATCY	1 cut(s)	912
MhlI	GDGCHC	1 cut(s)	49
MluCI	AATT	1 cut(s)	769
MlyI	GAGTC	3 cut(s)	236, 497, 692
MseI	TTAA	3 cut(s)	465, 656, 855
MslI	CAYNNNNRTG	1 cut(s)	752
MspI	CCGG	2 cut(s)	564, 662
MspR9I	CCNGG	5 cut(s)	87, 360, 564, 662, 875
MvaI	CCWGG	3 cut(s)	87, 360, 875
MwoI	GCNNNNNNNGC	1 cut(s)	53
NciI	CCSGG	2 cut(s)	564, 662
NcoI	CCATGG	1 cut(s)	753
NdeII	GATC	4 cut(s)	330, 702, 912, 954
NlaIII	CATG	5 cut(s)	215, 234, 375, 682, 757
NlaIV	GGNNCC	3 cut(s)	197, 648, 748
NmuCI	GTSAC	1 cut(s)	585
NspI	RCATGY	1 cut(s)	682
PaeR7I	CTCGAG	2 cut(s)	344, 485
PceI	AGGCCT	1 cut(s)	878
PcsI	WCGNNNNNNNCGW	1 cut(s)	735
PfeI	GAWTC	1 cut(s)	254
PflFI	GACNNNGTC	2 cut(s)	137, 668
PleI	GAGTC	3 cut(s)	235, 496, 692
PmaCI	CACGTG	1 cut(s)	117
PmlI	CACGTG	1 cut(s)	117
PpsI	GAGTC	3 cut(s)	235, 496, 692
Ppu21I	YACGTR	2 cut(s)	117, 730
PpuMI	RGGWCCY	1 cut(s)	425
PshAI	GACNNNNGTC	1 cut(s)	117
Psp5II	RGGWCCY	1 cut(s)	425
Psp6I	CCWGG	3 cut(s)	85, 358, 873
PspCI	CACGTG	1 cut(s)	117
PspGI	CCWGG	3 cut(s)	85, 358, 873
PspN4I	GGNNCC	3 cut(s)	197, 648, 748
PspPI	GGNCC	7 cut(s)	425, 622, 646, 664, 721, 814, 871
PspPPI	RGGWCCY	1 cut(s)	425
PspXI	VCTCGAGB	1 cut(s)	485
PstNI	CAGNNNCTG	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	912
PsyI	GACNNNGTC	2 cut(s)	137, 668
RsaI	GTAC	3 cut(s)	320, 635, 728
RsaNI	GTAC	3 cut(s)	319, 634, 727
RseI	CAYNNNNRTG	1 cut(s)	752
SaqAI	TTAA	3 cut(s)	465, 656, 855
Sau3AI	GATC	4 cut(s)	330, 702, 912, 954
Sau96I	GGNCC	7 cut(s)	425, 622, 646, 664, 721, 814, 871
SchI	GAGTC	3 cut(s)	236, 497, 692
ScrFI	CCNGG	5 cut(s)	87, 360, 564, 662, 875
SduI	GDGCHC	1 cut(s)	49
SfaNI	GCATC	2 cut(s)	226, 417
Sfr274I	CTCGAG	2 cut(s)	344, 485
SinI	GGWCC	7 cut(s)	425, 622, 646, 664, 721, 814, 871
SlaI	CTCGAG	2 cut(s)	344, 485
SmiMI	CAYNNNNRTG	1 cut(s)	752
SmlI	CTYRAG	2 cut(s)	344, 485
SmoI	CTYRAG	2 cut(s)	344, 485
Sse9I	AATT	1 cut(s)	769
SseBI	AGGCCT	1 cut(s)	878
SsiI	CCGC	3 cut(s)	183, 396, 719
SspMI	CTAG	5 cut(s)	272, 581, 761, 788, 900
StuI	AGGCCT	1 cut(s)	878
StyD4I	CCNGG	5 cut(s)	85, 358, 562, 660, 873
StyI	CCWWGG	2 cut(s)	580, 753
TaaI	ACNGT	3 cut(s)	611, 743, 779
TaiI	ACGT	3 cut(s)	119, 672, 732
TaqI	TCGA	7 cut(s)	257, 324, 345, 411, 486, 555, 701
TasI	AATT	1 cut(s)	769
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	3 cut(s)	465, 656, 855
Tru9I	TTAA	3 cut(s)	465, 656, 855
TscAI	CASTG	1 cut(s)	614
TseFI	GTSAC	1 cut(s)	585
Tsp45I	GTSAC	1 cut(s)	585
TspDTI	ATGAA	1 cut(s)	113
TspGWI	ACGGA	4 cut(s)	131, 188, 491, 511
TspRI	CASTG	1 cut(s)	614
Tth111I	GACNNNGTC	2 cut(s)	137, 668
VpaK11BI	GGWCC	7 cut(s)	425, 622, 646, 664, 721, 814, 871
XceI	RCATGY	1 cut(s)	682
XhoI	CTCGAG	2 cut(s)	344, 485
XmaJI	CCTAGG	1 cut(s)	580
XspI	CTAG	5 cut(s)	272, 581, 761, 788, 900

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.