Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0015992

Physical Location & Seq

Genomic Coordinates Forward (+)

1810461 .. 1811821

Gene Structure 1361 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG026000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCTTCCAGAGCTCTCTTCTTCTTTGCTTTGCTATCTCTCTCAGCAGTGCTTTGCTTTGCTGAGAGCAATGAGGAAGACCCAGGTCTTGTTATGAACTTCTACAGTGACTCATGTCCTCAGGCTGAAGATATCGTCAGAGAGCAGGTCAAGCTCCTCTACAAGCGCCACAAGAACACTGCTTTCTCTTGGCTCAGAAACATCTTCCATGACTGTGCTGTCCAGTCATGTGATGCTTCACTACTTTTGGACTCAACAAGGAGGTCTTTGTCTGAGAAAGAAATGGACAGAAGCTTTGGGATGAGAAATTTTAGGTACATTGAAGAGATCAAAGAAGCAATAGAGAGGGAGTGCCCTGGAGTTGTTTCTTGCTCAGATATTCTTGTTTTGTCAGCCAGAGAAGGAGTTGTTAGGCTAGGAGGCCCATTTATTCCTCTTAAAACTGGAAGGAGAGATGGTAGAAGGAGCAGAGCAGAGATCCTTGAGGAGTACCTTCCTGACCACAATGAGAGCATGTCAACTGTTCTTGAGAAGTTCTCTGCCATGGGCATTGACACCCCTGGAGTTGTTGCCCTTCTAGGAGCTCACAGTGTTGGAAGAACACACTGTGTGAAGTTGGTGCACCGTTTGTACCCAGAAGTTGACCCAGCTCTGAACCCAGACCACGTCCCCCACATGCTCAAGAAGTGCCCTGATGCTATCCCTGACCCCAAGGCAGTCCAGTACGTGAGAAATGACCGTGGTACCCCCATGATCTTCGACAACAACTACTACAGGAACATCTTGGACAACAAGGGTTTGATGATGGTGGATCACCAGCTTGCCACAGACAAAAGGACCAAGCCCTATGTCAAGAAAATGGCCAAAAGCCAAGACTACTTTTTCAAGGAGTTCACAAGAGCCTTCACCATTCTCTCCGAGAACAACCCTCTCACCGGAGACAAGGGCGAGATCAGGCAACAGTGCAATGTGGCCAACAAGCTCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

329

Amino Acids

37.45

Weight (kDa)

7.6

Isoelectric Point (pI)

52.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	46 - 290	3.6e-71	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21960
fragaria_vesca	FvH4_3g02090
malus_domestica	MD05G1345800.v1.1 MD10G1321200.v1.1
prunus_persica	Prupe.4G021100_v2.0.a1
pyrus_communis	pycom10g27190
rosa_chinensis	RchiOBHm_Chr5g0003181
rosa_laevigata	RLG00000031083
rosa_multiflora	Rmu_sc0000146.1_g000034
rosa_roxburghii	Rroxscaffold_1G00072830
rosa_rugosa	Rorug04G0401100
rosa_samantha	Rh5AG026000 Rh5BG027200 Rh5CG028800
rosa_wichuraiana	Rw5G002410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	218
Acc36I	ACCTGC	1 cut(s)	136
Acc65I	GGTACC	1 cut(s)	743
AccB1I	GGYRCC	1 cut(s)	743
AclWI	GGATC	2 cut(s)	472, 819
AcoI	YGGCCR	2 cut(s)	861, 972
AcsI	RAATTY	1 cut(s)	307
AcuI	CTGAAG	1 cut(s)	147
AdeI	CACNNNGTG	2 cut(s)	608, 610
AfaI	GTAC	5 cut(s)	317, 491, 632, 725, 745
AfiI	CCNNNNNNNGG	1 cut(s)	935
AgsI	TTSAA	2 cut(s)	323, 886
AjiI	CACGTC	1 cut(s)	667
AjnI	CCWGG	3 cut(s)	82, 355, 559
AluBI	AGCT	7 cut(s)	14, 154, 294, 584, 650, 820, 982
AluI	AGCT	7 cut(s)	14, 154, 294, 584, 650, 820, 982
Alw21I	GWGCWC	3 cut(s)	16, 586, 624
Alw26I	GTCTC	1 cut(s)	933
Alw44I	GTGCAC	1 cut(s)	620
AlwI	GGATC	2 cut(s)	472, 819
AoxI	GGCC	3 cut(s)	421, 861, 972
ApaLI	GTGCAC	1 cut(s)	620
ApoI	RAATTY	1 cut(s)	307
ArsI	GACNNNNNNTTYG	2 cut(s)	278, 310
Asp718I	GGTACC	1 cut(s)	743
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	2 cut(s)	422, 837
AsuHPI	GGTGA	3 cut(s)	806, 898, 925
AvaII	GGWCC	1 cut(s)	837
AxyI	CCTNAGG	1 cut(s)	120
BaeGI	GKGCMC	3 cut(s)	356, 624, 692
BaeI	ACNNNNGTAYC	2 cut(s)	727, 760
BalI	TGGCCA	2 cut(s)	863, 974
BanI	GGYRCC	1 cut(s)	743
BanII	GRGCYC	2 cut(s)	16, 586
BbsI	GAAGAC	1 cut(s)	84
Bbv12I	GWGCWC	3 cut(s)	16, 586, 624
BccI	CCATC	2 cut(s)	449, 799
BciT130I	CCWGG	3 cut(s)	84, 357, 561
BcoDI	GTCTC	1 cut(s)	933
BfaI	CTAG	3 cut(s)	416, 578, 988
BfmI	CTRYAG	2 cut(s)	103, 772
BfoI	RGCGCY	1 cut(s)	169
BfuAI	ACCTGC	1 cut(s)	136
Bme1390I	CCNGG	3 cut(s)	84, 357, 561
Bme18I	GGWCC	1 cut(s)	837
BmgBI	CACGTC	1 cut(s)	667
BmgT120I	GGNCC	2 cut(s)	422, 837
BmiI	GGNNCC	1 cut(s)	745
BmrFI	CCNGG	3 cut(s)	84, 357, 561
BmsI	GCATC	2 cut(s)	223, 685
BoxI	GACNNNNGTC	2 cut(s)	84, 114
BpiI	GAAGAC	1 cut(s)	84
BplI	GAGNNNNNCTC	2 cut(s)	521, 553
BpmI	CTGGAG	2 cut(s)	378, 582
BpuEI	CTTGAG	3 cut(s)	503, 548, 665
BsaAI	YACGTR	1 cut(s)	727
BsaJI	CCNNGG	6 cut(s)	82, 355, 543, 559, 711, 739
BsaWI	WCCGGW	1 cut(s)	935
BsaXI	ACNNNNNCTCC	2 cut(s)	442, 472
Bsc4I	CCNNNNNNNGG	1 cut(s)	935
Bse1I	ACTGG	3 cut(s)	223, 448, 721
Bse21I	CCTNAGG	1 cut(s)	120
Bse3DI	GCAATG	2 cut(s)	76, 973
BseBI	CCWGG	3 cut(s)	84, 357, 561
BseDI	CCNNGG	6 cut(s)	82, 355, 543, 559, 711, 739
BseGI	GGATG	1 cut(s)	306
BseLI	CCNNNNNNNGG	1 cut(s)	935
BseMI	GCAATG	2 cut(s)	76, 973
BseMII	CTCAG	6 cut(s)	54, 57, 134, 208, 264, 387
BseNI	ACTGG	3 cut(s)	223, 448, 721
BseRI	GAGGAG	2 cut(s)	146, 500
BseSI	GKGCMC	3 cut(s)	356, 624, 692
BseYI	CCCAGC	1 cut(s)	646
BshFI	GGCC	3 cut(s)	423, 863, 974
BshNI	GGYRCC	1 cut(s)	743
BsiHKAI	GWGCWC	3 cut(s)	16, 586, 624
BsiSI	CCGG	1 cut(s)	936
BslFI	GGGAC	1 cut(s)	653
BslI	CCNNNNNNNGG	1 cut(s)	935
BsmAI	GTCTC	1 cut(s)	933
BsmFI	GGGAC	1 cut(s)	653
BsnI	GGCC	3 cut(s)	423, 863, 974
Bsp1286I	GDGCHC	5 cut(s)	16, 356, 586, 624, 692
Bsp143I	GATC	5 cut(s)	327, 477, 753, 811, 951
Bsp19I	CCATGG	1 cut(s)	543
BspANI	GGCC	3 cut(s)	423, 863, 974
BspCNI	CTCAG	6 cut(s)	55, 56, 133, 207, 265, 386
BspLI	GGNNCC	1 cut(s)	745
BspMI	ACCTGC	1 cut(s)	136
BspPI	GGATC	2 cut(s)	472, 819
BspT107I	GGYRCC	1 cut(s)	743
BsrDI	GCAATG	2 cut(s)	76, 973
BsrI	ACTGG	3 cut(s)	223, 448, 721
BssECI	CCNNGG	6 cut(s)	82, 355, 543, 559, 711, 739
BssMI	GATC	5 cut(s)	327, 477, 753, 811, 951
BssT1I	CCWWGG	2 cut(s)	543, 711
Bst2UI	CCWGG	3 cut(s)	84, 357, 561
Bst4CI	ACNGT	8 cut(s)	107, 215, 523, 590, 608, 626, 740, 963
Bst6I	CTCTTC	2 cut(s)	23, 318
BstBAI	YACGTR	1 cut(s)	727
BstC8I	GCNNGC	1 cut(s)	822
BstDEI	CTNAG	6 cut(s)	43, 63, 120, 194, 273, 373
BstDSI	CCRYGG	2 cut(s)	543, 739
BstF5I	GGATG	1 cut(s)	306
BstH2I	RGCGCY	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	5 cut(s)	330, 480, 756, 814, 954
BstMAI	GTCTC	1 cut(s)	933
BstMBI	GATC	5 cut(s)	327, 477, 753, 811, 951
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 151
BstNI	CCWGG	3 cut(s)	84, 357, 561
BstNSI	RCATGY	2 cut(s)	517, 679
BstPAI	GACNNNNGTC	2 cut(s)	84, 114
BstSCI	CCNGG	3 cut(s)	82, 355, 559
BstSFI	CTRYAG	2 cut(s)	103, 772
BstSLI	GKGCMC	3 cut(s)	356, 624, 692
BstV2I	GAAGAC	1 cut(s)	84
BstX2I	RGATCY	1 cut(s)	477
BstYI	RGATCY	1 cut(s)	477
Bsu36I	CCTNAGG	1 cut(s)	120
BsuRI	GGCC	3 cut(s)	423, 863, 974
BtgI	CCRYGG	2 cut(s)	543, 739
BtrI	CACGTC	1 cut(s)	667
BtsCI	GGATG	1 cut(s)	306
BtsI	GCAGTG	2 cut(s)	54, 177
BtsIMutI	CAGTG	6 cut(s)	54, 112, 177, 595, 604, 968
BveI	ACCTGC	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	822
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	2 cut(s)	422, 837
Csp6I	GTAC	5 cut(s)	316, 490, 631, 724, 744
CviAII	CATG	7 cut(s)	114, 209, 228, 514, 544, 676, 751
CviQI	GTAC	5 cut(s)	316, 490, 631, 724, 744
DdeI	CTNAG	6 cut(s)	43, 63, 120, 194, 273, 373
DpnI	GATC	5 cut(s)	329, 479, 755, 813, 953
DpnII	GATC	5 cut(s)	327, 477, 753, 811, 951
DraIII	CACNNNGTG	2 cut(s)	608, 610
DrdI	GACNNNNNNGTC	1 cut(s)	218
DseDI	GACNNNNNNGTC	1 cut(s)	218
EaeI	YGGCCR	2 cut(s)	861, 972
Eam1104I	CTCTTC	2 cut(s)	23, 318
EarI	CTCTTC	2 cut(s)	23, 318
Ecl136II	GAGCTC	2 cut(s)	14, 584
Eco130I	CCWWGG	2 cut(s)	543, 711
Eco24I	GRGCYC	2 cut(s)	16, 586
Eco32I	GATATC	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	837
Eco53kI	GAGCTC	2 cut(s)	14, 584
Eco57I	CTGAAG	1 cut(s)	147
Eco81I	CCTNAGG	1 cut(s)	120
EcoICRI	GAGCTC	2 cut(s)	14, 584
EcoRII	CCWGG	3 cut(s)	82, 355, 559
EcoRV	GATATC	1 cut(s)	133
EcoT14I	CCWWGG	2 cut(s)	543, 711
EcoT38I	GRGCYC	2 cut(s)	16, 586
ErhI	CCWWGG	2 cut(s)	543, 711
FaeI	CATG	7 cut(s)	117, 212, 231, 517, 547, 679, 754
FaiI	YATR	9 cut(s)	95, 115, 210, 229, 515, 545, 677, 752, 849
FalI	AAGNNNNNCTT	2 cut(s)	250, 282
FaqI	GGGAC	1 cut(s)	653
FatI	CATG	7 cut(s)	113, 208, 227, 513, 543, 675, 750
FokI	GGATG	1 cut(s)	313
FriOI	GRGCYC	2 cut(s)	16, 586
FspBI	CTAG	3 cut(s)	416, 578, 988
GlaI	GCGC	1 cut(s)	167
GsaI	CCCAGC	1 cut(s)	650
GsuI	CTGGAG	2 cut(s)	378, 582
HaeII	RGCGCY	1 cut(s)	169
HaeIII	GGCC	3 cut(s)	423, 863, 974
HapII	CCGG	1 cut(s)	936
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	7 cut(s)	117, 212, 231, 517, 547, 679, 754
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HincII	GTYRAC	2 cut(s)	519, 643
HindII	GTYRAC	2 cut(s)	519, 643
HindIII	AAGCTT	1 cut(s)	292
HinfI	GANTC	2 cut(s)	110, 251
HpaII	CCGG	1 cut(s)	936
HphI	GGTGA	3 cut(s)	806, 898, 925
Hpy166II	GTNNAC	4 cut(s)	519, 622, 643, 894
Hpy188I	TCNGA	6 cut(s)	140, 197, 274, 376, 654, 919
Hpy188III	TCNNGA	5 cut(s)	9, 497, 527, 682, 853
Hpy8I	GTNNAC	4 cut(s)	519, 622, 643, 894
HpyAV	CCTTC	6 cut(s)	395, 441, 456, 503, 584, 913
HpyCH4III	ACNGT	8 cut(s)	107, 215, 523, 590, 608, 626, 740, 963
HpyCH4IV	ACGT	2 cut(s)	666, 726
HpyCH4V	TGCA	2 cut(s)	622, 966
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 151
HpyF3I	CTNAG	6 cut(s)	43, 63, 120, 194, 273, 373
HpySE526I	ACGT	2 cut(s)	666, 726
Hsp92II	CATG	7 cut(s)	117, 212, 231, 517, 547, 679, 754
HspAI	GCGC	1 cut(s)	166
KpnI	GGTACC	1 cut(s)	747
Kzo9I	GATC	5 cut(s)	327, 477, 753, 811, 951
LmnI	GCTCC	4 cut(s)	159, 465, 581, 987
LweI	GCATC	2 cut(s)	223, 685
MaeI	CTAG	3 cut(s)	416, 578, 988
MaeII	ACGT	2 cut(s)	666, 726
MaeIII	GTNAC	1 cut(s)	107
MalI	GATC	5 cut(s)	329, 479, 755, 813, 953
MboI	GATC	5 cut(s)	327, 477, 753, 811, 951
MboII	GAAGA	8 cut(s)	10, 13, 89, 140, 196, 335, 609, 748
MflI	RGATCY	1 cut(s)	477
MhlI	GDGCHC	5 cut(s)	16, 356, 586, 624, 692
MlsI	TGGCCA	2 cut(s)	863, 974
MluCI	AATT	1 cut(s)	307
MluNI	TGGCCA	2 cut(s)	863, 974
MlyI	GAGTC	2 cut(s)	104, 245
MmeI	TCCRAC	1 cut(s)	574
MnlI	CCTC	9 cut(s)	67, 129, 167, 255, 339, 413, 444, 478, 939
Mox20I	TGGCCA	2 cut(s)	863, 974
MscI	TGGCCA	2 cut(s)	863, 974
MseI	TTAA	1 cut(s)	438
MslI	CAYNNNNRTG	1 cut(s)	213
Msp20I	TGGCCA	2 cut(s)	863, 974
MspI	CCGG	1 cut(s)	936
MspR9I	CCNGG	3 cut(s)	84, 357, 561
MvaI	CCWGG	3 cut(s)	84, 357, 561
MwoI	GCNNNNNNNGC	2 cut(s)	11, 151
NcoI	CCATGG	1 cut(s)	543
NdeII	GATC	5 cut(s)	327, 477, 753, 811, 951
NlaIII	CATG	7 cut(s)	117, 212, 231, 517, 547, 679, 754
NlaIV	GGNNCC	1 cut(s)	745
NmuCI	GTSAC	1 cut(s)	107
NspI	RCATGY	2 cut(s)	517, 679
PflFI	GACNNNGTC	1 cut(s)	665
PleI	GAGTC	2 cut(s)	104, 245
PpsI	GAGTC	2 cut(s)	104, 245
Ppu21I	YACGTR	1 cut(s)	727
PshAI	GACNNNNGTC	2 cut(s)	84, 114
Psp124BI	GAGCTC	2 cut(s)	16, 586
Psp6I	CCWGG	3 cut(s)	82, 355, 559
PspFI	CCCAGC	1 cut(s)	646
PspGI	CCWGG	3 cut(s)	82, 355, 559
PspN4I	GGNNCC	1 cut(s)	745
PspPI	GGNCC	2 cut(s)	422, 837
PsuI	RGATCY	1 cut(s)	477
PsyI	GACNNNGTC	1 cut(s)	665
RsaI	GTAC	5 cut(s)	317, 491, 632, 725, 745
RsaNI	GTAC	5 cut(s)	316, 490, 631, 724, 744
RseI	CAYNNNNRTG	1 cut(s)	213
SacI	GAGCTC	2 cut(s)	16, 586
SaqAI	TTAA	1 cut(s)	438
Sau3AI	GATC	5 cut(s)	327, 477, 753, 811, 951
Sau96I	GGNCC	2 cut(s)	422, 837
SchI	GAGTC	2 cut(s)	104, 245
ScrFI	CCNGG	3 cut(s)	84, 357, 561
SduI	GDGCHC	5 cut(s)	16, 356, 586, 624, 692
SfaNI	GCATC	2 cut(s)	223, 685
SfcI	CTRYAG	2 cut(s)	103, 772
SinI	GGWCC	1 cut(s)	837
SmiMI	CAYNNNNRTG	1 cut(s)	213
SmlI	CTYRAG	3 cut(s)	482, 527, 680
SmoI	CTYRAG	3 cut(s)	482, 527, 680
Sse9I	AATT	1 cut(s)	307
SspMI	CTAG	3 cut(s)	416, 578, 988
SstI	GAGCTC	2 cut(s)	16, 586
StyD4I	CCNGG	3 cut(s)	82, 355, 559
StyI	CCWWGG	2 cut(s)	543, 711
TaaI	ACNGT	8 cut(s)	107, 215, 523, 590, 608, 626, 740, 963
TaiI	ACGT	2 cut(s)	669, 729
TaqI	TCGA	1 cut(s)	759
TasI	AATT	1 cut(s)	307
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	6 cut(s)	54, 112, 184, 595, 611, 968
TseFI	GTSAC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	1 cut(s)	110
TspRI	CASTG	6 cut(s)	54, 112, 184, 595, 611, 968
Tth111I	GACNNNGTC	1 cut(s)	665
VneI	GTGCAC	1 cut(s)	620
VpaK11BI	GGWCC	1 cut(s)	837
XapI	RAATTY	1 cut(s)	307
XceI	RCATGY	2 cut(s)	517, 679
XspI	CTAG	3 cut(s)	416, 578, 988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.