Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0015992

Physical Location & Seq

Genomic Coordinates Forward (+)

2116967 .. 2118325

Gene Structure 1359 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G002410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGGTTCCAGAGCTCTCTTCTTCTTTGCTTTGCTATCTCTCTCAGCAGTGCTTTGCTTTGCTGAGAGCAATGAGGAAGACCCAGGTCTTGTTATGAACTTCTACAGTGACTCATGTCCTCAGGCTGAAGATATCGTCAGAGAGCAGGTCAAGCTCCTCTACAAGCGCCACAAGAACACTGCTTTCTCTTGGCTCAGAAACATCTTCCATGACTGTGCTGTCCAGTCATGTGATGCTTCACTACTTTTGGACTCAACAAGGAGGTCTTTGTCTGAGAAAGAAATGGACAGAAGCTTTGGGATGAGAAATTTTAGGTACATTGAAGAGATCAAAGAAGCAATAGAGAGGGAGTGCCCTGGAGTTGTTTCTTGCTCAGATATTCTTCTAGGAGGCCCATTTATTCCTCTTAAAACTGGAAGGAGAGATGGTAGAAGGAGCAGAGCAGAGATCCTTGAGGAGTACCTTCCTGACCACAATGAGAGCATGTCAACTGTTCTTGAGAAGTTCTCTGCCATGGGCATTGACACCCCTGGAGTTGTTGCTCTTCTAGGAGCTCATAGTGTTGGAAGAACACACTGTGTGAAGTTGGTACACCGTTTGTACCCAGAAGTTGACCCAGCTCTGAACCCAGACCACGTCCCCCACATGCTCAAGAAGTGCCCTGATGCTATCCCTGACCCCAAGGCAGTCCAGTACGTGAGAAATGACCGTGGTACCCCCATGATCTTCGACAACAACTACTACAGGAACATCTTGGACAACAAGGGTTTGATGATGGTGGATCACCAGCTTGCTACAGACAAAAGGACCAAGCCCTATGTCAAGAAAATGGCCAAAAGCCAAGACTACTTCTTCAAGGAGTTCACAAGAGCCTTCACCATTCTCTCCGAGAACAACCCTCTCACCGGAGACAAGGGCGAGATCAGGCAACAGTGCAATGTGGCCAACAAGCTCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

319

Amino Acids

36.37

Weight (kDa)

7.13

Isoelectric Point (pI)

53.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	46 - 280	3.8e-62	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21960
fragaria_vesca	FvH4_3g02090
malus_domestica	MD05G1345800.v1.1 MD10G1321200.v1.1
prunus_persica	Prupe.4G021100_v2.0.a1
pyrus_communis	pycom10g27190
rosa_chinensis	RchiOBHm_Chr5g0003181
rosa_laevigata	RLG00000031083
rosa_multiflora	Rmu_sc0000146.1_g000034
rosa_roxburghii	Rroxscaffold_1G00072830
rosa_rugosa	Rorug04G0401100
rosa_samantha	Rh5AG026000 Rh5BG027200 Rh5CG028800
rosa_wichuraiana	Rw5G002410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	218
Acc36I	ACCTGC	1 cut(s)	136
Acc65I	GGTACC	1 cut(s)	713
AccB1I	GGYRCC	1 cut(s)	713
AclWI	GGATC	2 cut(s)	442, 789
AcoI	YGGCCR	2 cut(s)	831, 942
AcsI	RAATTY	1 cut(s)	307
AcuI	CTGAAG	1 cut(s)	147
AdeI	CACNNNGTG	2 cut(s)	578, 580
AfaI	GTAC	6 cut(s)	317, 461, 591, 602, 695, 715
AfiI	CCNNNNNNNGG	1 cut(s)	905
AgsI	TTSAA	2 cut(s)	323, 856
AjiI	CACGTC	1 cut(s)	637
AjnI	CCWGG	3 cut(s)	82, 355, 529
AluBI	AGCT	7 cut(s)	14, 154, 294, 554, 620, 790, 952
AluI	AGCT	7 cut(s)	14, 154, 294, 554, 620, 790, 952
Alw21I	GWGCWC	2 cut(s)	16, 556
Alw26I	GTCTC	1 cut(s)	903
AlwI	GGATC	2 cut(s)	442, 789
AoxI	GGCC	3 cut(s)	391, 831, 942
ApoI	RAATTY	1 cut(s)	307
ArsI	GACNNNNNNTTYG	2 cut(s)	278, 310
Asp718I	GGTACC	1 cut(s)	713
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	2 cut(s)	392, 807
AsuHPI	GGTGA	3 cut(s)	776, 868, 895
AvaII	GGWCC	1 cut(s)	807
AxyI	CCTNAGG	1 cut(s)	120
BaeGI	GKGCMC	2 cut(s)	356, 662
BaeI	ACNNNNGTAYC	2 cut(s)	697, 730
BalI	TGGCCA	2 cut(s)	833, 944
BanI	GGYRCC	1 cut(s)	713
BanII	GRGCYC	2 cut(s)	16, 556
BbsI	GAAGAC	1 cut(s)	84
Bbv12I	GWGCWC	2 cut(s)	16, 556
BccI	CCATC	2 cut(s)	419, 769
BciT130I	CCWGG	3 cut(s)	84, 357, 531
BcoDI	GTCTC	1 cut(s)	903
BfaI	CTAG	3 cut(s)	386, 548, 958
BfmI	CTRYAG	3 cut(s)	103, 742, 795
BfoI	RGCGCY	1 cut(s)	169
BfuAI	ACCTGC	1 cut(s)	136
Bme1390I	CCNGG	3 cut(s)	84, 357, 531
Bme18I	GGWCC	1 cut(s)	807
BmgBI	CACGTC	1 cut(s)	637
BmgT120I	GGNCC	2 cut(s)	392, 807
BmiI	GGNNCC	2 cut(s)	7, 715
BmrFI	CCNGG	3 cut(s)	84, 357, 531
BmsI	GCATC	2 cut(s)	223, 655
BoxI	GACNNNNGTC	2 cut(s)	84, 114
BpiI	GAAGAC	1 cut(s)	84
BplI	GAGNNNNNCTC	2 cut(s)	491, 523
BpmI	CTGGAG	2 cut(s)	378, 552
BpuEI	CTTGAG	3 cut(s)	473, 518, 635
BsaAI	YACGTR	1 cut(s)	697
BsaJI	CCNNGG	6 cut(s)	82, 355, 513, 529, 681, 709
BsaWI	WCCGGW	1 cut(s)	905
BsaXI	ACNNNNNCTCC	2 cut(s)	412, 442
Bsc4I	CCNNNNNNNGG	1 cut(s)	905
Bse1I	ACTGG	3 cut(s)	223, 418, 691
Bse21I	CCTNAGG	1 cut(s)	120
Bse3DI	GCAATG	2 cut(s)	76, 943
BseBI	CCWGG	3 cut(s)	84, 357, 531
BseDI	CCNNGG	6 cut(s)	82, 355, 513, 529, 681, 709
BseGI	GGATG	1 cut(s)	306
BseLI	CCNNNNNNNGG	1 cut(s)	905
BseMI	GCAATG	2 cut(s)	76, 943
BseMII	CTCAG	6 cut(s)	54, 57, 134, 208, 264, 387
BseNI	ACTGG	3 cut(s)	223, 418, 691
BseRI	GAGGAG	2 cut(s)	146, 470
BseSI	GKGCMC	2 cut(s)	356, 662
BseYI	CCCAGC	1 cut(s)	616
BshFI	GGCC	3 cut(s)	393, 833, 944
BshNI	GGYRCC	1 cut(s)	713
BsiHKAI	GWGCWC	2 cut(s)	16, 556
BsiSI	CCGG	1 cut(s)	906
BslFI	GGGAC	1 cut(s)	623
BslI	CCNNNNNNNGG	1 cut(s)	905
BsmAI	GTCTC	1 cut(s)	903
BsmFI	GGGAC	1 cut(s)	623
BsnI	GGCC	3 cut(s)	393, 833, 944
Bsp1286I	GDGCHC	4 cut(s)	16, 356, 556, 662
Bsp143I	GATC	5 cut(s)	327, 447, 723, 781, 921
Bsp19I	CCATGG	1 cut(s)	513
BspANI	GGCC	3 cut(s)	393, 833, 944
BspCNI	CTCAG	6 cut(s)	55, 56, 133, 207, 265, 386
BspLI	GGNNCC	2 cut(s)	7, 715
BspMI	ACCTGC	1 cut(s)	136
BspPI	GGATC	2 cut(s)	442, 789
BspQI	GCTCTTC	1 cut(s)	549
BspT107I	GGYRCC	1 cut(s)	713
BsrDI	GCAATG	2 cut(s)	76, 943
BsrI	ACTGG	3 cut(s)	223, 418, 691
BssECI	CCNNGG	6 cut(s)	82, 355, 513, 529, 681, 709
BssMI	GATC	5 cut(s)	327, 447, 723, 781, 921
BssT1I	CCWWGG	2 cut(s)	513, 681
Bst2UI	CCWGG	3 cut(s)	84, 357, 531
Bst4CI	ACNGT	7 cut(s)	107, 215, 493, 578, 596, 710, 933
Bst6I	CTCTTC	3 cut(s)	23, 318, 549
BstBAI	YACGTR	1 cut(s)	697
BstC8I	GCNNGC	1 cut(s)	792
BstDEI	CTNAG	6 cut(s)	43, 63, 120, 194, 273, 373
BstDSI	CCRYGG	2 cut(s)	513, 709
BstF5I	GGATG	1 cut(s)	306
BstH2I	RGCGCY	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	5 cut(s)	330, 450, 726, 784, 924
BstMAI	GTCTC	1 cut(s)	903
BstMBI	GATC	5 cut(s)	327, 447, 723, 781, 921
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstNI	CCWGG	3 cut(s)	84, 357, 531
BstNSI	RCATGY	2 cut(s)	487, 649
BstPAI	GACNNNNGTC	2 cut(s)	84, 114
BstSCI	CCNGG	3 cut(s)	82, 355, 529
BstSFI	CTRYAG	3 cut(s)	103, 742, 795
BstSLI	GKGCMC	2 cut(s)	356, 662
BstV2I	GAAGAC	1 cut(s)	84
BstX2I	RGATCY	1 cut(s)	447
BstYI	RGATCY	1 cut(s)	447
Bsu36I	CCTNAGG	1 cut(s)	120
BsuRI	GGCC	3 cut(s)	393, 833, 944
BtgI	CCRYGG	2 cut(s)	513, 709
BtrI	CACGTC	1 cut(s)	637
BtsCI	GGATG	1 cut(s)	306
BtsI	GCAGTG	2 cut(s)	54, 177
BtsIMutI	CAGTG	5 cut(s)	54, 112, 177, 574, 938
BveI	ACCTGC	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	792
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	2 cut(s)	392, 807
Csp6I	GTAC	6 cut(s)	316, 460, 590, 601, 694, 714
CviAII	CATG	7 cut(s)	114, 209, 228, 484, 514, 646, 721
CviQI	GTAC	6 cut(s)	316, 460, 590, 601, 694, 714
DdeI	CTNAG	6 cut(s)	43, 63, 120, 194, 273, 373
DpnI	GATC	5 cut(s)	329, 449, 725, 783, 923
DpnII	GATC	5 cut(s)	327, 447, 723, 781, 921
DraIII	CACNNNGTG	2 cut(s)	578, 580
DrdI	GACNNNNNNGTC	1 cut(s)	218
DseDI	GACNNNNNNGTC	1 cut(s)	218
EaeI	YGGCCR	2 cut(s)	831, 942
Eam1104I	CTCTTC	3 cut(s)	23, 318, 549
EarI	CTCTTC	3 cut(s)	23, 318, 549
Ecl136II	GAGCTC	2 cut(s)	14, 554
Eco130I	CCWWGG	2 cut(s)	513, 681
Eco24I	GRGCYC	2 cut(s)	16, 556
Eco32I	GATATC	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	807
Eco53kI	GAGCTC	2 cut(s)	14, 554
Eco57I	CTGAAG	1 cut(s)	147
Eco81I	CCTNAGG	1 cut(s)	120
EcoICRI	GAGCTC	2 cut(s)	14, 554
EcoRII	CCWGG	3 cut(s)	82, 355, 529
EcoRV	GATATC	1 cut(s)	133
EcoT14I	CCWWGG	2 cut(s)	513, 681
EcoT38I	GRGCYC	2 cut(s)	16, 556
ErhI	CCWWGG	2 cut(s)	513, 681
FaeI	CATG	7 cut(s)	117, 212, 231, 487, 517, 649, 724
FalI	AAGNNNNNCTT	2 cut(s)	250, 282
FaqI	GGGAC	1 cut(s)	623
FatI	CATG	7 cut(s)	113, 208, 227, 483, 513, 645, 720
FokI	GGATG	1 cut(s)	313
FriOI	GRGCYC	2 cut(s)	16, 556
FspBI	CTAG	3 cut(s)	386, 548, 958
GlaI	GCGC	1 cut(s)	167
GsaI	CCCAGC	1 cut(s)	620
GsuI	CTGGAG	2 cut(s)	378, 552
HaeII	RGCGCY	1 cut(s)	169
HaeIII	GGCC	3 cut(s)	393, 833, 944
HapII	CCGG	1 cut(s)	906
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	7 cut(s)	117, 212, 231, 487, 517, 649, 724
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HincII	GTYRAC	2 cut(s)	489, 613
HindII	GTYRAC	2 cut(s)	489, 613
HindIII	AAGCTT	1 cut(s)	292
HinfI	GANTC	2 cut(s)	110, 251
HpaII	CCGG	1 cut(s)	906
HphI	GGTGA	3 cut(s)	776, 868, 895
Hpy166II	GTNNAC	4 cut(s)	489, 592, 613, 864
Hpy188I	TCNGA	6 cut(s)	140, 197, 274, 376, 624, 889
Hpy188III	TCNNGA	5 cut(s)	9, 467, 497, 652, 823
Hpy8I	GTNNAC	4 cut(s)	489, 592, 613, 864
HpyAV	CCTTC	4 cut(s)	411, 426, 473, 883
HpyCH4III	ACNGT	7 cut(s)	107, 215, 493, 578, 596, 710, 933
HpyCH4IV	ACGT	2 cut(s)	636, 696
HpyCH4V	TGCA	1 cut(s)	936
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpyF3I	CTNAG	6 cut(s)	43, 63, 120, 194, 273, 373
HpySE526I	ACGT	2 cut(s)	636, 696
Hsp92II	CATG	7 cut(s)	117, 212, 231, 487, 517, 649, 724
HspAI	GCGC	1 cut(s)	166
KpnI	GGTACC	1 cut(s)	717
Kzo9I	GATC	5 cut(s)	327, 447, 723, 781, 921
LguI	GCTCTTC	1 cut(s)	549
LmnI	GCTCC	4 cut(s)	159, 435, 551, 957
LweI	GCATC	2 cut(s)	223, 655
MaeI	CTAG	3 cut(s)	386, 548, 958
MaeII	ACGT	2 cut(s)	636, 696
MaeIII	GTNAC	1 cut(s)	107
MalI	GATC	5 cut(s)	329, 449, 725, 783, 923
MboI	GATC	5 cut(s)	327, 447, 723, 781, 921
MflI	RGATCY	1 cut(s)	447
MhlI	GDGCHC	4 cut(s)	16, 356, 556, 662
MlsI	TGGCCA	2 cut(s)	833, 944
MluCI	AATT	1 cut(s)	307
MluNI	TGGCCA	2 cut(s)	833, 944
MlyI	GAGTC	2 cut(s)	104, 245
MmeI	TCCRAC	1 cut(s)	544
MnlI	CCTC	9 cut(s)	67, 129, 167, 255, 339, 383, 414, 448, 909
Mox20I	TGGCCA	2 cut(s)	833, 944
MscI	TGGCCA	2 cut(s)	833, 944
MseI	TTAA	1 cut(s)	408
MslI	CAYNNNNRTG	1 cut(s)	213
Msp20I	TGGCCA	2 cut(s)	833, 944
MspI	CCGG	1 cut(s)	906
MspR9I	CCNGG	3 cut(s)	84, 357, 531
MvaI	CCWGG	3 cut(s)	84, 357, 531
MwoI	GCNNNNNNNGC	1 cut(s)	151
NcoI	CCATGG	1 cut(s)	513
NdeII	GATC	5 cut(s)	327, 447, 723, 781, 921
NlaIII	CATG	7 cut(s)	117, 212, 231, 487, 517, 649, 724
NlaIV	GGNNCC	2 cut(s)	7, 715
NmuCI	GTSAC	1 cut(s)	107
NspI	RCATGY	2 cut(s)	487, 649
PciSI	GCTCTTC	1 cut(s)	549
PflFI	GACNNNGTC	1 cut(s)	635
PleI	GAGTC	2 cut(s)	104, 245
PpsI	GAGTC	2 cut(s)	104, 245
Ppu21I	YACGTR	1 cut(s)	697
PshAI	GACNNNNGTC	2 cut(s)	84, 114
Psp124BI	GAGCTC	2 cut(s)	16, 556
Psp6I	CCWGG	3 cut(s)	82, 355, 529
PspFI	CCCAGC	1 cut(s)	616
PspGI	CCWGG	3 cut(s)	82, 355, 529
PspN4I	GGNNCC	2 cut(s)	7, 715
PspPI	GGNCC	2 cut(s)	392, 807
PsuI	RGATCY	1 cut(s)	447
PsyI	GACNNNGTC	1 cut(s)	635
RsaI	GTAC	6 cut(s)	317, 461, 591, 602, 695, 715
RsaNI	GTAC	6 cut(s)	316, 460, 590, 601, 694, 714
RseI	CAYNNNNRTG	1 cut(s)	213
SacI	GAGCTC	2 cut(s)	16, 556
SapI	GCTCTTC	1 cut(s)	549
SaqAI	TTAA	1 cut(s)	408
Sau3AI	GATC	5 cut(s)	327, 447, 723, 781, 921
Sau96I	GGNCC	2 cut(s)	392, 807
SchI	GAGTC	2 cut(s)	104, 245
ScrFI	CCNGG	3 cut(s)	84, 357, 531
SduI	GDGCHC	4 cut(s)	16, 356, 556, 662
SfaNI	GCATC	2 cut(s)	223, 655
SfcI	CTRYAG	3 cut(s)	103, 742, 795
SinI	GGWCC	1 cut(s)	807
SmiMI	CAYNNNNRTG	1 cut(s)	213
SmlI	CTYRAG	3 cut(s)	452, 497, 650
SmoI	CTYRAG	3 cut(s)	452, 497, 650
Sse9I	AATT	1 cut(s)	307
SspMI	CTAG	3 cut(s)	386, 548, 958
SstI	GAGCTC	2 cut(s)	16, 556
StyD4I	CCNGG	3 cut(s)	82, 355, 529
StyI	CCWWGG	2 cut(s)	513, 681
TaaI	ACNGT	7 cut(s)	107, 215, 493, 578, 596, 710, 933
TaiI	ACGT	2 cut(s)	639, 699
TaqI	TCGA	1 cut(s)	729
TasI	AATT	1 cut(s)	307
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TscAI	CASTG	5 cut(s)	54, 112, 184, 581, 938
TseFI	GTSAC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	1 cut(s)	110
TspRI	CASTG	5 cut(s)	54, 112, 184, 581, 938
Tth111I	GACNNNGTC	1 cut(s)	635
VpaK11BI	GGWCC	1 cut(s)	807
XapI	RAATTY	1 cut(s)	307
XceI	RCATGY	2 cut(s)	487, 649
XspI	CTAG	3 cut(s)	386, 548, 958

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.