Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0015992

Physical Location & Seq

Genomic Coordinates Reverse (-)

93823431 .. 93825633

Gene Structure 2203 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00072830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGTGTCCATCTTCTGGTTTATTTAAGCAAGCACCCAAGAGTCTAAAACCAAAGCAGGGCCTCATCAGTACTGAAACGGCAAACTCTACTGAAATGGCTTCCAGAGCTCTCTTCTTCTTTGCTTTGCTATCTCTCTCAGCAGTGCTTTGCTTTGCTGAGAGCAATGAGGAAGAGCCAGGTCTTGTTATGAACTTCTACAGTGACTCATGTCCTCAGGCTGAAGATATCGTCAGAGAGCAGGTCAAGCTCCTCTACAAGCGCCACAAGAACACTGCTTTCTCTTGGCTCAGAAACATCTTCCATGACTGTGCTGTCCAGTCATGTGATGCTTCACTACTTTTGGACTCAACAAGGAGGTCTTTGTCTGAGAAAGAAATGGACAGAAGCTTTGGGATGAGAAATTTCAGGTACATTGAAGAGATCAAAGAAGCAATAGAGAGGGAGTGCCCTGGAGTTGTTTCTTGCTCAGATATTCTTGTCTTGTCAGCCAGAGAAGGAGTTGTTAGGCTAGGAGGCCCATTTATTCCTCTTAAAACTGGAAGGAGAGATGGTAGAAGGAGCAGAGCAGAGATCCTTGAGGAGTACCTTCCTGACCACAATGAGAGCATGTCAACTGTTCTTGAGAAGTTCTCTGCCATGGGCATTGACACCCCTGGAGTTGTTGCCCTTCTAGGAGCTCACAGTGTTGGAAGAACACACTGTGTGAAGTTGGTGCACCGTCTGTACCCAGAAGTTGACCCAGCTCTGAACCCAGAACATGTCCCCCACATGCTCAAGAAGTGCCCTGATGCGATCCCTGACCCCAAGGCAGTCCAGTACGTAAGAAATGACCGTGGTACCCCCATGATCTTCGACAACAACTACTACAGGAACATCTTGGACAACAAGGGCTTGATGATGGTGGATCACCAGCTTGCCACAGACAAGAGGACCAAGCCCTATGTCAAGAAAATGGCCAAAAGCCAAGACTACTTCTTCAAGGAGTTCACAAGAGCCTTCACCATTCTCTCCGAGAACAACCCTCTAACCGGAGACAAGGGCGAGATCAGGCAACAGTGCAATGTGGCCAACAAGCTCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

360

Amino Acids

40.74

Weight (kDa)

8.25

Isoelectric Point (pI)

54.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	77 - 321	3.6e-71	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21960
fragaria_vesca	FvH4_3g02090
malus_domestica	MD05G1345800.v1.1 MD10G1321200.v1.1
prunus_persica	Prupe.4G021100_v2.0.a1
pyrus_communis	pycom10g27190
rosa_chinensis	RchiOBHm_Chr5g0003181
rosa_laevigata	RLG00000031083
rosa_multiflora	Rmu_sc0000146.1_g000034
rosa_roxburghii	Rroxscaffold_1G00072830
rosa_rugosa	Rorug04G0401100
rosa_samantha	Rh5AG026000 Rh5BG027200 Rh5CG028800
rosa_wichuraiana	Rw5G002410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	311
Acc36I	ACCTGC	1 cut(s)	229
Acc65I	GGTACC	1 cut(s)	836
AccB1I	GGYRCC	1 cut(s)	836
AccB7I	CCANNNNNTGG	1 cut(s)	14
AclWI	GGATC	3 cut(s)	565, 787, 912
AcoI	YGGCCR	2 cut(s)	954, 1065
AcsI	RAATTY	1 cut(s)	400
AcuI	CTGAAG	1 cut(s)	240
AdeI	CACNNNGTG	2 cut(s)	701, 703
AfaI	GTAC	6 cut(s)	70, 410, 584, 725, 818, 838
AfiI	CCNNNNNNNGG	3 cut(s)	14, 56, 1028
AflIII	ACRYGT	1 cut(s)	757
AgsI	TTSAA	2 cut(s)	416, 979
AjnI	CCWGG	3 cut(s)	175, 448, 652
AluBI	AGCT	7 cut(s)	107, 247, 387, 677, 743, 913, 1075
AluI	AGCT	7 cut(s)	107, 247, 387, 677, 743, 913, 1075
Alw21I	GWGCWC	3 cut(s)	109, 679, 717
Alw26I	GTCTC	1 cut(s)	1026
Alw44I	GTGCAC	1 cut(s)	713
AlwI	GGATC	3 cut(s)	565, 787, 912
AoxI	GGCC	4 cut(s)	58, 514, 954, 1065
ApaLI	GTGCAC	1 cut(s)	713
ApoI	RAATTY	1 cut(s)	400
ArsI	GACNNNNNNTTYG	2 cut(s)	371, 403
Asp718I	GGTACC	1 cut(s)	836
AspLEI	GCGC	1 cut(s)	261
AspS9I	GGNCC	3 cut(s)	58, 515, 930
AsuHPI	GGTGA	2 cut(s)	899, 991
AvaII	GGWCC	1 cut(s)	930
AxyI	CCTNAGG	1 cut(s)	213
BaeGI	GKGCMC	3 cut(s)	449, 717, 785
BaeI	ACNNNNGTAYC	2 cut(s)	820, 853
BalI	TGGCCA	2 cut(s)	956, 1067
BanI	GGYRCC	1 cut(s)	836
BanII	GRGCYC	2 cut(s)	109, 679
Bbv12I	GWGCWC	3 cut(s)	109, 679, 717
BccI	CCATC	3 cut(s)	16, 542, 892
BceAI	ACGGC	1 cut(s)	93
BciT130I	CCWGG	3 cut(s)	177, 450, 654
BcoDI	GTCTC	1 cut(s)	1026
BfaI	CTAG	3 cut(s)	509, 671, 1081
BfmI	CTRYAG	2 cut(s)	196, 865
BfoI	RGCGCY	1 cut(s)	262
BfuAI	ACCTGC	1 cut(s)	229
BmcAI	AGTACT	1 cut(s)	70
Bme1390I	CCNGG	3 cut(s)	177, 450, 654
Bme18I	GGWCC	1 cut(s)	930
BmgT120I	GGNCC	3 cut(s)	58, 515, 930
BmiI	GGNNCC	1 cut(s)	838
BmrFI	CCNGG	3 cut(s)	177, 450, 654
BmsI	GCATC	2 cut(s)	316, 778
BoxI	GACNNNNGTC	1 cut(s)	207
BplI	GAGNNNNNCTC	2 cut(s)	614, 646
BpmI	CTGGAG	2 cut(s)	471, 675
BpuEI	CTTGAG	3 cut(s)	596, 641, 758
BsaAI	YACGTR	1 cut(s)	820
BsaJI	CCNNGG	5 cut(s)	448, 636, 652, 804, 832
BsaWI	WCCGGW	1 cut(s)	1028
BsaXI	ACNNNNNCTCC	2 cut(s)	535, 565
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 56, 1028
Bse1I	ACTGG	3 cut(s)	316, 541, 814
Bse21I	CCTNAGG	1 cut(s)	213
Bse3DI	GCAATG	2 cut(s)	169, 1066
BseBI	CCWGG	3 cut(s)	177, 450, 654
BseDI	CCNNGG	5 cut(s)	448, 636, 652, 804, 832
BseGI	GGATG	1 cut(s)	399
BseLI	CCNNNNNNNGG	3 cut(s)	14, 56, 1028
BseMI	GCAATG	2 cut(s)	169, 1066
BseMII	CTCAG	6 cut(s)	147, 150, 227, 301, 357, 480
BseNI	ACTGG	3 cut(s)	316, 541, 814
BseRI	GAGGAG	2 cut(s)	239, 593
BseSI	GKGCMC	3 cut(s)	449, 717, 785
BseYI	CCCAGC	1 cut(s)	739
BshFI	GGCC	4 cut(s)	60, 516, 956, 1067
BshNI	GGYRCC	1 cut(s)	836
BsiHKAI	GWGCWC	3 cut(s)	109, 679, 717
BsiSI	CCGG	1 cut(s)	1029
BslFI	GGGAC	1 cut(s)	746
BslI	CCNNNNNNNGG	3 cut(s)	14, 56, 1028
BsmAI	GTCTC	1 cut(s)	1026
BsmFI	GGGAC	1 cut(s)	746
BsnI	GGCC	4 cut(s)	60, 516, 956, 1067
Bsp1286I	GDGCHC	5 cut(s)	109, 449, 679, 717, 785
Bsp143I	GATC	6 cut(s)	420, 570, 792, 846, 904, 1044
Bsp19I	CCATGG	1 cut(s)	636
BspANI	GGCC	4 cut(s)	60, 516, 956, 1067
BspCNI	CTCAG	6 cut(s)	148, 149, 226, 300, 358, 479
BspLI	GGNNCC	1 cut(s)	838
BspMI	ACCTGC	1 cut(s)	229
BspPI	GGATC	3 cut(s)	565, 787, 912
BspQI	GCTCTTC	1 cut(s)	165
BspT107I	GGYRCC	1 cut(s)	836
BsrDI	GCAATG	2 cut(s)	169, 1066
BsrI	ACTGG	3 cut(s)	316, 541, 814
BssECI	CCNNGG	5 cut(s)	448, 636, 652, 804, 832
BssMI	GATC	6 cut(s)	420, 570, 792, 846, 904, 1044
BssT1I	CCWWGG	2 cut(s)	636, 804
Bst2UI	CCWGG	3 cut(s)	177, 450, 654
Bst4CI	ACNGT	8 cut(s)	200, 308, 616, 683, 701, 719, 833, 1056
Bst6I	CTCTTC	3 cut(s)	116, 165, 411
BstBAI	YACGTR	1 cut(s)	820
BstC8I	GCNNGC	2 cut(s)	30, 915
BstDEI	CTNAG	6 cut(s)	136, 156, 213, 287, 366, 466
BstDSI	CCRYGG	2 cut(s)	636, 832
BstF5I	GGATG	1 cut(s)	399
BstH2I	RGCGCY	1 cut(s)	262
BstHHI	GCGC	1 cut(s)	261
BstKTI	GATC	6 cut(s)	423, 573, 795, 849, 907, 1047
BstMAI	GTCTC	1 cut(s)	1026
BstMBI	GATC	6 cut(s)	420, 570, 792, 846, 904, 1044
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 244
BstNI	CCWGG	3 cut(s)	177, 450, 654
BstNSI	RCATGY	3 cut(s)	610, 761, 772
BstPAI	GACNNNNGTC	1 cut(s)	207
BstSCI	CCNGG	3 cut(s)	175, 448, 652
BstSFI	CTRYAG	2 cut(s)	196, 865
BstSLI	GKGCMC	3 cut(s)	449, 717, 785
BstSNI	TACGTA	1 cut(s)	820
BstX2I	RGATCY	1 cut(s)	570
BstYI	RGATCY	1 cut(s)	570
Bsu36I	CCTNAGG	1 cut(s)	213
BsuRI	GGCC	4 cut(s)	60, 516, 956, 1067
BtgI	CCRYGG	2 cut(s)	636, 832
BtsCI	GGATG	1 cut(s)	399
BtsI	GCAGTG	2 cut(s)	147, 270
BtsIMutI	CAGTG	6 cut(s)	147, 205, 270, 688, 697, 1061
BveI	ACCTGC	1 cut(s)	229
Cac8I	GCNNGC	2 cut(s)	30, 915
CfoI	GCGC	1 cut(s)	261
Cfr13I	GGNCC	3 cut(s)	58, 515, 930
Csp6I	GTAC	6 cut(s)	69, 409, 583, 724, 817, 837
CviAII	CATG	8 cut(s)	207, 302, 321, 607, 637, 758, 769, 844
CviQI	GTAC	6 cut(s)	69, 409, 583, 724, 817, 837
DdeI	CTNAG	6 cut(s)	136, 156, 213, 287, 366, 466
DpnI	GATC	6 cut(s)	422, 572, 794, 848, 906, 1046
DpnII	GATC	6 cut(s)	420, 570, 792, 846, 904, 1044
DraIII	CACNNNGTG	2 cut(s)	701, 703
DrdI	GACNNNNNNGTC	1 cut(s)	311
DseDI	GACNNNNNNGTC	1 cut(s)	311
EaeI	YGGCCR	2 cut(s)	954, 1065
Eam1104I	CTCTTC	3 cut(s)	116, 165, 411
EarI	CTCTTC	3 cut(s)	116, 165, 411
Ecl136II	GAGCTC	2 cut(s)	107, 677
Eco105I	TACGTA	1 cut(s)	820
Eco130I	CCWWGG	2 cut(s)	636, 804
Eco24I	GRGCYC	2 cut(s)	109, 679
Eco32I	GATATC	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	930
Eco53kI	GAGCTC	2 cut(s)	107, 677
Eco57I	CTGAAG	1 cut(s)	240
Eco81I	CCTNAGG	1 cut(s)	213
EcoICRI	GAGCTC	2 cut(s)	107, 677
EcoO109I	RGGNCCY	1 cut(s)	58
EcoRII	CCWGG	3 cut(s)	175, 448, 652
EcoRV	GATATC	1 cut(s)	226
EcoT14I	CCWWGG	2 cut(s)	636, 804
EcoT38I	GRGCYC	2 cut(s)	109, 679
ErhI	CCWWGG	2 cut(s)	636, 804
FaeI	CATG	8 cut(s)	210, 305, 324, 610, 640, 761, 772, 847
FalI	AAGNNNNNCTT	2 cut(s)	343, 375
FaqI	GGGAC	1 cut(s)	746
FatI	CATG	8 cut(s)	206, 301, 320, 606, 636, 757, 768, 843
FokI	GGATG	1 cut(s)	406
FriOI	GRGCYC	2 cut(s)	109, 679
FspBI	CTAG	3 cut(s)	509, 671, 1081
GlaI	GCGC	1 cut(s)	260
GsaI	CCCAGC	1 cut(s)	743
GsuI	CTGGAG	2 cut(s)	471, 675
HaeII	RGCGCY	1 cut(s)	262
HaeIII	GGCC	4 cut(s)	60, 516, 956, 1067
HapII	CCGG	1 cut(s)	1029
HhaI	GCGC	1 cut(s)	261
Hin1II	CATG	8 cut(s)	210, 305, 324, 610, 640, 761, 772, 847
Hin6I	GCGC	1 cut(s)	259
HinP1I	GCGC	1 cut(s)	259
HincII	GTYRAC	2 cut(s)	612, 736
HindII	GTYRAC	2 cut(s)	612, 736
HindIII	AAGCTT	1 cut(s)	385
HinfI	GANTC	3 cut(s)	40, 203, 344
HpaII	CCGG	1 cut(s)	1029
HphI	GGTGA	2 cut(s)	899, 991
Hpy166II	GTNNAC	4 cut(s)	612, 715, 736, 987
Hpy188I	TCNGA	6 cut(s)	233, 290, 367, 469, 747, 1012
Hpy188III	TCNNGA	5 cut(s)	102, 590, 620, 775, 946
Hpy8I	GTNNAC	4 cut(s)	612, 715, 736, 987
HpyAV	CCTTC	6 cut(s)	488, 534, 549, 596, 677, 1006
HpyCH4III	ACNGT	8 cut(s)	200, 308, 616, 683, 701, 719, 833, 1056
HpyCH4IV	ACGT	1 cut(s)	819
HpyCH4V	TGCA	2 cut(s)	715, 1059
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 244
HpyF3I	CTNAG	6 cut(s)	136, 156, 213, 287, 366, 466
HpySE526I	ACGT	1 cut(s)	819
Hsp92II	CATG	8 cut(s)	210, 305, 324, 610, 640, 761, 772, 847
HspAI	GCGC	1 cut(s)	259
KpnI	GGTACC	1 cut(s)	840
Kzo9I	GATC	6 cut(s)	420, 570, 792, 846, 904, 1044
LguI	GCTCTTC	1 cut(s)	165
LmnI	GCTCC	4 cut(s)	252, 558, 674, 1080
LweI	GCATC	2 cut(s)	316, 778
MaeI	CTAG	3 cut(s)	509, 671, 1081
MaeII	ACGT	1 cut(s)	819
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	6 cut(s)	422, 572, 794, 848, 906, 1046
MboI	GATC	6 cut(s)	420, 570, 792, 846, 904, 1044
MflI	RGATCY	1 cut(s)	570
MhlI	GDGCHC	5 cut(s)	109, 449, 679, 717, 785
MlsI	TGGCCA	2 cut(s)	956, 1067
MluCI	AATT	1 cut(s)	400
MluNI	TGGCCA	2 cut(s)	956, 1067
MlyI	GAGTC	3 cut(s)	49, 197, 338
MmeI	TCCRAC	1 cut(s)	667
Mox20I	TGGCCA	2 cut(s)	956, 1067
MscI	TGGCCA	2 cut(s)	956, 1067
MseI	TTAA	2 cut(s)	24, 531
MslI	CAYNNNNRTG	1 cut(s)	306
Msp20I	TGGCCA	2 cut(s)	956, 1067
MspI	CCGG	1 cut(s)	1029
MspR9I	CCNGG	3 cut(s)	177, 450, 654
MvaI	CCWGG	3 cut(s)	177, 450, 654
MwoI	GCNNNNNNNGC	2 cut(s)	104, 244
NcoI	CCATGG	1 cut(s)	636
NdeII	GATC	6 cut(s)	420, 570, 792, 846, 904, 1044
NlaIII	CATG	8 cut(s)	210, 305, 324, 610, 640, 761, 772, 847
NlaIV	GGNNCC	1 cut(s)	838
NmuCI	GTSAC	1 cut(s)	200
NspI	RCATGY	3 cut(s)	610, 761, 772
PciI	ACATGT	1 cut(s)	757
PciSI	GCTCTTC	1 cut(s)	165
PflMI	CCANNNNNTGG	1 cut(s)	14
PleI	GAGTC	3 cut(s)	48, 197, 338
PpsI	GAGTC	3 cut(s)	48, 197, 338
Ppu21I	YACGTR	1 cut(s)	820
PscI	ACATGT	1 cut(s)	757
PshAI	GACNNNNGTC	1 cut(s)	207
Psp124BI	GAGCTC	2 cut(s)	109, 679
Psp6I	CCWGG	3 cut(s)	175, 448, 652
PspFI	CCCAGC	1 cut(s)	739
PspGI	CCWGG	3 cut(s)	175, 448, 652
PspN4I	GGNNCC	1 cut(s)	838
PspPI	GGNCC	3 cut(s)	58, 515, 930
PsuI	RGATCY	1 cut(s)	570
RsaI	GTAC	6 cut(s)	70, 410, 584, 725, 818, 838
RsaNI	GTAC	6 cut(s)	69, 409, 583, 724, 817, 837
RseI	CAYNNNNRTG	1 cut(s)	306
SacI	GAGCTC	2 cut(s)	109, 679
SapI	GCTCTTC	1 cut(s)	165
SaqAI	TTAA	2 cut(s)	24, 531
Sau3AI	GATC	6 cut(s)	420, 570, 792, 846, 904, 1044
Sau96I	GGNCC	3 cut(s)	58, 515, 930
ScaI	AGTACT	1 cut(s)	70
SchI	GAGTC	3 cut(s)	49, 197, 338
ScrFI	CCNGG	3 cut(s)	177, 450, 654
SduI	GDGCHC	5 cut(s)	109, 449, 679, 717, 785
SfaNI	GCATC	2 cut(s)	316, 778
SfcI	CTRYAG	2 cut(s)	196, 865
SinI	GGWCC	1 cut(s)	930
SmiMI	CAYNNNNRTG	1 cut(s)	306
SmlI	CTYRAG	3 cut(s)	575, 620, 773
SmoI	CTYRAG	3 cut(s)	575, 620, 773
SnaBI	TACGTA	1 cut(s)	820
Sse9I	AATT	1 cut(s)	400
SspMI	CTAG	3 cut(s)	509, 671, 1081
SstI	GAGCTC	2 cut(s)	109, 679
StyD4I	CCNGG	3 cut(s)	175, 448, 652
StyI	CCWWGG	2 cut(s)	636, 804
TaaI	ACNGT	8 cut(s)	200, 308, 616, 683, 701, 719, 833, 1056
TaiI	ACGT	1 cut(s)	822
TaqI	TCGA	1 cut(s)	852
TasI	AATT	1 cut(s)	400
TatI	WGTACW	1 cut(s)	68
Tru1I	TTAA	2 cut(s)	24, 531
Tru9I	TTAA	2 cut(s)	24, 531
TscAI	CASTG	6 cut(s)	147, 205, 277, 688, 704, 1061
TseFI	GTSAC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	1 cut(s)	203
TspRI	CASTG	6 cut(s)	147, 205, 277, 688, 704, 1061
Van91I	CCANNNNNTGG	1 cut(s)	14
VneI	GTGCAC	1 cut(s)	713
VpaK11BI	GGWCC	1 cut(s)	930
XapI	RAATTY	1 cut(s)	400
XceI	RCATGY	3 cut(s)	610, 761, 772
XspI	CTAG	3 cut(s)	509, 671, 1081
ZrmI	AGTACT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.