Prupe.4G021100_v2.0.a1

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0015992
Physical Location & Seq
Forward (+)
992689 .. 994792
2104 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G021100.1

Sequence Viewer

Length: 990 bp
ATGAGTTCCAGAGCTCTCTTCTTCTTTGCTTTGCTAGCTTTCTCAGCAGTGTCTTGTTTTGCTGAGAATGAAGAGGACCCAGGTCTTGTTATGGACTTTTACAAGGACAGCTGTCCTCAGGCTGAAGATGTTATCAGAGAACAAGTCAAGCTTCTCTACAAGCGCCACAAGAACACTGCATTCTCTTGGCTCAGAAACATCTTCCATGACTGTGCTGTCCAGTCATGTGATGCTTCCCTGCTGCTGGACTCAACCAGGAGGTCCTTGTCTGAGAAGGAGATGGACAGGAGCTTTGGGATGAGAAACTTTAGGTACATTGAAGAAATTAAAGAAGCACTGGAGAGGGAGTGCCCTGGAGTTGTTTCTTGTTCAGATATTCTTGTTTTGTCTGCTAGGGAGGGTGTTGTTCGGCTAGGAGGCCCATTCATCCCTCTCAAAACTGGAAGAAGAGATGGAAGGAGGAGCAGAGCAGAGATCCTTGAGCAATACCTTCCTGACCACAATGAGAGCATGTCCACTGTCCTTGAGAAGTTTGCTGACATGGGCATTGACACCCCTGGTCTGGTTGCCCTGCTAGGAGCTCACAGTGTTGGTAGAACACACTGTGTGAAGCTGGTGCACCGTTTATACCCAGAAGTTGACCCTCAGCTCAACCCTGACCATGTTGGTCACATGCTCAAGAAGTGCCCTGATGCAATCCCTGACCCCAAAGCGGTTCAATATGTGAGAAATGACCGCGGTACCCCCATGATATTTGACAACAACTACTACAGGAACATTTTGGACAACAAGGGTTTGATGATGGTGGATCACCAACTAGCCACAGACAAGAGGACAAAACCCTATGTCAAGAAAATGGCCAAGAGCCAAGACTACTTCTTTAAGGAGTTTTCAAAAGCTTTCACCATTCTCTCTGAGAACAACCCTCTTACAGGAACAAAGGGAGAGATCAGGCAGCAGTGCAATGTTGCCAACAAGATCCACGACTAG

Protein Analysis

330

Amino Acids

37.53

Weight (kDa)

7.59

Isoelectric Point (pI)

52.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015992)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21960
fragaria_vesca FvH4_3g02090
malus_domestica MD05G1345800.v1.1 MD10G1321200.v1.1
prunus_persica Prupe.4G021100_v2.0.a1
pyrus_communis pycom10g27190
rosa_chinensis RchiOBHm_Chr5g0003181
rosa_laevigata RLG00000031083
rosa_multiflora Rmu_sc0000146.1_g000034
rosa_roxburghii Rroxscaffold_1G00072830
rosa_rugosa Rorug04G0401100
rosa_samantha Rh5AG026000 Rh5BG027200 Rh5CG028800
rosa_wichuraiana Rw5G002410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 215
Acc65I GGTACC 1 cut(s) 740
AccB1I GGYRCC 1 cut(s) 740
AccII CGCG 1 cut(s) 738
AciI CCGC 3 cut(s) 713, 736, 738
AclWI GGATC 3 cut(s) 469, 816, 973
AcoI YGGCCR 1 cut(s) 858
AcuI CTGAAG 1 cut(s) 144
AdeI CACNNNGTG 2 cut(s) 605, 607
AfaI GTAC 2 cut(s) 314, 742
AfiI CCNNNNNNNGG 4 cut(s) 244, 562, 712, 932
AgsI TTSAA 3 cut(s) 320, 719, 894
AjnI CCWGG 4 cut(s) 79, 254, 352, 556
AluBI AGCT 9 cut(s) 14, 38, 111, 151, 291, 581, 613, 649, 899
AluI AGCT 9 cut(s) 14, 38, 111, 151, 291, 581, 613, 649, 899
Alw21I GWGCWC 3 cut(s) 16, 583, 621
Alw44I GTGCAC 1 cut(s) 617
AlwI GGATC 3 cut(s) 469, 816, 973
AoxI GGCC 2 cut(s) 418, 858
ApaLI GTGCAC 1 cut(s) 617
ApeKI GCWGC 2 cut(s) 241, 955
ArsI GACNNNNNNTTYG 2 cut(s) 275, 307
Asp718I GGTACC 1 cut(s) 740
AspLEI GCGC 1 cut(s) 165
AspS9I GGNCC 3 cut(s) 76, 261, 419
AsuHPI GGTGA 2 cut(s) 803, 895
AsuNHI GCTAGC 1 cut(s) 34
AvaII GGWCC 2 cut(s) 76, 261
AxyI CCTNAGG 1 cut(s) 117
BaeGI GKGCMC 3 cut(s) 353, 621, 689
BaeI ACNNNNGTAYC 2 cut(s) 724, 757
BalI TGGCCA 1 cut(s) 860
BanI GGYRCC 1 cut(s) 740
BanII GRGCYC 2 cut(s) 16, 583
Bbv12I GWGCWC 3 cut(s) 16, 583, 621
BbvCI CCTCAGC 1 cut(s) 645
BbvI GCAGC 2 cut(s) 228, 967
BccI CCATC 3 cut(s) 274, 446, 796
BciT130I CCWGG 4 cut(s) 81, 256, 354, 558
BfaI CTAG 6 cut(s) 35, 393, 413, 575, 818, 988
BfmI CTRYAG 1 cut(s) 769
BfoI RGCGCY 1 cut(s) 166
BisI GCNGC 2 cut(s) 242, 956
BlsI GCNGC 2 cut(s) 243, 957
Bme1390I CCNGG 4 cut(s) 81, 256, 354, 558
Bme18I GGWCC 2 cut(s) 76, 261
BmgT120I GGNCC 3 cut(s) 76, 261, 419
BmiI GGNNCC 2 cut(s) 78, 742
BmrFI CCNGG 4 cut(s) 81, 256, 354, 558
BmsI GCATC 2 cut(s) 220, 682
BmtI GCTAGC 1 cut(s) 38
BoxI GACNNNNGTC 2 cut(s) 81, 111
BpmI CTGGAG 2 cut(s) 359, 375
Bpu10I CCTNAGC 1 cut(s) 645
BpuEI CTTGAG 3 cut(s) 500, 545, 662
BsaJI CCNNGG 4 cut(s) 79, 352, 556, 736
BsaXI ACNNNNNCTCC 2 cut(s) 332, 362
Bsc4I CCNNNNNNNGG 4 cut(s) 244, 562, 712, 932
Bse1I ACTGG 3 cut(s) 220, 342, 445
Bse21I CCTNAGG 1 cut(s) 117
Bse3DI GCAATG 1 cut(s) 970
BseBI CCWGG 4 cut(s) 81, 256, 354, 558
BseDI CCNNGG 4 cut(s) 79, 352, 556, 736
BseGI GGATG 2 cut(s) 303, 426
BseLI CCNNNNNNNGG 4 cut(s) 244, 562, 712, 932
BseMI GCAATG 1 cut(s) 970
BseMII CTCAG 7 cut(s) 54, 57, 131, 205, 261, 659, 906
BseNI ACTGG 3 cut(s) 220, 342, 445
BseRI GAGGAG 1 cut(s) 475
BseSI GKGCMC 3 cut(s) 353, 621, 689
BseXI GCAGC 2 cut(s) 228, 967
Bsh1236I CGCG 1 cut(s) 738
BshFI GGCC 2 cut(s) 420, 860
BshNI GGYRCC 1 cut(s) 740
BsiHKAI GWGCWC 3 cut(s) 16, 583, 621
BslI CCNNNNNNNGG 4 cut(s) 244, 562, 712, 932
BsmI GAATGC 1 cut(s) 179
BsnI GGCC 2 cut(s) 420, 860
Bsp1286I GDGCHC 5 cut(s) 16, 353, 583, 621, 689
Bsp143I GATC 4 cut(s) 474, 808, 948, 978
BspACI CCGC 3 cut(s) 713, 736, 738
BspANI GGCC 2 cut(s) 420, 860
BspCNI CTCAG 7 cut(s) 55, 56, 130, 204, 262, 658, 907
BspFNI CGCG 1 cut(s) 738
BspLI GGNNCC 2 cut(s) 78, 742
BspOI GCTAGC 1 cut(s) 38
BspPI GGATC 3 cut(s) 469, 816, 973
BspT107I GGYRCC 1 cut(s) 740
BsrDI GCAATG 1 cut(s) 970
BsrI ACTGG 3 cut(s) 220, 342, 445
BssECI CCNNGG 4 cut(s) 79, 352, 556, 736
BssMI GATC 4 cut(s) 474, 808, 948, 978
Bst2UI CCWGG 4 cut(s) 81, 256, 354, 558
Bst4CI ACNGT 5 cut(s) 212, 520, 587, 605, 623
Bst6I CTCTTC 3 cut(s) 23, 66, 442
BstC8I GCNNGC 1 cut(s) 36
BstDEI CTNAG 7 cut(s) 43, 63, 117, 191, 270, 645, 915
BstDSI CCRYGG 1 cut(s) 736
BstENI CCTNNNNNAGG 1 cut(s) 930
BstF5I GGATG 2 cut(s) 303, 426
BstFNI CGCG 1 cut(s) 738
BstH2I RGCGCY 1 cut(s) 166
BstHHI GCGC 1 cut(s) 165
BstKTI GATC 4 cut(s) 477, 811, 951, 981
BstMBI GATC 4 cut(s) 474, 808, 948, 978
BstMWI GCNNNNNNNGC 2 cut(s) 35, 44
BstNI CCWGG 4 cut(s) 81, 256, 354, 558
BstNSI RCATGY 2 cut(s) 514, 676
BstPAI GACNNNNGTC 2 cut(s) 81, 111
BstSCI CCNGG 4 cut(s) 79, 254, 352, 556
BstSFI CTRYAG 1 cut(s) 769
BstSLI GKGCMC 3 cut(s) 353, 621, 689
BstUI CGCG 1 cut(s) 738
BstV1I GCAGC 2 cut(s) 228, 967
BstX2I RGATCY 2 cut(s) 474, 978
BstYI RGATCY 2 cut(s) 474, 978
Bsu36I CCTNAGG 1 cut(s) 117
BsuRI GGCC 2 cut(s) 420, 860
BtgI CCRYGG 1 cut(s) 736
BtsCI GGATG 2 cut(s) 303, 426
BtsI GCAGTG 3 cut(s) 54, 174, 965
BtsIMutI CAGTG 7 cut(s) 54, 174, 335, 516, 592, 601, 965
Cac8I GCNNGC 1 cut(s) 36
CfoI GCGC 1 cut(s) 165
Cfr13I GGNCC 3 cut(s) 76, 261, 419
Cfr42I CCGCGG 1 cut(s) 739
Csp6I GTAC 2 cut(s) 313, 741
CspCI CAANNNNNGTGG 2 cut(s) 505, 540
CviAII CATG 7 cut(s) 206, 225, 511, 541, 662, 673, 748
CviQI GTAC 2 cut(s) 313, 741
DdeI CTNAG 7 cut(s) 43, 63, 117, 191, 270, 645, 915
DpnI GATC 4 cut(s) 476, 810, 950, 980
DpnII GATC 4 cut(s) 474, 808, 948, 978
DraIII CACNNNGTG 2 cut(s) 605, 607
DrdI GACNNNNNNGTC 1 cut(s) 215
DseDI GACNNNNNNGTC 1 cut(s) 215
EaeI YGGCCR 1 cut(s) 858
Eam1104I CTCTTC 3 cut(s) 23, 66, 442
EarI CTCTTC 3 cut(s) 23, 66, 442
Ecl136II GAGCTC 2 cut(s) 14, 581
Eco24I GRGCYC 2 cut(s) 16, 583
Eco47I GGWCC 2 cut(s) 76, 261
Eco53kI GAGCTC 2 cut(s) 14, 581
Eco57I CTGAAG 1 cut(s) 144
Eco81I CCTNAGG 1 cut(s) 117
EcoICRI GAGCTC 2 cut(s) 14, 581
EcoNI CCTNNNNNAGG 1 cut(s) 930
EcoO109I RGGNCCY 2 cut(s) 76, 261
EcoRII CCWGG 4 cut(s) 79, 254, 352, 556
EcoT38I GRGCYC 2 cut(s) 16, 583
FaeI CATG 7 cut(s) 209, 228, 514, 544, 665, 676, 751
FalI AAGNNNNNCTT 2 cut(s) 135, 167
FatI CATG 7 cut(s) 205, 224, 510, 540, 661, 672, 747
Fnu4HI GCNGC 2 cut(s) 242, 956
FokI GGATG 2 cut(s) 310, 413
FriOI GRGCYC 2 cut(s) 16, 583
Fsp4HI GCNGC 2 cut(s) 242, 956
FspBI CTAG 6 cut(s) 35, 393, 413, 575, 818, 988
GlaI GCGC 1 cut(s) 164
GluI GCNGC 2 cut(s) 242, 956
GsuI CTGGAG 2 cut(s) 359, 375
HaeII RGCGCY 1 cut(s) 166
HaeIII GGCC 2 cut(s) 420, 860
HhaI GCGC 1 cut(s) 165
Hin1II CATG 7 cut(s) 209, 228, 514, 544, 665, 676, 751
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HincII GTYRAC 1 cut(s) 640
HindII GTYRAC 1 cut(s) 640
HindIII AAGCTT 2 cut(s) 149, 897
HinfI GANTC 1 cut(s) 248
HphI GGTGA 2 cut(s) 803, 895
Hpy166II GTNNAC 3 cut(s) 516, 619, 640
Hpy188I TCNGA 5 cut(s) 137, 194, 271, 373, 916
Hpy188III TCNNGA 4 cut(s) 9, 494, 679, 850
Hpy8I GTNNAC 3 cut(s) 516, 619, 640
HpyAV CCTTC 3 cut(s) 268, 450, 500
HpyCH4III ACNGT 5 cut(s) 212, 520, 587, 605, 623
HpyCH4V TGCA 4 cut(s) 179, 619, 695, 963
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 44
HpyF3I CTNAG 7 cut(s) 43, 63, 117, 191, 270, 645, 915
Hsp92II CATG 7 cut(s) 209, 228, 514, 544, 665, 676, 751
HspAI GCGC 1 cut(s) 163
KpnI GGTACC 1 cut(s) 744
KspI CCGCGG 1 cut(s) 739
Kzo9I GATC 4 cut(s) 474, 808, 948, 978
LmnI GCTCC 3 cut(s) 288, 462, 578
Lsp1109I GCAGC 2 cut(s) 228, 967
LweI GCATC 2 cut(s) 220, 682
MaeI CTAG 6 cut(s) 35, 393, 413, 575, 818, 988
MaeIII GTNAC 1 cut(s) 668
MalI GATC 4 cut(s) 476, 810, 950, 980
MboI GATC 4 cut(s) 474, 808, 948, 978
MboII GAAGA 8 cut(s) 10, 13, 83, 137, 193, 332, 456, 459
MflI RGATCY 2 cut(s) 474, 978
MhlI GDGCHC 5 cut(s) 16, 353, 583, 621, 689
MlsI TGGCCA 1 cut(s) 860
MluCI AATT 1 cut(s) 324
MluNI TGGCCA 1 cut(s) 860
MlyI GAGTC 1 cut(s) 242
Mox20I TGGCCA 1 cut(s) 860
MscI TGGCCA 1 cut(s) 860
MseI TTAA 2 cut(s) 327, 882
MslI CAYNNNNRTG 1 cut(s) 210
Msp20I TGGCCA 1 cut(s) 860
MspA1I CMGCKG 2 cut(s) 111, 738
MspR9I CCNGG 4 cut(s) 81, 256, 354, 558
Mva1269I GAATGC 1 cut(s) 179
MvaI CCWGG 4 cut(s) 81, 256, 354, 558
MvnI CGCG 1 cut(s) 738
MwoI GCNNNNNNNGC 2 cut(s) 35, 44
NdeII GATC 4 cut(s) 474, 808, 948, 978
NheI GCTAGC 1 cut(s) 34
NlaIII CATG 7 cut(s) 209, 228, 514, 544, 665, 676, 751
NlaIV GGNNCC 2 cut(s) 78, 742
NmuCI GTSAC 1 cut(s) 668
NspI RCATGY 2 cut(s) 514, 676
PctI GAATGC 1 cut(s) 179
PkrI GCNGC 2 cut(s) 243, 957
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
PpuMI RGGWCCY 2 cut(s) 76, 261
PshAI GACNNNNGTC 2 cut(s) 81, 111
Psp124BI GAGCTC 2 cut(s) 16, 583
Psp5II RGGWCCY 2 cut(s) 76, 261
Psp6I CCWGG 4 cut(s) 79, 254, 352, 556
PspGI CCWGG 4 cut(s) 79, 254, 352, 556
PspN4I GGNNCC 2 cut(s) 78, 742
PspPI GGNCC 3 cut(s) 76, 261, 419
PspPPI RGGWCCY 2 cut(s) 76, 261
PsuI RGATCY 2 cut(s) 474, 978
PvuII CAGCTG 1 cut(s) 111
RsaI GTAC 2 cut(s) 314, 742
RsaNI GTAC 2 cut(s) 313, 741
RseI CAYNNNNRTG 1 cut(s) 210
SacI GAGCTC 2 cut(s) 16, 583
SacII CCGCGG 1 cut(s) 739
SaqAI TTAA 2 cut(s) 327, 882
SatI GCNGC 2 cut(s) 242, 956
Sau3AI GATC 4 cut(s) 474, 808, 948, 978
Sau96I GGNCC 3 cut(s) 76, 261, 419
SchI GAGTC 1 cut(s) 242
ScrFI CCNGG 4 cut(s) 81, 256, 354, 558
SduI GDGCHC 5 cut(s) 16, 353, 583, 621, 689
SfaNI GCATC 2 cut(s) 220, 682
SfcI CTRYAG 1 cut(s) 769
Sfr303I CCGCGG 1 cut(s) 739
SgrBI CCGCGG 1 cut(s) 739
SinI GGWCC 2 cut(s) 76, 261
SmiMI CAYNNNNRTG 1 cut(s) 210
SmlI CTYRAG 3 cut(s) 479, 524, 677
SmoI CTYRAG 3 cut(s) 479, 524, 677
Sse9I AATT 1 cut(s) 324
SsiI CCGC 3 cut(s) 713, 736, 738
SspMI CTAG 6 cut(s) 35, 393, 413, 575, 818, 988
SstI GAGCTC 2 cut(s) 16, 583
StyD4I CCNGG 4 cut(s) 79, 254, 352, 556
TaaI ACNGT 5 cut(s) 212, 520, 587, 605, 623
TasI AATT 1 cut(s) 324
Tru1I TTAA 2 cut(s) 327, 882
Tru9I TTAA 2 cut(s) 327, 882
TscAI CASTG 7 cut(s) 54, 181, 342, 523, 592, 608, 965
TseFI GTSAC 1 cut(s) 668
TseI GCWGC 2 cut(s) 241, 955
Tsp45I GTSAC 1 cut(s) 668
TspDTI ATGAA 2 cut(s) 84, 415
TspRI CASTG 7 cut(s) 54, 181, 342, 523, 592, 608, 965
VneI GTGCAC 1 cut(s) 617
VpaK11BI GGWCC 2 cut(s) 76, 261
XagI CCTNNNNNAGG 1 cut(s) 930
XceI RCATGY 2 cut(s) 514, 676
XspI CTAG 6 cut(s) 35, 393, 413, 575, 818, 988
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.