Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0015992

Physical Location & Seq

Genomic Coordinates Reverse (-)

40317552 .. 40320129

Gene Structure 2578 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1321200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGCTTCTTCTTCTTCTTCTTCCAGAGCTCTCTTGTTCTTCTTTGCTTTGCTTTCTCTCTCAGCAGTTTCTTGCTTTGCTACTGAGAGAAATGAGGAGGACCCAGGCCTTGTCATGGACTTCTATAGGGACACGTGTCCTCAGGCTGAAGAGGTCATCAGAGAACAAGTCAAGCTTCTCTACAAGCGCCACAAGAACACCGCCTTCTCTTGGCTCAGGAACATCTTTCATGACTGTGCTGTCCAGTCGTGTGATGCATCTCTGCTGCTGGACTCAACAAGGAGATCATTGTCTGAGAAGGAGATGGACAGAAGCTTTGGGATGAGAAACTTTAGGTACATTGAAGAGATTAAAGAAGCTTTGGAGAGGGAGTGCCCTGGTGTTGTTTCCTGCTCAGATATTCTTGTCTTGTCTGCCAGAGAGGGTGTTGTTAGGCTTGGAGGCCCATTCATTCCTCTTAAAACTGGAAGAAGAGATGGAAGGAGAAGCAGAGCTGATATCCTTGAGCAATACCTTCCTGACCACAATGAGAGCATGTCCGTTGTCCTTGAGAAGTTTGCTGACATGGGCATTGACACCCCCGGTTTGGTTGCCCTTCTAGGAGCTCACAGTGTTGGAAGAACACATTGTGTGAAGCTGGTGCACCGGTTGTACCCAGAAGTTGATCCTCAGCTCAACCCTGACCATGTCCCTCACATGCTCAAGAAGTGCCCTGATGCAATCCCCGACCCGAAAGCCGTTCAGTACGTGAGAAATGACCGCGGTACCCCCATGATCTTCGATAATAACTACTACAGAAACATCTTGGACAACAAGGGTTTGATGATGGTGGATCACCAGCTAGCCACAGACAAGAGGACAAAACCCTACGTCAAGAAAATGGCCAAGAGCCAAGACTACTTCTTCAAGGAGTTTTCGAGAGCCTTCACCATTCTCTCCGAGAACAACCCTCTCACCGGAAACAAGGGCGAGATCCGACAGCAGTGCAATGTTGCCAATAAGATCCGGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

338

Amino Acids

38.45

Weight (kDa)

8.3

Isoelectric Point (pI)

52.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	53 - 297	2.5e-71	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21960
fragaria_vesca	FvH4_3g02090
malus_domestica	MD05G1345800.v1.1 MD10G1321200.v1.1
prunus_persica	Prupe.4G021100_v2.0.a1
pyrus_communis	pycom10g27190
rosa_chinensis	RchiOBHm_Chr5g0003181
rosa_laevigata	RLG00000031083
rosa_multiflora	Rmu_sc0000146.1_g000034
rosa_roxburghii	Rroxscaffold_1G00072830
rosa_rugosa	Rorug04G0401100
rosa_samantha	Rh5AG026000 Rh5BG027200 Rh5CG028800
rosa_wichuraiana	Rw5G002410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	239
Acc65I	GGTACC	1 cut(s)	764
AccB1I	GGYRCC	1 cut(s)	764
AccII	CGCG	1 cut(s)	762
AciI	CCGC	3 cut(s)	201, 760, 762
AclWI	GGATC	4 cut(s)	659, 840, 967, 997
AcoI	YGGCCR	1 cut(s)	882
AcuI	CTGAAG	1 cut(s)	168
AcvI	CACGTG	1 cut(s)	135
AdeI	CACNNNGTG	1 cut(s)	629
AfaI	GTAC	4 cut(s)	338, 653, 746, 766
AfiI	CCNNNNNNNGG	4 cut(s)	115, 210, 586, 956
AflIII	ACRYGT	2 cut(s)	132, 134
AgeI	ACCGGT	1 cut(s)	645
AgsI	TTSAA	2 cut(s)	344, 907
AjnI	CCWGG	2 cut(s)	103, 376
AluBI	AGCT	9 cut(s)	29, 175, 315, 359, 494, 605, 637, 673, 841
AluI	AGCT	9 cut(s)	29, 175, 315, 359, 494, 605, 637, 673, 841
Alw21I	GWGCWC	3 cut(s)	31, 607, 645
Alw44I	GTGCAC	1 cut(s)	641
AlwI	GGATC	4 cut(s)	659, 840, 967, 997
AoxI	GGCC	3 cut(s)	106, 442, 882
ApaLI	GTGCAC	1 cut(s)	641
ApeKI	GCWGC	1 cut(s)	265
ArsI	GACNNNNNNTTYG	2 cut(s)	299, 331
AsiGI	ACCGGT	1 cut(s)	645
Asp718I	GGTACC	1 cut(s)	764
AspLEI	GCGC	1 cut(s)	189
AspS9I	GGNCC	2 cut(s)	100, 443
AsuC2I	CCSGG	2 cut(s)	582, 1007
AsuHPI	GGTGA	3 cut(s)	827, 919, 946
AsuNHI	GCTAGC	1 cut(s)	841
AvaII	GGWCC	1 cut(s)	100
AxyI	CCTNAGG	1 cut(s)	141
BaeGI	GKGCMC	3 cut(s)	377, 645, 713
BaeI	ACNNNNGTAYC	2 cut(s)	748, 781
BalI	TGGCCA	1 cut(s)	884
BanI	GGYRCC	1 cut(s)	764
BanII	GRGCYC	2 cut(s)	31, 607
BbrPI	CACGTG	1 cut(s)	135
Bbv12I	GWGCWC	3 cut(s)	31, 607, 645
BbvCI	CCTCAGC	1 cut(s)	669
BbvI	GCAGC	1 cut(s)	252
BccI	CCATC	3 cut(s)	298, 470, 820
BceAI	ACGGC	1 cut(s)	722
BcgI	CGANNNNNNTGC	2 cut(s)	966, 1000
BciT130I	CCWGG	2 cut(s)	105, 378
BcnI	CCSGG	2 cut(s)	582, 1007
BfaI	CTAG	3 cut(s)	599, 842, 1012
BfmI	CTRYAG	2 cut(s)	124, 793
BfoI	RGCGCY	1 cut(s)	190
BisI	GCNGC	1 cut(s)	266
BlsI	GCNGC	1 cut(s)	267
Bme1390I	CCNGG	4 cut(s)	105, 378, 582, 1007
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	2 cut(s)	100, 443
BmiI	GGNNCC	2 cut(s)	102, 766
BmrFI	CCNGG	4 cut(s)	105, 378, 582, 1007
BmsI	GCATC	3 cut(s)	244, 266, 706
BmtI	GCTAGC	1 cut(s)	845
BoxI	GACNNNNGTC	1 cut(s)	135
Bpu10I	CCTNAGC	2 cut(s)	215, 669
BpuEI	CTTGAG	3 cut(s)	524, 569, 686
BpuMI	CCSGG	2 cut(s)	582, 1007
BsaAI	YACGTR	2 cut(s)	135, 748
BsaJI	CCNNGG	4 cut(s)	103, 376, 580, 760
BsaWI	WCCGGW	2 cut(s)	645, 956
BsaXI	ACNNNNNCTCC	2 cut(s)	356, 386
Bsc4I	CCNNNNNNNGG	4 cut(s)	115, 210, 586, 956
Bse118I	RCCGGY	1 cut(s)	645
Bse1I	ACTGG	2 cut(s)	244, 469
Bse21I	CCTNAGG	1 cut(s)	141
Bse3DI	GCAATG	1 cut(s)	994
BseBI	CCWGG	2 cut(s)	105, 378
BseDI	CCNNGG	4 cut(s)	103, 376, 580, 760
BseGI	GGATG	1 cut(s)	327
BseLI	CCNNNNNNNGG	4 cut(s)	115, 210, 586, 956
BseMI	GCAATG	1 cut(s)	994
BseMII	CTCAG	7 cut(s)	75, 75, 155, 229, 285, 408, 683
BseNI	ACTGG	2 cut(s)	244, 469
BseRI	GAGGAG	1 cut(s)	110
BseSI	GKGCMC	3 cut(s)	377, 645, 713
BseXI	GCAGC	1 cut(s)	252
Bsh1236I	CGCG	1 cut(s)	762
BshFI	GGCC	3 cut(s)	108, 444, 884
BshNI	GGYRCC	1 cut(s)	764
BshTI	ACCGGT	1 cut(s)	645
BsiHKAI	GWGCWC	3 cut(s)	31, 607, 645
BsiSI	CCGG	4 cut(s)	582, 646, 957, 1006
BslFI	GGGAC	2 cut(s)	143, 674
BslI	CCNNNNNNNGG	4 cut(s)	115, 210, 586, 956
BsmFI	GGGAC	2 cut(s)	143, 674
BsnI	GGCC	3 cut(s)	108, 444, 884
Bsp1286I	GDGCHC	5 cut(s)	31, 377, 607, 645, 713
Bsp143I	GATC	6 cut(s)	284, 664, 774, 832, 972, 1002
BspACI	CCGC	3 cut(s)	201, 760, 762
BspANI	GGCC	3 cut(s)	108, 444, 884
BspCNI	CTCAG	7 cut(s)	74, 76, 154, 228, 286, 407, 682
BspFNI	CGCG	1 cut(s)	762
BspHI	TCATGA	1 cut(s)	229
BspLI	GGNNCC	2 cut(s)	102, 766
BspOI	GCTAGC	1 cut(s)	845
BspPI	GGATC	4 cut(s)	659, 840, 967, 997
BspT107I	GGYRCC	1 cut(s)	764
BsrDI	GCAATG	1 cut(s)	994
BsrFI	RCCGGY	1 cut(s)	645
BsrI	ACTGG	2 cut(s)	244, 469
BssAI	RCCGGY	1 cut(s)	645
BssECI	CCNNGG	4 cut(s)	103, 376, 580, 760
BssMI	GATC	6 cut(s)	284, 664, 774, 832, 972, 1002
Bst2UI	CCWGG	2 cut(s)	105, 378
Bst4CI	ACNGT	2 cut(s)	236, 611
Bst6I	CTCTTC	3 cut(s)	144, 339, 466
BstBAI	YACGTR	2 cut(s)	135, 748
BstC8I	GCNNGC	1 cut(s)	843
BstDEI	CTNAG	7 cut(s)	61, 84, 141, 215, 294, 394, 669
BstDSI	CCRYGG	1 cut(s)	760
BstF5I	GGATG	1 cut(s)	327
BstFNI	CGCG	1 cut(s)	762
BstH2I	RGCGCY	1 cut(s)	190
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	6 cut(s)	287, 667, 777, 835, 975, 1005
BstMBI	GATC	6 cut(s)	284, 664, 774, 832, 972, 1002
BstNI	CCWGG	2 cut(s)	105, 378
BstNSI	RCATGY	2 cut(s)	538, 700
BstPAI	GACNNNNGTC	1 cut(s)	135
BstSCI	CCNGG	4 cut(s)	103, 376, 580, 1005
BstSFI	CTRYAG	2 cut(s)	124, 793
BstSLI	GKGCMC	3 cut(s)	377, 645, 713
BstUI	CGCG	1 cut(s)	762
BstV1I	GCAGC	1 cut(s)	252
BstX2I	RGATCY	2 cut(s)	972, 1002
BstYI	RGATCY	2 cut(s)	972, 1002
Bsu36I	CCTNAGG	1 cut(s)	141
BsuRI	GGCC	3 cut(s)	108, 444, 884
BtgI	CCRYGG	1 cut(s)	760
BtsCI	GGATG	1 cut(s)	327
BtsI	GCAGTG	1 cut(s)	989
BtsIMutI	CAGTG	2 cut(s)	616, 989
Cac8I	GCNNGC	1 cut(s)	843
CciI	TCATGA	1 cut(s)	229
CfoI	GCGC	1 cut(s)	189
Cfr10I	RCCGGY	1 cut(s)	645
Cfr13I	GGNCC	2 cut(s)	100, 443
Cfr42I	CCGCGG	1 cut(s)	763
Csp6I	GTAC	4 cut(s)	337, 652, 745, 765
CspAI	ACCGGT	1 cut(s)	645
CviAII	CATG	7 cut(s)	115, 230, 535, 565, 686, 697, 772
CviQI	GTAC	4 cut(s)	337, 652, 745, 765
DdeI	CTNAG	7 cut(s)	61, 84, 141, 215, 294, 394, 669
DpnI	GATC	6 cut(s)	286, 666, 776, 834, 974, 1004
DpnII	GATC	6 cut(s)	284, 664, 774, 832, 972, 1002
DraIII	CACNNNGTG	1 cut(s)	629
DrdI	GACNNNNNNGTC	1 cut(s)	239
DseDI	GACNNNNNNGTC	1 cut(s)	239
EaeI	YGGCCR	1 cut(s)	882
Eam1104I	CTCTTC	3 cut(s)	144, 339, 466
EarI	CTCTTC	3 cut(s)	144, 339, 466
Ecl136II	GAGCTC	2 cut(s)	29, 605
Eco147I	AGGCCT	1 cut(s)	108
Eco24I	GRGCYC	2 cut(s)	31, 607
Eco32I	GATATC	1 cut(s)	499
Eco47I	GGWCC	1 cut(s)	100
Eco53kI	GAGCTC	2 cut(s)	29, 605
Eco57I	CTGAAG	1 cut(s)	168
Eco72I	CACGTG	1 cut(s)	135
Eco81I	CCTNAGG	1 cut(s)	141
EcoICRI	GAGCTC	2 cut(s)	29, 605
EcoO109I	RGGNCCY	1 cut(s)	100
EcoRII	CCWGG	2 cut(s)	103, 376
EcoRV	GATATC	1 cut(s)	499
EcoT22I	ATGCAT	1 cut(s)	259
EcoT38I	GRGCYC	2 cut(s)	31, 607
FaeI	CATG	7 cut(s)	118, 233, 538, 568, 689, 700, 775
FaiI	YATR	8 cut(s)	116, 126, 231, 536, 566, 687, 698, 773
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
FaqI	GGGAC	2 cut(s)	143, 674
FatI	CATG	7 cut(s)	114, 229, 534, 564, 685, 696, 771
Fnu4HI	GCNGC	1 cut(s)	266
FokI	GGATG	1 cut(s)	334
FriOI	GRGCYC	2 cut(s)	31, 607
Fsp4HI	GCNGC	1 cut(s)	266
FspBI	CTAG	3 cut(s)	599, 842, 1012
GlaI	GCGC	1 cut(s)	188
GluI	GCNGC	1 cut(s)	266
HaeII	RGCGCY	1 cut(s)	190
HaeIII	GGCC	3 cut(s)	108, 444, 884
HapII	CCGG	4 cut(s)	582, 646, 957, 1006
HhaI	GCGC	1 cut(s)	189
Hin1II	CATG	7 cut(s)	118, 233, 538, 568, 689, 700, 775
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HindIII	AAGCTT	3 cut(s)	173, 313, 357
HinfI	GANTC	1 cut(s)	272
HpaII	CCGG	4 cut(s)	582, 646, 957, 1006
HphI	GGTGA	3 cut(s)	827, 919, 946
Hpy166II	GTNNAC	1 cut(s)	643
Hpy188I	TCNGA	5 cut(s)	161, 295, 397, 940, 977
Hpy188III	TCNNGA	7 cut(s)	24, 217, 230, 518, 703, 874, 918
Hpy8I	GTNNAC	1 cut(s)	643
HpyAV	CCTTC	6 cut(s)	214, 292, 474, 524, 605, 934
HpyCH4III	ACNGT	2 cut(s)	236, 611
HpyCH4IV	ACGT	3 cut(s)	134, 747, 870
HpyCH4V	TGCA	4 cut(s)	257, 643, 719, 987
HpyF3I	CTNAG	7 cut(s)	61, 84, 141, 215, 294, 394, 669
HpySE526I	ACGT	3 cut(s)	134, 747, 870
Hsp92II	CATG	7 cut(s)	118, 233, 538, 568, 689, 700, 775
HspAI	GCGC	1 cut(s)	187
KpnI	GGTACC	1 cut(s)	768
KspI	CCGCGG	1 cut(s)	763
Kzo9I	GATC	6 cut(s)	284, 664, 774, 832, 972, 1002
LmnI	GCTCC	1 cut(s)	602
Lsp1109I	GCAGC	1 cut(s)	252
LweI	GCATC	3 cut(s)	244, 266, 706
MaeI	CTAG	3 cut(s)	599, 842, 1012
MaeII	ACGT	3 cut(s)	134, 747, 870
MalI	GATC	6 cut(s)	286, 666, 776, 834, 974, 1004
MboI	GATC	6 cut(s)	284, 664, 774, 832, 972, 1002
MflI	RGATCY	2 cut(s)	972, 1002
MhlI	GDGCHC	5 cut(s)	31, 377, 607, 645, 713
MlsI	TGGCCA	1 cut(s)	884
MluNI	TGGCCA	1 cut(s)	884
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	2 cut(s)	595, 1000
Mox20I	TGGCCA	1 cut(s)	884
Mph1103I	ATGCAT	1 cut(s)	259
MscI	TGGCCA	1 cut(s)	884
MseI	TTAA	2 cut(s)	351, 459
MslI	CAYNNNNRTG	1 cut(s)	234
Msp20I	TGGCCA	1 cut(s)	884
MspA1I	CMGCKG	1 cut(s)	762
MspI	CCGG	4 cut(s)	582, 646, 957, 1006
MspR9I	CCNGG	4 cut(s)	105, 378, 582, 1007
MvaI	CCWGG	2 cut(s)	105, 378
MvnI	CGCG	1 cut(s)	762
NciI	CCSGG	2 cut(s)	582, 1007
NdeII	GATC	6 cut(s)	284, 664, 774, 832, 972, 1002
NheI	GCTAGC	1 cut(s)	841
NlaIII	CATG	7 cut(s)	118, 233, 538, 568, 689, 700, 775
NlaIV	GGNNCC	2 cut(s)	102, 766
NsiI	ATGCAT	1 cut(s)	259
NspI	RCATGY	2 cut(s)	538, 700
PagI	TCATGA	1 cut(s)	229
PceI	AGGCCT	1 cut(s)	108
PflFI	GACNNNGTC	1 cut(s)	686
PfoI	TCCNGGA	1 cut(s)	1005
PinAI	ACCGGT	1 cut(s)	645
PkrI	GCNGC	1 cut(s)	267
PleI	GAGTC	1 cut(s)	266
PmaCI	CACGTG	1 cut(s)	135
PmlI	CACGTG	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	266
Ppu21I	YACGTR	2 cut(s)	135, 748
PpuMI	RGGWCCY	1 cut(s)	100
PshAI	GACNNNNGTC	1 cut(s)	135
Psp124BI	GAGCTC	2 cut(s)	31, 607
Psp5II	RGGWCCY	1 cut(s)	100
Psp6I	CCWGG	2 cut(s)	103, 376
PspCI	CACGTG	1 cut(s)	135
PspGI	CCWGG	2 cut(s)	103, 376
PspN4I	GGNNCC	2 cut(s)	102, 766
PspPI	GGNCC	2 cut(s)	100, 443
PspPPI	RGGWCCY	1 cut(s)	100
PsuI	RGATCY	2 cut(s)	972, 1002
PsyI	GACNNNGTC	1 cut(s)	686
RsaI	GTAC	4 cut(s)	338, 653, 746, 766
RsaNI	GTAC	4 cut(s)	337, 652, 745, 765
RseI	CAYNNNNRTG	1 cut(s)	234
SacI	GAGCTC	2 cut(s)	31, 607
SacII	CCGCGG	1 cut(s)	763
SaqAI	TTAA	2 cut(s)	351, 459
SatI	GCNGC	1 cut(s)	266
Sau3AI	GATC	6 cut(s)	284, 664, 774, 832, 972, 1002
Sau96I	GGNCC	2 cut(s)	100, 443
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	4 cut(s)	105, 378, 582, 1007
SduI	GDGCHC	5 cut(s)	31, 377, 607, 645, 713
SfaNI	GCATC	3 cut(s)	244, 266, 706
SfcI	CTRYAG	2 cut(s)	124, 793
Sfr303I	CCGCGG	1 cut(s)	763
SgrBI	CCGCGG	1 cut(s)	763
SinI	GGWCC	1 cut(s)	100
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	3 cut(s)	503, 548, 701
SmoI	CTYRAG	3 cut(s)	503, 548, 701
SseBI	AGGCCT	1 cut(s)	108
SsiI	CCGC	3 cut(s)	201, 760, 762
SspMI	CTAG	3 cut(s)	599, 842, 1012
SstI	GAGCTC	2 cut(s)	31, 607
StuI	AGGCCT	1 cut(s)	108
StyD4I	CCNGG	4 cut(s)	103, 376, 580, 1005
TaaI	ACNGT	2 cut(s)	236, 611
TaiI	ACGT	3 cut(s)	137, 750, 873
TaqI	TCGA	2 cut(s)	780, 917
Tru1I	TTAA	2 cut(s)	351, 459
Tru9I	TTAA	2 cut(s)	351, 459
TscAI	CASTG	2 cut(s)	616, 989
TseI	GCWGC	1 cut(s)	265
TspDTI	ATGAA	2 cut(s)	218, 439
TspGWI	ACGGA	1 cut(s)	529
TspRI	CASTG	2 cut(s)	616, 989
Tth111I	GACNNNGTC	1 cut(s)	686
VneI	GTGCAC	1 cut(s)	641
VpaK11BI	GGWCC	1 cut(s)	100
XceI	RCATGY	2 cut(s)	538, 700
XspI	CTAG	3 cut(s)	599, 842, 1012
Zsp2I	ATGCAT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.