Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006279

Physical Location & Seq

Genomic Coordinates Forward (+)

56583076 .. 56586673

Gene Structure 3598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0401100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCACAGGAAGTGTATTCTCAACGCGCTTTGTTCGGCGGGGCCATCTCCAGCATCATCCCTAATAGATTTCAGGATGTGAGCAATGTTCGTCAGGTTCCTGATCACCAGGAGGCATTTGTGGACCCTGCCCGCGACGAGAGCTTGATCATTGAGCTGTTGGATTTGAAGCCTGAAGTTGGGGACAATGGAAGTGCTGCCTGGTTTCTTCAGGACCTTGCCACTGAGCAAGAGGCTGAGGGAAGTGTGGTGGTTGAGCAGTCGGGAGTAGTTGAGGCTCCTGGGCTATGTTACAGAAACATACCTGCTGTTGTTACAACTGCAGTTGCCCAAATGGCAATTTCCAAGGGGCGACAAGGAAGGGAAGCACAAAATACTGTGAGGGTCTATGTGGCAAACCTACGACTTAAGGGAGTTAATACAGATGTGCTAATTACTGCATATGAACCCATTCATATCAATCCTTTGAGCGAAAGTGCTAACACAGTCGGGGCTGGTCTTGCTGCTCCTGCATTACAATCTGGGCATGTGCCAATGGCTGAGGTCTTTAGACTCGCTGTCTCGAGCTTCAAAATCAATGACTGGAATCTCTTTGGTTCTGGGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

202

Amino Acids

21.67

Weight (kDa)

4.76

Isoelectric Point (pI)

41.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mog1	PF04603	10 - 150	1.9e-39	Ran-interacting Mog1 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0006279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04670
fragaria_vesca	FvH4_3g02080 FvH4_3g02080 FvH4_3g02080 FvH4_3g02080 FvH4_3g02080 FvH4_3g02080
malus_domestica	MD10G1321300.v1.1
prunus_persica	Prupe.4G021000_v2.0.a1 Prupe.4G021000_v2.0.a1 Prupe.4G021000_v2.0.a1 Prupe.4G021000_v2.0.a1 Prupe.4G021000_v2.0.a1
pyrus_communis	pycom10g27200
rosa_chinensis	RchiOBHm_Chr5g0003171
rosa_laevigata	RLG00000031082
rosa_multiflora	Rmu_sc0012288.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072840
rosa_rugosa	Rorug04G0401000 Rorug04G0401100
rosa_samantha	Rh5AG025900 Rh5BG027100 Rh5CG028700 Rh5DG025500
rosa_wichuraiana	Rw0G010910 Rw5G002390 Rw5G002400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	313
AccII	CGCG	2 cut(s)	27, 135
AciI	CCGC	2 cut(s)	39, 133
AcuI	CTGAAG	2 cut(s)	194, 195
AfiI	CCNNNNNNNGG	1 cut(s)	179
AflII	CTTAAG	1 cut(s)	407
AgsI	TTSAA	2 cut(s)	169, 571
AhdI	GACNNNNNGTC	1 cut(s)	557
AjnI	CCWGG	3 cut(s)	108, 200, 280
AluBI	AGCT	3 cut(s)	144, 157, 567
AluI	AGCT	3 cut(s)	144, 157, 567
Alw26I	GTCTC	1 cut(s)	565
Ama87I	CYCGRG	1 cut(s)	562
AoxI	GGCC	2 cut(s)	42, 602
ApeKI	GCWGC	2 cut(s)	197, 503
Asp700I	GAANNNNTTC	1 cut(s)	450
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	4 cut(s)	42, 124, 214, 602
AsuHPI	GGTGA	1 cut(s)	98
AvaI	CYCGRG	1 cut(s)	562
AvaII	GGWCC	2 cut(s)	124, 214
BbvCI	CCTCAGC	2 cut(s)	237, 540
BbvI	GCAGC	2 cut(s)	184, 490
BccI	CCATC	1 cut(s)	53
BciT130I	CCWGG	3 cut(s)	110, 202, 282
BclI	TGATCA	2 cut(s)	103, 147
BcoDI	GTCTC	1 cut(s)	565
BfmI	CTRYAG	1 cut(s)	321
BfrI	CTTAAG	1 cut(s)	407
BfuAI	ACCTGC	1 cut(s)	313
BglI	GCCNNNNNGGC	1 cut(s)	335
BisI	GCNGC	2 cut(s)	198, 504
BlsI	GCNGC	2 cut(s)	199, 505
Bme1390I	CCNGG	3 cut(s)	110, 202, 282
Bme18I	GGWCC	2 cut(s)	124, 214
BmeRI	GACNNNNNGTC	1 cut(s)	557
BmeT110I	CYCGRG	1 cut(s)	562
BmgT120I	GGNCC	4 cut(s)	42, 124, 214, 602
BmiI	GGNNCC	4 cut(s)	43, 99, 126, 279
BmrFI	CCNGG	3 cut(s)	110, 202, 282
BmsI	GCATC	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	34
Bpu10I	CCTNAGC	2 cut(s)	237, 540
BsaJI	CCNNGG	2 cut(s)	281, 345
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse1I	ACTGG	1 cut(s)	587
Bse3DI	GCAATG	1 cut(s)	91
BseBI	CCWGG	3 cut(s)	110, 202, 282
BseDI	CCNNGG	2 cut(s)	281, 345
BseGI	GGATG	2 cut(s)	57, 82
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMI	GCAATG	1 cut(s)	91
BseMII	CTCAG	3 cut(s)	216, 228, 531
BseNI	ACTGG	1 cut(s)	587
BseXI	GCAGC	2 cut(s)	184, 490
Bsh1236I	CGCG	2 cut(s)	27, 135
BshFI	GGCC	2 cut(s)	44, 604
BsiHKCI	CYCGRG	1 cut(s)	562
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	1 cut(s)	179
BsmAI	GTCTC	1 cut(s)	565
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	2 cut(s)	44, 604
BsoBI	CYCGRG	1 cut(s)	562
Bsp143I	GATC	2 cut(s)	103, 147
BspACI	CCGC	2 cut(s)	39, 133
BspANI	GGCC	2 cut(s)	44, 604
BspCNI	CTCAG	3 cut(s)	217, 229, 532
BspFNI	CGCG	2 cut(s)	27, 135
BspLI	GGNNCC	4 cut(s)	43, 99, 126, 279
BspMAI	CTGCAG	1 cut(s)	325
BspMI	ACCTGC	1 cut(s)	313
BspTI	CTTAAG	1 cut(s)	407
BsrDI	GCAATG	1 cut(s)	91
BsrI	ACTGG	1 cut(s)	587
BssECI	CCNNGG	2 cut(s)	281, 345
BssMI	GATC	2 cut(s)	103, 147
BssT1I	CCWWGG	1 cut(s)	345
Bst2UI	CCWGG	3 cut(s)	110, 202, 282
Bst4CI	ACNGT	2 cut(s)	379, 487
BstAFI	CTTAAG	1 cut(s)	407
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	3 cut(s)	225, 237, 540
BstF5I	GGATG	2 cut(s)	57, 82
BstFNI	CGCG	2 cut(s)	27, 135
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	2 cut(s)	106, 150
BstMAI	GTCTC	1 cut(s)	565
BstMBI	GATC	2 cut(s)	103, 147
BstMWI	GCNNNNNNNGC	4 cut(s)	141, 335, 500, 509
BstNI	CCWGG	3 cut(s)	110, 202, 282
BstNSI	RCATGY	1 cut(s)	530
BstSCI	CCNGG	3 cut(s)	108, 200, 280
BstSFI	CTRYAG	1 cut(s)	321
BstUI	CGCG	2 cut(s)	27, 135
BstV1I	GCAGC	2 cut(s)	184, 490
BsuRI	GGCC	2 cut(s)	44, 604
BtsCI	GGATG	2 cut(s)	57, 82
BtsIMutI	CAGTG	1 cut(s)	222
BveI	ACCTGC	1 cut(s)	313
Cac8I	GCNNGC	1 cut(s)	133
CfoI	GCGC	1 cut(s)	29
Cfr13I	GGNCC	4 cut(s)	42, 124, 214, 602
CviAII	CATG	2 cut(s)	527, 606
DdeI	CTNAG	3 cut(s)	225, 237, 540
DpnI	GATC	2 cut(s)	105, 149
DpnII	GATC	2 cut(s)	103, 147
DriI	GACNNNNNGTC	1 cut(s)	557
Eam1105I	GACNNNNNGTC	1 cut(s)	557
Eco130I	CCWWGG	1 cut(s)	345
Eco47I	GGWCC	2 cut(s)	124, 214
Eco57I	CTGAAG	2 cut(s)	194, 195
Eco88I	CYCGRG	1 cut(s)	562
EcoO109I	RGGNCCY	1 cut(s)	214
EcoRII	CCWGG	3 cut(s)	108, 200, 280
EcoT14I	CCWWGG	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	345
FaeI	CATG	2 cut(s)	530, 609
FaiI	YATR	8 cut(s)	289, 302, 390, 442, 444, 456, 528, 607
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	2 cut(s)	526, 605
FauI	CCCGC	2 cut(s)	32, 140
FauNDI	CATATG	1 cut(s)	442
FbaI	TGATCA	2 cut(s)	103, 147
Fnu4HI	GCNGC	2 cut(s)	198, 504
FokI	GGATG	2 cut(s)	44, 89
Fsp4HI	GCNGC	2 cut(s)	198, 504
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	2 cut(s)	198, 504
GsuI	CTGGAG	1 cut(s)	34
HaeIII	GGCC	2 cut(s)	44, 604
HhaI	GCGC	1 cut(s)	29
Hin1II	CATG	2 cut(s)	530, 609
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HinfI	GANTC	2 cut(s)	552, 586
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188III	TCNNGA	5 cut(s)	74, 101, 212, 264, 562
Hpy8I	GTNNAC	1 cut(s)	124
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	1 cut(s)	354
HpyCH4III	ACNGT	2 cut(s)	379, 487
HpyCH4V	TGCA	3 cut(s)	323, 440, 512
HpyF10VI	GCNNNNNNNGC	4 cut(s)	141, 335, 500, 509
HpyF3I	CTNAG	3 cut(s)	225, 237, 540
Hsp92II	CATG	2 cut(s)	530, 609
HspAI	GCGC	1 cut(s)	27
Ksp22I	TGATCA	2 cut(s)	103, 147
Kzo9I	GATC	2 cut(s)	103, 147
LmnI	GCTCC	2 cut(s)	283, 511
Lsp1109I	GCAGC	2 cut(s)	184, 490
LweI	GCATC	1 cut(s)	63
MaeIII	GTNAC	2 cut(s)	290, 313
MalI	GATC	2 cut(s)	105, 149
MboI	GATC	2 cut(s)	103, 147
MboII	GAAGA	1 cut(s)	200
MluCI	AATT	2 cut(s)	339, 432
MlyI	GAGTC	1 cut(s)	546
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	6 cut(s)	106, 226, 232, 268, 375, 535
MroXI	GAANNNNTTC	1 cut(s)	450
MseI	TTAA	2 cut(s)	408, 417
MspCI	CTTAAG	1 cut(s)	407
MspR9I	CCNGG	3 cut(s)	110, 202, 282
MvaI	CCWGG	3 cut(s)	110, 202, 282
MvnI	CGCG	2 cut(s)	27, 135
MwoI	GCNNNNNNNGC	4 cut(s)	141, 335, 500, 509
NdeI	CATATG	1 cut(s)	442
NdeII	GATC	2 cut(s)	103, 147
NlaIII	CATG	2 cut(s)	530, 609
NlaIV	GGNNCC	4 cut(s)	43, 99, 126, 279
NspI	RCATGY	1 cut(s)	530
PaeR7I	CTCGAG	1 cut(s)	562
PdmI	GAANNNNTTC	1 cut(s)	450
PfeI	GAWTC	1 cut(s)	586
PkrI	GCNGC	2 cut(s)	199, 505
PleI	GAGTC	1 cut(s)	546
PpsI	GAGTC	1 cut(s)	546
PpuMI	RGGWCCY	1 cut(s)	214
Psp5II	RGGWCCY	1 cut(s)	214
Psp6I	CCWGG	3 cut(s)	108, 200, 280
PspGI	CCWGG	3 cut(s)	108, 200, 280
PspN4I	GGNNCC	4 cut(s)	43, 99, 126, 279
PspPI	GGNCC	4 cut(s)	42, 124, 214, 602
PspPPI	RGGWCCY	1 cut(s)	214
PstI	CTGCAG	1 cut(s)	325
SaqAI	TTAA	2 cut(s)	408, 417
SatI	GCNGC	2 cut(s)	198, 504
Sau3AI	GATC	2 cut(s)	103, 147
Sau96I	GGNCC	4 cut(s)	42, 124, 214, 602
SchI	GAGTC	1 cut(s)	546
ScrFI	CCNGG	3 cut(s)	110, 202, 282
SetI	ASST	8 cut(s)	99, 146, 159, 219, 307, 402, 546, 569
SfaNI	GCATC	1 cut(s)	63
SfcI	CTRYAG	1 cut(s)	321
Sfr274I	CTCGAG	1 cut(s)	562
SinI	GGWCC	2 cut(s)	124, 214
SlaI	CTCGAG	1 cut(s)	562
SmlI	CTYRAG	2 cut(s)	407, 562
SmoI	CTYRAG	2 cut(s)	407, 562
Sse9I	AATT	2 cut(s)	339, 432
SsiI	CCGC	2 cut(s)	39, 133
StyD4I	CCNGG	3 cut(s)	108, 200, 280
StyI	CCWWGG	1 cut(s)	345
TaaI	ACNGT	2 cut(s)	379, 487
TaqI	TCGA	1 cut(s)	563
TasI	AATT	2 cut(s)	339, 432
TfiI	GAWTC	1 cut(s)	586
Tru1I	TTAA	2 cut(s)	408, 417
Tru9I	TTAA	2 cut(s)	408, 417
TscAI	CASTG	1 cut(s)	229
TseI	GCWGC	2 cut(s)	197, 503
TspDTI	ATGAA	2 cut(s)	443, 459
TspRI	CASTG	1 cut(s)	229
Vha464I	CTTAAG	1 cut(s)	407
VpaK11BI	GGWCC	2 cut(s)	124, 214
XceI	RCATGY	1 cut(s)	530
XhoI	CTCGAG	1 cut(s)	562
XmnI	GAANNNNTTC	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.