Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0015992

Physical Location & Seq

Genomic Coordinates Forward (+)

1061045 .. 1063286

Gene Structure 2242 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g02090.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGGTTCCAGAGCTCTCTTCTTCTTCTTTGCCTTGCTATCTCTCTCAGCAGTGCTTTGCTTTGCTGAGAGCAATGAAGAAGACCCTGGTCTTGTTATGAACTTCTATAGTGACTCATGTCCTCAGGCTGAGGAGATCGTCAGAGAGCAGGTCAAGCTTCTCTACAAGCGCCACAAGAACACTGCTTTCTCTTGGCTCAGGAACATCTTCCATGACTGTGCTGTCCAGTCATGTGATGCTTCACTACTTTTGGACTCAACAAGGAGGTCTTTGTCTGAGAAGGAAATGGACAGAAGCTTTGGGATGAGAAACTTCAGGTACATTGAGGAGATCAAAGAAGCATTAGAGAGGGAGTGTCCTGGAGTTGTTTCTTGCTCAGATATTCTTGTCTTGTCAGCCAGAGAAGGAGTTGTTAGGCTAGGAGGTCCATTCATCCCTCTTAAAACTGGAAGGAGAGATGGTAGAAGGAGCAGAGCTGAGATCCTTGAGGAGTACCTTCCTGACCACAATGAGAGCATGTCAACTGTTCTTGAGAAATTCTCTGCCATGGGCATTGACACCCCTGGAGTTGTTGCCCTTCTTGGAGCTCACAGTGTTGGAAGAACACACTGTGTGAAGCTGGTGCACCGTTTGTACCCAGAAGTAGACCCAGCTCTGAACCCAGACCATGTCCCTCACATGCTTAAGAAGTGCCCTGATGCCATCCCTGACCCCAAGGCAGTCCAGTACGTGAGGAATGACCGTGGTACCCCCATGATCTTCGACAACAACTACTACAGGAACATCTTGGACAACAAGGGTTTGATGATGGTGGACCACCAGCTTGCCACAGACAAGAGGACCAAGCCCTATGTCAAGAAGATGGCCAAAAGCCAGGACTACTTCTTCAAGGAGTTCACAAGAGCCTTCACCATTCTCTCCGAGAACAACCCTCTTACCGGAGACAAGGGAGAGATCAGGCAACAGTGCAATGTGGCCAACAAGCTCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

331

Amino Acids

37.6

Weight (kDa)

7.6

Isoelectric Point (pI)

51.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	47 - 291	2.2e-71	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21960
fragaria_vesca	FvH4_3g02090
malus_domestica	MD05G1345800.v1.1 MD10G1321200.v1.1
prunus_persica	Prupe.4G021100_v2.0.a1
pyrus_communis	pycom10g27190
rosa_chinensis	RchiOBHm_Chr5g0003181
rosa_laevigata	RLG00000031083
rosa_multiflora	Rmu_sc0000146.1_g000034
rosa_roxburghii	Rroxscaffold_1G00072830
rosa_rugosa	Rorug04G0401100
rosa_samantha	Rh5AG026000 Rh5BG027200 Rh5CG028800
rosa_wichuraiana	Rw5G002410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	221
Acc36I	ACCTGC	1 cut(s)	139
Acc65I	GGTACC	1 cut(s)	746
AccB1I	GGYRCC	1 cut(s)	746
AccI	GTMKAC	1 cut(s)	645
AclWI	GGATC	1 cut(s)	475
AcoI	YGGCCR	2 cut(s)	864, 975
AcsI	RAATTY	1 cut(s)	536
AcuI	CTGAAG	1 cut(s)	298
AdeI	CACNNNGTG	2 cut(s)	611, 613
AfaI	GTAC	5 cut(s)	320, 494, 635, 728, 748
AfiI	CCNNNNNNNGG	1 cut(s)	938
AflII	CTTAAG	1 cut(s)	683
AgsI	TTSAA	1 cut(s)	889
AjnI	CCWGG	4 cut(s)	85, 358, 562, 873
AluBI	AGCT	9 cut(s)	14, 157, 297, 476, 587, 619, 653, 823, 985
AluI	AGCT	9 cut(s)	14, 157, 297, 476, 587, 619, 653, 823, 985
Alw21I	GWGCWC	3 cut(s)	16, 589, 627
Alw26I	GTCTC	1 cut(s)	936
Alw44I	GTGCAC	1 cut(s)	623
AlwI	GGATC	1 cut(s)	475
AoxI	GGCC	2 cut(s)	864, 975
ApaLI	GTGCAC	1 cut(s)	623
ApoI	RAATTY	1 cut(s)	536
ArsI	GACNNNNNNTTYG	2 cut(s)	281, 313
Asp700I	GAANNNNTTC	1 cut(s)	206
Asp718I	GGTACC	1 cut(s)	746
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	3 cut(s)	425, 814, 840
AsuHPI	GGTGA	1 cut(s)	901
AvaII	GGWCC	3 cut(s)	425, 814, 840
AxyI	CCTNAGG	1 cut(s)	123
BaeGI	GKGCMC	2 cut(s)	627, 695
BaeI	ACNNNNGTAYC	2 cut(s)	730, 763
BalI	TGGCCA	2 cut(s)	866, 977
BanI	GGYRCC	1 cut(s)	746
BanII	GRGCYC	2 cut(s)	16, 589
BbsI	GAAGAC	1 cut(s)	87
Bbv12I	GWGCWC	3 cut(s)	16, 589, 627
BbvCI	CCTCAGC	1 cut(s)	129
BccI	CCATC	4 cut(s)	452, 710, 802, 856
BciT130I	CCWGG	4 cut(s)	87, 360, 564, 875
BcoDI	GTCTC	1 cut(s)	936
BfaI	CTAG	2 cut(s)	419, 991
BfmI	CTRYAG	2 cut(s)	106, 775
BfoI	RGCGCY	1 cut(s)	172
BfrI	CTTAAG	1 cut(s)	683
BfuAI	ACCTGC	1 cut(s)	139
Bme1390I	CCNGG	4 cut(s)	87, 360, 564, 875
Bme18I	GGWCC	3 cut(s)	425, 814, 840
BmgT120I	GGNCC	3 cut(s)	425, 814, 840
BmiI	GGNNCC	2 cut(s)	7, 748
BmrFI	CCNGG	4 cut(s)	87, 360, 564, 875
BmsI	GCATC	2 cut(s)	226, 688
BoxI	GACNNNNGTC	2 cut(s)	87, 117
BpiI	GAAGAC	1 cut(s)	87
BplI	GAGNNNNNCTC	2 cut(s)	524, 556
BpmI	CTGGAG	2 cut(s)	381, 585
Bpu10I	CCTNAGC	2 cut(s)	129, 197
BpuEI	CTTGAG	2 cut(s)	506, 551
BsaAI	YACGTR	1 cut(s)	730
BsaJI	CCNNGG	5 cut(s)	85, 546, 562, 714, 742
BsaWI	WCCGGW	1 cut(s)	938
BsaXI	ACNNNNNCTCC	2 cut(s)	445, 475
Bsc4I	CCNNNNNNNGG	1 cut(s)	938
Bse1I	ACTGG	3 cut(s)	226, 451, 724
Bse21I	CCTNAGG	1 cut(s)	123
Bse3DI	GCAATG	2 cut(s)	79, 976
BseBI	CCWGG	4 cut(s)	87, 360, 564, 875
BseDI	CCNNGG	5 cut(s)	85, 546, 562, 714, 742
BseGI	GGATG	3 cut(s)	309, 432, 702
BseLI	CCNNNNNNNGG	1 cut(s)	938
BseMI	GCAATG	2 cut(s)	79, 976
BseMII	CTCAG	8 cut(s)	57, 60, 120, 137, 211, 267, 390, 468
BseNI	ACTGG	3 cut(s)	226, 451, 724
BseRI	GAGGAG	3 cut(s)	146, 341, 503
BseSI	GKGCMC	2 cut(s)	627, 695
BseYI	CCCAGC	1 cut(s)	649
BshFI	GGCC	2 cut(s)	866, 977
BshNI	GGYRCC	1 cut(s)	746
BsiHKAI	GWGCWC	3 cut(s)	16, 589, 627
BsiSI	CCGG	1 cut(s)	939
BslFI	GGGAC	1 cut(s)	656
BslI	CCNNNNNNNGG	1 cut(s)	938
BsmAI	GTCTC	1 cut(s)	936
BsmFI	GGGAC	1 cut(s)	656
BsnI	GGCC	2 cut(s)	866, 977
Bsp1286I	GDGCHC	4 cut(s)	16, 589, 627, 695
Bsp143I	GATC	5 cut(s)	135, 330, 480, 756, 954
Bsp19I	CCATGG	1 cut(s)	546
BspANI	GGCC	2 cut(s)	866, 977
BspCNI	CTCAG	8 cut(s)	58, 59, 121, 136, 210, 268, 389, 469
BspLI	GGNNCC	2 cut(s)	7, 748
BspMI	ACCTGC	1 cut(s)	139
BspPI	GGATC	1 cut(s)	475
BspT107I	GGYRCC	1 cut(s)	746
BspTI	CTTAAG	1 cut(s)	683
BsrDI	GCAATG	2 cut(s)	79, 976
BsrI	ACTGG	3 cut(s)	226, 451, 724
BssECI	CCNNGG	5 cut(s)	85, 546, 562, 714, 742
BssMI	GATC	5 cut(s)	135, 330, 480, 756, 954
BssT1I	CCWWGG	2 cut(s)	546, 714
Bst2UI	CCWGG	4 cut(s)	87, 360, 564, 875
Bst4CI	ACNGT	7 cut(s)	218, 526, 593, 611, 629, 743, 966
Bst6I	CTCTTC	1 cut(s)	23
BstAFI	CTTAAG	1 cut(s)	683
BstBAI	YACGTR	1 cut(s)	730
BstC8I	GCNNGC	1 cut(s)	825
BstDEI	CTNAG	8 cut(s)	46, 66, 123, 129, 197, 276, 376, 477
BstDSI	CCRYGG	2 cut(s)	546, 742
BstF5I	GGATG	3 cut(s)	309, 432, 702
BstH2I	RGCGCY	1 cut(s)	172
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	5 cut(s)	138, 333, 483, 759, 957
BstMAI	GTCTC	1 cut(s)	936
BstMBI	GATC	5 cut(s)	135, 330, 480, 756, 954
BstMWI	GCNNNNNNNGC	1 cut(s)	154
BstNI	CCWGG	4 cut(s)	87, 360, 564, 875
BstNSI	RCATGY	2 cut(s)	520, 682
BstPAI	GACNNNNGTC	2 cut(s)	87, 117
BstSCI	CCNGG	4 cut(s)	85, 358, 562, 873
BstSFI	CTRYAG	2 cut(s)	106, 775
BstSLI	GKGCMC	2 cut(s)	627, 695
BstV2I	GAAGAC	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	480
BstYI	RGATCY	1 cut(s)	480
Bsu36I	CCTNAGG	1 cut(s)	123
BsuRI	GGCC	2 cut(s)	866, 977
BtgI	CCRYGG	2 cut(s)	546, 742
BtsCI	GGATG	3 cut(s)	309, 432, 702
BtsI	GCAGTG	2 cut(s)	57, 180
BtsIMutI	CAGTG	5 cut(s)	57, 180, 598, 607, 971
BveI	ACCTGC	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	825
CfoI	GCGC	1 cut(s)	171
Cfr13I	GGNCC	3 cut(s)	425, 814, 840
Csp6I	GTAC	5 cut(s)	319, 493, 634, 727, 747
CviAII	CATG	8 cut(s)	117, 212, 231, 517, 547, 668, 679, 754
CviQI	GTAC	5 cut(s)	319, 493, 634, 727, 747
DdeI	CTNAG	8 cut(s)	46, 66, 123, 129, 197, 276, 376, 477
DpnI	GATC	5 cut(s)	137, 332, 482, 758, 956
DpnII	GATC	5 cut(s)	135, 330, 480, 756, 954
DraIII	CACNNNGTG	2 cut(s)	611, 613
DrdI	GACNNNNNNGTC	1 cut(s)	221
DseDI	GACNNNNNNGTC	1 cut(s)	221
EaeI	YGGCCR	2 cut(s)	864, 975
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Ecl136II	GAGCTC	2 cut(s)	14, 587
Eco130I	CCWWGG	2 cut(s)	546, 714
Eco24I	GRGCYC	2 cut(s)	16, 589
Eco47I	GGWCC	3 cut(s)	425, 814, 840
Eco53kI	GAGCTC	2 cut(s)	14, 587
Eco57I	CTGAAG	1 cut(s)	298
Eco81I	CCTNAGG	1 cut(s)	123
EcoICRI	GAGCTC	2 cut(s)	14, 587
EcoRII	CCWGG	4 cut(s)	85, 358, 562, 873
EcoT14I	CCWWGG	2 cut(s)	546, 714
EcoT38I	GRGCYC	2 cut(s)	16, 589
ErhI	CCWWGG	2 cut(s)	546, 714
FaeI	CATG	8 cut(s)	120, 215, 234, 520, 550, 671, 682, 757
FalI	AAGNNNNNCTT	2 cut(s)	253, 285
FaqI	GGGAC	1 cut(s)	656
FatI	CATG	8 cut(s)	116, 211, 230, 516, 546, 667, 678, 753
FblI	GTMKAC	1 cut(s)	645
FokI	GGATG	3 cut(s)	316, 419, 689
FriOI	GRGCYC	2 cut(s)	16, 589
FspBI	CTAG	2 cut(s)	419, 991
GlaI	GCGC	1 cut(s)	170
GsaI	CCCAGC	1 cut(s)	653
GsuI	CTGGAG	2 cut(s)	381, 585
HaeII	RGCGCY	1 cut(s)	172
HaeIII	GGCC	2 cut(s)	866, 977
HapII	CCGG	1 cut(s)	939
HhaI	GCGC	1 cut(s)	171
Hin1II	CATG	8 cut(s)	120, 215, 234, 520, 550, 671, 682, 757
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HincII	GTYRAC	1 cut(s)	522
HindII	GTYRAC	1 cut(s)	522
HindIII	AAGCTT	2 cut(s)	155, 295
HinfI	GANTC	2 cut(s)	113, 254
HpaII	CCGG	1 cut(s)	939
HphI	GGTGA	1 cut(s)	901
Hpy166II	GTNNAC	5 cut(s)	522, 625, 646, 814, 897
Hpy188I	TCNGA	5 cut(s)	143, 277, 379, 657, 922
Hpy188III	TCNNGA	5 cut(s)	9, 199, 500, 530, 856
Hpy8I	GTNNAC	5 cut(s)	522, 625, 646, 814, 897
HpyAV	CCTTC	7 cut(s)	274, 398, 444, 459, 506, 587, 916
HpyCH4III	ACNGT	7 cut(s)	218, 526, 593, 611, 629, 743, 966
HpyCH4IV	ACGT	1 cut(s)	729
HpyCH4V	TGCA	2 cut(s)	625, 969
HpyF10VI	GCNNNNNNNGC	1 cut(s)	154
HpyF3I	CTNAG	8 cut(s)	46, 66, 123, 129, 197, 276, 376, 477
HpySE526I	ACGT	1 cut(s)	729
Hsp92II	CATG	8 cut(s)	120, 215, 234, 520, 550, 671, 682, 757
HspAI	GCGC	1 cut(s)	169
KpnI	GGTACC	1 cut(s)	750
Kzo9I	GATC	5 cut(s)	135, 330, 480, 756, 954
LmnI	GCTCC	3 cut(s)	468, 584, 990
LweI	GCATC	2 cut(s)	226, 688
MaeI	CTAG	2 cut(s)	419, 991
MaeII	ACGT	1 cut(s)	729
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	5 cut(s)	137, 332, 482, 758, 956
MboI	GATC	5 cut(s)	135, 330, 480, 756, 954
MflI	RGATCY	1 cut(s)	480
MhlI	GDGCHC	4 cut(s)	16, 589, 627, 695
MlsI	TGGCCA	2 cut(s)	866, 977
MluCI	AATT	1 cut(s)	536
MluNI	TGGCCA	2 cut(s)	866, 977
MlyI	GAGTC	2 cut(s)	107, 248
MmeI	TCCRAC	1 cut(s)	577
Mox20I	TGGCCA	2 cut(s)	866, 977
MroXI	GAANNNNTTC	1 cut(s)	206
MscI	TGGCCA	2 cut(s)	866, 977
MseI	TTAA	2 cut(s)	441, 684
MslI	CAYNNNNRTG	1 cut(s)	216
Msp20I	TGGCCA	2 cut(s)	866, 977
MspCI	CTTAAG	1 cut(s)	683
MspI	CCGG	1 cut(s)	939
MspR9I	CCNGG	4 cut(s)	87, 360, 564, 875
MvaI	CCWGG	4 cut(s)	87, 360, 564, 875
MwoI	GCNNNNNNNGC	1 cut(s)	154
NcoI	CCATGG	1 cut(s)	546
NdeII	GATC	5 cut(s)	135, 330, 480, 756, 954
NlaIII	CATG	8 cut(s)	120, 215, 234, 520, 550, 671, 682, 757
NlaIV	GGNNCC	2 cut(s)	7, 748
NmuCI	GTSAC	1 cut(s)	110
NspI	RCATGY	2 cut(s)	520, 682
PdmI	GAANNNNTTC	1 cut(s)	206
PflFI	GACNNNGTC	1 cut(s)	668
PfoI	TCCNGGA	1 cut(s)	358
PleI	GAGTC	2 cut(s)	107, 248
PpsI	GAGTC	2 cut(s)	107, 248
Ppu21I	YACGTR	1 cut(s)	730
PshAI	GACNNNNGTC	2 cut(s)	87, 117
Psp124BI	GAGCTC	2 cut(s)	16, 589
Psp6I	CCWGG	4 cut(s)	85, 358, 562, 873
PspFI	CCCAGC	1 cut(s)	649
PspGI	CCWGG	4 cut(s)	85, 358, 562, 873
PspN4I	GGNNCC	2 cut(s)	7, 748
PspPI	GGNCC	3 cut(s)	425, 814, 840
PsuI	RGATCY	1 cut(s)	480
PsyI	GACNNNGTC	1 cut(s)	668
RsaI	GTAC	5 cut(s)	320, 494, 635, 728, 748
RsaNI	GTAC	5 cut(s)	319, 493, 634, 727, 747
RseI	CAYNNNNRTG	1 cut(s)	216
SacI	GAGCTC	2 cut(s)	16, 589
SaqAI	TTAA	2 cut(s)	441, 684
Sau3AI	GATC	5 cut(s)	135, 330, 480, 756, 954
Sau96I	GGNCC	3 cut(s)	425, 814, 840
SchI	GAGTC	2 cut(s)	107, 248
ScrFI	CCNGG	4 cut(s)	87, 360, 564, 875
SduI	GDGCHC	4 cut(s)	16, 589, 627, 695
SfaNI	GCATC	2 cut(s)	226, 688
SfcI	CTRYAG	2 cut(s)	106, 775
SinI	GGWCC	3 cut(s)	425, 814, 840
SmiMI	CAYNNNNRTG	1 cut(s)	216
SmlI	CTYRAG	3 cut(s)	485, 530, 683
SmoI	CTYRAG	3 cut(s)	485, 530, 683
Sse9I	AATT	1 cut(s)	536
SspMI	CTAG	2 cut(s)	419, 991
SstI	GAGCTC	2 cut(s)	16, 589
StyD4I	CCNGG	4 cut(s)	85, 358, 562, 873
StyI	CCWWGG	2 cut(s)	546, 714
TaaI	ACNGT	7 cut(s)	218, 526, 593, 611, 629, 743, 966
TaiI	ACGT	1 cut(s)	732
TaqI	TCGA	1 cut(s)	762
TasI	AATT	1 cut(s)	536
Tru1I	TTAA	2 cut(s)	441, 684
Tru9I	TTAA	2 cut(s)	441, 684
TscAI	CASTG	5 cut(s)	57, 187, 598, 614, 971
TseFI	GTSAC	1 cut(s)	110
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	3 cut(s)	90, 113, 421
TspRI	CASTG	5 cut(s)	57, 187, 598, 614, 971
Tth111I	GACNNNGTC	1 cut(s)	668
Vha464I	CTTAAG	1 cut(s)	683
VneI	GTGCAC	1 cut(s)	623
VpaK11BI	GGWCC	3 cut(s)	425, 814, 840
XapI	RAATTY	1 cut(s)	536
XceI	RCATGY	2 cut(s)	520, 682
XmiI	GTMKAC	1 cut(s)	645
XmnI	GAANNNNTTC	1 cut(s)	206
XspI	CTAG	2 cut(s)	419, 991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.