Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0015992

Physical Location & Seq

Genomic Coordinates Reverse (-)

46533897 .. 46536242

Gene Structure 2346 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1345800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCTTCTTCTTCTTCTTCCAGAATTCTCTTCTTCTTCTTTGCTTTGCTTTCTCTCTCAGCAGTTTCTTGCTTTGCTGAGAGCAATGAGCAGGATCCAGGTCTTGTCACCGACTTCTACAGGGACACGTGTCCTCAGGCTGAAGAGGTGATCAGAGAACAAGTCAAGCTTCTCTACAAGCGCCACAAGAACACCGCCTTCTCTTGGCTCAGAAACATCTTTCACGACTGTGCTGTCCAGTCATGTGATGCATCTCTGCTGCTGGACTCAACAAGGAGATCGTTGTCTGAGAAGGAGATGGACAGGAGCTTCGGTATGAGAAACTTTAGGTACATTGAAGAGATTAAAGAAGCTTTGGAGAGGGAGTGCCCTGGTGTTGTTTCCTGCTCAGATATTCTTGTCTTGTCTGCAAGAGAGGGTGTTGTTAGGCTAGGAGGCCCATTCATTCCTCTTAAAACTGGAAGAAGAGATGGAAGGAGAAGCAGAGCTGAGATCCTTGAGCAATACCTTCCTGACCACAATGAGAGCATGTCCGTTGTCCTTGAGAAGTTTGCTGACATGGGCATTGACACCCCCGGTGTGGTCGCCCTTCTAGGAGCTCACAGCGTTGGAAGAACACACTGTGTGAAGCTGGTGCACCGGTTGTACCCAGAGGTTGACCCTCAGCTCAACCCTGATCATGTCCCTCACATGCTCAAGAAGTGCCCTGATGCTATCCCCGACCCCAAAGCCGTTCAGTACGTGAGAAATGACCGTGGTACCCCCATGATCTTCGATAATAACTACTACAGAAACATCTTGGACAACAAGGGTTTGATGATGGTGGACCACCAGCTAGCCACGGACAAGAGGACAAAACCCTACGTCAAGAAAATGGCCAAGAGCCAAGACTACTTCTTCAAGGAGTTTTCGAGAGCCTTCACCATTCTCTCCGAGAACAACCCTCTCACTGGAAACAAGGGCGAGATCCGACAGCAGTGCAATGTTGCCAACAAGATCCGCGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

336

Amino Acids

38.23

Weight (kDa)

8.3

Isoelectric Point (pI)

52.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	51 - 295	3.2e-71	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21960
fragaria_vesca	FvH4_3g02090
malus_domestica	MD05G1345800.v1.1 MD10G1321200.v1.1
prunus_persica	Prupe.4G021100_v2.0.a1
pyrus_communis	pycom10g27190
rosa_chinensis	RchiOBHm_Chr5g0003181
rosa_laevigata	RLG00000031083
rosa_multiflora	Rmu_sc0000146.1_g000034
rosa_roxburghii	Rroxscaffold_1G00072830
rosa_rugosa	Rorug04G0401100
rosa_samantha	Rh5AG026000 Rh5BG027200 Rh5CG028800
rosa_wichuraiana	Rw5G002410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	233
Acc65I	GGTACC	1 cut(s)	758
AccB1I	GGYRCC	1 cut(s)	758
AccII	CGCG	1 cut(s)	1002
AciI	CCGC	2 cut(s)	195, 1000
AclWI	GGATC	5 cut(s)	89, 102, 487, 961, 991
AcoI	YGGCCR	1 cut(s)	876
AcsI	RAATTY	1 cut(s)	24
AcuI	CTGAAG	1 cut(s)	162
AcvI	CACGTG	1 cut(s)	129
AdeI	CACNNNGTG	2 cut(s)	623, 625
AfaI	GTAC	4 cut(s)	332, 647, 740, 760
AfiI	CCNNNNNNNGG	3 cut(s)	204, 580, 950
AflIII	ACRYGT	2 cut(s)	126, 128
AgeI	ACCGGT	1 cut(s)	639
AgsI	TTSAA	2 cut(s)	338, 901
AjnI	CCWGG	2 cut(s)	97, 370
AleI	CACNNNNGTG	1 cut(s)	228
AluBI	AGCT	8 cut(s)	169, 309, 353, 488, 599, 631, 667, 835
AluI	AGCT	8 cut(s)	169, 309, 353, 488, 599, 631, 667, 835
Alw21I	GWGCWC	2 cut(s)	601, 639
Alw44I	GTGCAC	1 cut(s)	635
AlwI	GGATC	5 cut(s)	89, 102, 487, 961, 991
AoxI	GGCC	2 cut(s)	436, 876
ApaLI	GTGCAC	1 cut(s)	635
ApeKI	GCWGC	1 cut(s)	259
ApoI	RAATTY	1 cut(s)	24
ArsI	GACNNNNNNTTYG	2 cut(s)	293, 325
AsiGI	ACCGGT	1 cut(s)	639
Asp718I	GGTACC	1 cut(s)	758
AspLEI	GCGC	1 cut(s)	183
AspS9I	GGNCC	2 cut(s)	437, 826
AsuC2I	CCSGG	1 cut(s)	576
AsuHPI	GGTGA	3 cut(s)	100, 160, 913
AsuNHI	GCTAGC	1 cut(s)	835
AvaII	GGWCC	1 cut(s)	826
AxyI	CCTNAGG	1 cut(s)	135
BaeGI	GKGCMC	3 cut(s)	371, 639, 707
BaeI	ACNNNNGTAYC	2 cut(s)	742, 775
BalI	TGGCCA	1 cut(s)	878
BamHI	GGATCC	1 cut(s)	94
BanI	GGYRCC	1 cut(s)	758
BanII	GRGCYC	1 cut(s)	601
BbrPI	CACGTG	1 cut(s)	129
Bbv12I	GWGCWC	2 cut(s)	601, 639
BbvCI	CCTCAGC	1 cut(s)	663
BbvI	GCAGC	1 cut(s)	246
BccI	CCATC	3 cut(s)	292, 464, 814
BceAI	ACGGC	1 cut(s)	716
BcgI	CGANNNNNNTGC	2 cut(s)	960, 994
BciT130I	CCWGG	2 cut(s)	99, 372
BclI	TGATCA	2 cut(s)	150, 676
BcnI	CCSGG	1 cut(s)	576
BfaI	CTAG	4 cut(s)	431, 593, 836, 1006
BfmI	CTRYAG	2 cut(s)	118, 787
BfoI	RGCGCY	1 cut(s)	184
BisI	GCNGC	1 cut(s)	260
BlsI	GCNGC	1 cut(s)	261
Bme1390I	CCNGG	3 cut(s)	99, 372, 576
Bme18I	GGWCC	1 cut(s)	826
BmgT120I	GGNCC	2 cut(s)	437, 826
BmiI	GGNNCC	2 cut(s)	96, 760
BmrFI	CCNGG	3 cut(s)	99, 372, 576
BmsI	GCATC	3 cut(s)	238, 260, 700
BmtI	GCTAGC	1 cut(s)	839
BoxI	GACNNNNGTC	1 cut(s)	129
Bpu10I	CCTNAGC	1 cut(s)	663
BpuEI	CTTGAG	3 cut(s)	518, 563, 680
BpuMI	CCSGG	1 cut(s)	576
BsaAI	YACGTR	2 cut(s)	129, 742
BsaJI	CCNNGG	4 cut(s)	370, 574, 754, 840
BsaWI	WCCGGW	1 cut(s)	639
BsaXI	ACNNNNNCTCC	4 cut(s)	298, 328, 350, 380
Bsc4I	CCNNNNNNNGG	3 cut(s)	204, 580, 950
Bse118I	RCCGGY	1 cut(s)	639
Bse1I	ACTGG	3 cut(s)	238, 463, 955
Bse21I	CCTNAGG	1 cut(s)	135
Bse3DI	GCAATG	2 cut(s)	91, 988
BseBI	CCWGG	2 cut(s)	99, 372
BseDI	CCNNGG	4 cut(s)	370, 574, 754, 840
BseLI	CCNNNNNNNGG	3 cut(s)	204, 580, 950
BseMI	GCAATG	2 cut(s)	91, 988
BseMII	CTCAG	8 cut(s)	69, 72, 149, 223, 279, 402, 480, 677
BseNI	ACTGG	3 cut(s)	238, 463, 955
BseSI	GKGCMC	3 cut(s)	371, 639, 707
BseXI	GCAGC	1 cut(s)	246
Bsh1236I	CGCG	1 cut(s)	1002
BshFI	GGCC	2 cut(s)	438, 878
BshNI	GGYRCC	1 cut(s)	758
BshTI	ACCGGT	1 cut(s)	639
BsiHKAI	GWGCWC	2 cut(s)	601, 639
BsiSI	CCGG	2 cut(s)	576, 640
BslFI	GGGAC	2 cut(s)	137, 668
BslI	CCNNNNNNNGG	3 cut(s)	204, 580, 950
BsmFI	GGGAC	2 cut(s)	137, 668
BsnI	GGCC	2 cut(s)	438, 878
Bsp1286I	GDGCHC	4 cut(s)	371, 601, 639, 707
Bsp143I	GATC	8 cut(s)	94, 150, 278, 492, 676, 768, 966, 996
BspACI	CCGC	2 cut(s)	195, 1000
BspANI	GGCC	2 cut(s)	438, 878
BspCNI	CTCAG	8 cut(s)	70, 71, 148, 222, 280, 401, 481, 676
BspFNI	CGCG	1 cut(s)	1002
BspLI	GGNNCC	2 cut(s)	96, 760
BspOI	GCTAGC	1 cut(s)	839
BspPI	GGATC	5 cut(s)	89, 102, 487, 961, 991
BspT107I	GGYRCC	1 cut(s)	758
BsrDI	GCAATG	2 cut(s)	91, 988
BsrFI	RCCGGY	1 cut(s)	639
BsrI	ACTGG	3 cut(s)	238, 463, 955
BssAI	RCCGGY	1 cut(s)	639
BssECI	CCNNGG	4 cut(s)	370, 574, 754, 840
BssMI	GATC	8 cut(s)	94, 150, 278, 492, 676, 768, 966, 996
Bst2UI	CCWGG	2 cut(s)	99, 372
Bst4CI	ACNGT	3 cut(s)	230, 623, 755
Bst6I	CTCTTC	4 cut(s)	35, 138, 333, 460
BstBAI	YACGTR	2 cut(s)	129, 742
BstC8I	GCNNGC	1 cut(s)	837
BstDEI	CTNAG	8 cut(s)	58, 78, 135, 209, 288, 388, 489, 663
BstDSI	CCRYGG	2 cut(s)	754, 840
BstFNI	CGCG	1 cut(s)	1002
BstH2I	RGCGCY	1 cut(s)	184
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	8 cut(s)	97, 153, 281, 495, 679, 771, 969, 999
BstMBI	GATC	8 cut(s)	94, 150, 278, 492, 676, 768, 966, 996
BstNI	CCWGG	2 cut(s)	99, 372
BstNSI	RCATGY	2 cut(s)	532, 694
BstPAI	GACNNNNGTC	1 cut(s)	129
BstSCI	CCNGG	3 cut(s)	97, 370, 574
BstSFI	CTRYAG	2 cut(s)	118, 787
BstSLI	GKGCMC	3 cut(s)	371, 639, 707
BstUI	CGCG	1 cut(s)	1002
BstV1I	GCAGC	1 cut(s)	246
BstX2I	RGATCY	4 cut(s)	94, 492, 966, 996
BstYI	RGATCY	4 cut(s)	94, 492, 966, 996
Bsu36I	CCTNAGG	1 cut(s)	135
BsuRI	GGCC	2 cut(s)	438, 878
BtgI	CCRYGG	2 cut(s)	754, 840
BtsI	GCAGTG	1 cut(s)	983
BtsIMutI	CAGTG	3 cut(s)	619, 948, 983
Cac8I	GCNNGC	1 cut(s)	837
CfoI	GCGC	1 cut(s)	183
Cfr10I	RCCGGY	1 cut(s)	639
Cfr13I	GGNCC	2 cut(s)	437, 826
Csp6I	GTAC	4 cut(s)	331, 646, 739, 759
CspAI	ACCGGT	1 cut(s)	639
CviAII	CATG	6 cut(s)	243, 529, 559, 680, 691, 766
CviQI	GTAC	4 cut(s)	331, 646, 739, 759
DdeI	CTNAG	8 cut(s)	58, 78, 135, 209, 288, 388, 489, 663
DpnI	GATC	8 cut(s)	96, 152, 280, 494, 678, 770, 968, 998
DpnII	GATC	8 cut(s)	94, 150, 278, 492, 676, 768, 966, 996
DraIII	CACNNNGTG	2 cut(s)	623, 625
DrdI	GACNNNNNNGTC	1 cut(s)	233
DseDI	GACNNNNNNGTC	1 cut(s)	233
EaeI	YGGCCR	1 cut(s)	876
Eam1104I	CTCTTC	4 cut(s)	35, 138, 333, 460
EarI	CTCTTC	4 cut(s)	35, 138, 333, 460
Ecl136II	GAGCTC	1 cut(s)	599
Eco24I	GRGCYC	1 cut(s)	601
Eco47I	GGWCC	1 cut(s)	826
Eco53kI	GAGCTC	1 cut(s)	599
Eco57I	CTGAAG	1 cut(s)	162
Eco72I	CACGTG	1 cut(s)	129
Eco81I	CCTNAGG	1 cut(s)	135
EcoICRI	GAGCTC	1 cut(s)	599
EcoRI	GAATTC	1 cut(s)	24
EcoRII	CCWGG	2 cut(s)	97, 370
EcoT22I	ATGCAT	1 cut(s)	253
EcoT38I	GRGCYC	1 cut(s)	601
FaeI	CATG	6 cut(s)	246, 532, 562, 683, 694, 769
FaiI	YATR	7 cut(s)	244, 317, 530, 560, 681, 692, 767
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FaqI	GGGAC	2 cut(s)	137, 668
FatI	CATG	6 cut(s)	242, 528, 558, 679, 690, 765
FbaI	TGATCA	2 cut(s)	150, 676
Fnu4HI	GCNGC	1 cut(s)	260
FriOI	GRGCYC	1 cut(s)	601
Fsp4HI	GCNGC	1 cut(s)	260
FspBI	CTAG	4 cut(s)	431, 593, 836, 1006
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	1 cut(s)	260
HaeII	RGCGCY	1 cut(s)	184
HaeIII	GGCC	2 cut(s)	438, 878
HapII	CCGG	2 cut(s)	576, 640
HhaI	GCGC	1 cut(s)	183
Hin1II	CATG	6 cut(s)	246, 532, 562, 683, 694, 769
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HincII	GTYRAC	1 cut(s)	658
HindII	GTYRAC	1 cut(s)	658
HindIII	AAGCTT	2 cut(s)	167, 351
HinfI	GANTC	1 cut(s)	266
HpaII	CCGG	2 cut(s)	576, 640
HphI	GGTGA	3 cut(s)	100, 160, 913
Hpy166II	GTNNAC	3 cut(s)	637, 658, 826
Hpy188I	TCNGA	6 cut(s)	155, 212, 289, 391, 934, 971
Hpy188III	TCNNGA	6 cut(s)	21, 224, 512, 697, 868, 912
Hpy8I	GTNNAC	3 cut(s)	637, 658, 826
HpyAV	CCTTC	6 cut(s)	208, 286, 468, 518, 599, 928
HpyCH4III	ACNGT	3 cut(s)	230, 623, 755
HpyCH4IV	ACGT	3 cut(s)	128, 741, 864
HpyCH4V	TGCA	4 cut(s)	251, 410, 637, 981
HpyF3I	CTNAG	8 cut(s)	58, 78, 135, 209, 288, 388, 489, 663
HpySE526I	ACGT	3 cut(s)	128, 741, 864
Hsp92II	CATG	6 cut(s)	246, 532, 562, 683, 694, 769
HspAI	GCGC	1 cut(s)	181
KpnI	GGTACC	1 cut(s)	762
Ksp22I	TGATCA	2 cut(s)	150, 676
Kzo9I	GATC	8 cut(s)	94, 150, 278, 492, 676, 768, 966, 996
LmnI	GCTCC	2 cut(s)	306, 596
Lsp1109I	GCAGC	1 cut(s)	246
LweI	GCATC	3 cut(s)	238, 260, 700
MaeI	CTAG	4 cut(s)	431, 593, 836, 1006
MaeII	ACGT	3 cut(s)	128, 741, 864
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	8 cut(s)	96, 152, 280, 494, 678, 770, 968, 998
MboI	GATC	8 cut(s)	94, 150, 278, 492, 676, 768, 966, 996
MflI	RGATCY	4 cut(s)	94, 492, 966, 996
MhlI	GDGCHC	4 cut(s)	371, 601, 639, 707
MlsI	TGGCCA	1 cut(s)	878
MluCI	AATT	1 cut(s)	24
MluNI	TGGCCA	1 cut(s)	878
MlyI	GAGTC	1 cut(s)	260
MmeI	TCCRAC	2 cut(s)	589, 994
Mox20I	TGGCCA	1 cut(s)	878
Mph1103I	ATGCAT	1 cut(s)	253
MscI	TGGCCA	1 cut(s)	878
MseI	TTAA	2 cut(s)	345, 453
MslI	CAYNNNNRTG	1 cut(s)	228
Msp20I	TGGCCA	1 cut(s)	878
MspI	CCGG	2 cut(s)	576, 640
MspR9I	CCNGG	3 cut(s)	99, 372, 576
MvaI	CCWGG	2 cut(s)	99, 372
MvnI	CGCG	1 cut(s)	1002
NciI	CCSGG	1 cut(s)	576
NdeII	GATC	8 cut(s)	94, 150, 278, 492, 676, 768, 966, 996
NheI	GCTAGC	1 cut(s)	835
NlaIII	CATG	6 cut(s)	246, 532, 562, 683, 694, 769
NlaIV	GGNNCC	2 cut(s)	96, 760
NmuCI	GTSAC	1 cut(s)	106
NsiI	ATGCAT	1 cut(s)	253
NspI	RCATGY	2 cut(s)	532, 694
OliI	CACNNNNGTG	1 cut(s)	228
PinAI	ACCGGT	1 cut(s)	639
PkrI	GCNGC	1 cut(s)	261
PleI	GAGTC	1 cut(s)	260
PmaCI	CACGTG	1 cut(s)	129
PmlI	CACGTG	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	260
Ppu21I	YACGTR	2 cut(s)	129, 742
PshAI	GACNNNNGTC	1 cut(s)	129
Psp124BI	GAGCTC	1 cut(s)	601
Psp6I	CCWGG	2 cut(s)	97, 370
PspCI	CACGTG	1 cut(s)	129
PspGI	CCWGG	2 cut(s)	97, 370
PspN4I	GGNNCC	2 cut(s)	96, 760
PspPI	GGNCC	2 cut(s)	437, 826
PsuI	RGATCY	4 cut(s)	94, 492, 966, 996
RsaI	GTAC	4 cut(s)	332, 647, 740, 760
RsaNI	GTAC	4 cut(s)	331, 646, 739, 759
RseI	CAYNNNNRTG	1 cut(s)	228
SacI	GAGCTC	1 cut(s)	601
SaqAI	TTAA	2 cut(s)	345, 453
SatI	GCNGC	1 cut(s)	260
Sau3AI	GATC	8 cut(s)	94, 150, 278, 492, 676, 768, 966, 996
Sau96I	GGNCC	2 cut(s)	437, 826
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	3 cut(s)	99, 372, 576
SduI	GDGCHC	4 cut(s)	371, 601, 639, 707
SfaNI	GCATC	3 cut(s)	238, 260, 700
SfcI	CTRYAG	2 cut(s)	118, 787
SinI	GGWCC	1 cut(s)	826
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	3 cut(s)	497, 542, 695
SmoI	CTYRAG	3 cut(s)	497, 542, 695
Sse9I	AATT	1 cut(s)	24
SsiI	CCGC	2 cut(s)	195, 1000
SspMI	CTAG	4 cut(s)	431, 593, 836, 1006
SstI	GAGCTC	1 cut(s)	601
StyD4I	CCNGG	3 cut(s)	97, 370, 574
TaaI	ACNGT	3 cut(s)	230, 623, 755
TaiI	ACGT	3 cut(s)	131, 744, 867
TaqI	TCGA	2 cut(s)	774, 911
TasI	AATT	1 cut(s)	24
Tru1I	TTAA	2 cut(s)	345, 453
Tru9I	TTAA	2 cut(s)	345, 453
TscAI	CASTG	3 cut(s)	626, 955, 983
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	1 cut(s)	259
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	1 cut(s)	433
TspGWI	ACGGA	2 cut(s)	523, 857
TspRI	CASTG	3 cut(s)	626, 955, 983
VneI	GTGCAC	1 cut(s)	635
VpaK11BI	GGWCC	1 cut(s)	826
XapI	RAATTY	1 cut(s)	24
XceI	RCATGY	2 cut(s)	532, 694
XspI	CTAG	4 cut(s)	431, 593, 836, 1006
Zsp2I	ATGCAT	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.